PDB Chemical Component DA2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DA2

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	NH1	1.486	1.465
C1	HC11	1.100	1.090
C1	HC12	1.100	1.090
C1	HC13	1.100	1.090
C2	NH1	1.478	1.465
C2	HC21	1.100	1.090
C2	HC22	1.100	1.089
C2	HC23	1.100	1.090
N	CA	1.488	1.470
N	H	1.000	1.008
N	H2	1.000	1.009
CA	CB	1.528	1.529
CA	C	1.525	1.508
CA	HA	1.100	1.090
CB	CG	1.517	1.531
CB	HCB1	1.100	1.089
CB	HCB2	1.100	1.091
CG	CD	1.517	1.530
CG	HCG1	1.100	1.089
CG	HCG2	1.100	1.091
CD	NE	1.466	1.464
CD	HCD1	1.100	1.089
CD	HCD2	1.100	1.091
NE	CZ	1.339	1.376
NE	HNE	1.000	0.970
CZ	NH2	1.329	1.303
CZ	NH1	1.347	1.374
NH2	HNH2	1.000	0.970
C	O	1.251	1.208
C	OXT	1.250	1.342
OXT	HXT	0.950	0.967

Bond Angles for DA2

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
NH1	C1	HC11	109.5	109.5
NH1	C1	HC12	109.4	109.5
NH1	C1	HC13	109.4	109.5
C1	NH1	C2	118.1	120.0
C1	NH1	CZ	123.5	120.0
HC11	C1	HC12	109.4	109.5
HC11	C1	HC13	109.5	109.5
HC12	C1	HC13	109.5	109.4
NH1	C2	HC21	109.5	109.4
NH1	C2	HC22	109.5	109.5
NH1	C2	HC23	109.5	109.5
C2	NH1	CZ	118.1	120.0
HC21	C2	HC22	109.4	109.5
HC21	C2	HC23	109.4	109.5
HC22	C2	HC23	109.5	109.5
CA	N	H	109.5	111.0
CA	N	H2	109.5	111.0
N	CA	CB	109.9	109.5
N	CA	C	111.1	109.4
N	CA	HA	109.1	109.4
H	N	H2	109.5	111.0
CB	CA	C	109.4	109.5
CB	CA	HA	108.6	109.5
CA	CB	CG	113.7	109.5
CA	CB	HCB1	108.4	109.5
CA	CB	HCB2	108.4	109.5
C	CA	HA	108.6	109.5
CA	C	O	118.2	120.0
CA	C	OXT	117.9	120.0
CG	CB	HCB1	108.4	109.4
CG	CB	HCB2	108.4	109.4
CB	CG	CD	111.0	109.5
CB	CG	HCG1	109.1	109.5
CB	CG	HCG2	109.1	109.4
HCB1	CB	HCB2	109.5	109.5
CD	CG	HCG1	109.1	109.5
CD	CG	HCG2	109.1	109.5
CG	CD	NE	111.6	109.5
CG	CD	HCD1	108.9	109.5
CG	CD	HCD2	108.9	109.4
HCG1	CG	HCG2	109.5	109.5
NE	CD	HCD1	108.9	109.5
NE	CD	HCD2	109.0	109.5
CD	NE	CZ	127.5	120.0
CD	NE	HNE	116.2	120.1
HCD1	CD	HCD2	109.5	109.5
CZ	NE	HNE	116.3	119.9
NE	CZ	NH2	117.3	120.0
NE	CZ	NH1	124.8	120.0
NH2	CZ	NH1	117.9	120.0
CZ	NH2	HNH2	112.0	120.0
O	C	OXT	123.9	120.0
C	OXT	HXT	109.5	117.0

Torsion Angles for DA2

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
HC11	C1	NH1	HC12	240.0	239.9
HC11	C1	NH1	HC13	120.0	120.0
HC12	C1	NH1	HC13	240.0	240.0
C1	NH1	C2	HC21	180.0	90.0
C1	NH1	C2	HC22	300.0	210.0
C1	NH1	C2	HC23	60.0	330.1
C2	NH1	C1	CZ	186.6	179.9
NE	CZ	NH1	C1	26.5	180.0
NH2	CZ	NH1	C1	205.0	360.0
NH1	C1	HC11	HC12	120.0	120.0
NH1	C1	HC11	HC13	240.0	240.0
HC11	C1	NH1	C2	180.0	90.0
HC11	C1	NH1	CZ	353.4	270.0
HC12	C1	HC11	HC13	120.0	120.0
NH1	C1	HC12	HC11	240.0	240.0
NH1	C1	HC12	HC13	120.0	120.0
HC12	C1	NH1	C2	300.0	210.0
HC12	C1	NH1	CZ	113.4	30.1
HC11	C1	HC12	HC13	240.0	240.0
NH1	C1	HC13	HC11	120.0	120.0
NH1	C1	HC13	HC12	240.0	240.0
HC13	C1	NH1	C2	60.0	330.0
HC13	C1	NH1	CZ	233.4	150.0
HC11	C1	HC13	HC12	120.0	120.0
C2	NH1	C1	HC11	180.0	90.0
C2	NH1	C1	HC12	300.0	210.0
C2	NH1	C1	HC13	60.0	330.0
C1	NH1	C2	CZ	173.7	180.1
HC21	C2	NH1	HC22	240.0	240.0
HC21	C2	NH1	HC23	120.0	120.0
HC22	C2	NH1	HC23	240.0	240.0
NE	CZ	NH1	C2	199.9	0.0
NH2	CZ	NH1	C2	18.4	180.0
NH1	C2	HC21	HC22	120.0	120.0
NH1	C2	HC21	HC23	240.0	240.1
HC21	C2	NH1	CZ	6.2	269.9
HC22	C2	HC21	HC23	120.0	120.0
NH1	C2	HC22	HC21	240.0	240.0
NH1	C2	HC22	HC23	120.0	120.0
HC22	C2	NH1	CZ	126.2	30.0
HC21	C2	HC22	HC23	240.0	240.0
NH1	C2	HC23	HC21	120.0	119.9
NH1	C2	HC23	HC22	240.0	240.0
HC23	C2	NH1	CZ	246.2	150.0
HC21	C2	HC23	HC22	120.0	120.0
H	N	CA	H2	239.9	236.0
CB	CA	N	C	238.7	240.0
CB	CA	N	HA	119.0	120.1
N	CA	CB	CG	302.9	295.0
N	CA	CB	HCB1	63.6	55.0
N	CA	CB	HCB2	182.3	175.0
C	CA	N	HA	240.3	240.0
N	CA	C	O	341.2	340.0
N	CA	C	OXT	161.7	159.9
CA	N	H	H2	120.0	123.9
H	N	CA	CB	180.0	176.1
H	N	CA	C	301.3	296.1
H	N	CA	HA	61.0	56.0
CA	N	H2	H	239.9	236.0
H2	N	CA	CB	300.0	300.1
H2	N	CA	C	61.3	60.1
H2	N	CA	HA	181.0	180.0
CB	CA	N	H	180.0	176.1
CB	CA	N	H2	300.0	300.1
N	CA	CB	C	122.3	120.0
N	CA	CB	HA	240.7	240.0
C	CA	CB	HA	118.4	120.1
CB	CA	C	O	102.8	100.0
CB	CA	C	OXT	283.3	279.9
CG	CB	CA	HCB1	239.4	240.0
CG	CB	CA	HCB2	120.6	119.9
CA	CB	CG	CD	167.3	180.0
CA	CB	CG	HCG1	287.5	300.0
CA	CB	CG	HCG2	47.1	60.0
HCB1	CB	CA	HCB2	241.3	239.9
C	CA	N	H	301.3	296.1
C	CA	N	H2	61.3	60.1
N	CA	C	CB	238.4	240.0
N	CA	C	HA	120.0	119.9
CB	CA	C	HA	241.6	239.9
C	CA	CB	CG	180.6	175.0
C	CA	CB	HCB1	301.3	295.0
C	CA	CB	HCB2	60.0	55.1
O	C	CA	OXT	179.5	180.1
CA	C	OXT	HXT	179.5	179.9
HA	CA	N	H	61.0	56.0
HA	CA	N	H2	181.0	180.0
N	CA	HA	CB	119.8	120.0
N	CA	HA	C	238.7	240.1
CB	CA	HA	C	118.9	120.0
HA	CA	CB	CG	62.2	54.9
HA	CA	CB	HCB1	182.9	175.0
HA	CA	CB	HCB2	301.6	295.0
HA	CA	C	O	221.2	220.1
HA	CA	C	OXT	41.7	40.0
CG	CB	CA	C	180.6	175.0
CG	CB	CA	HA	62.2	54.9
CA	CB	CG	HCB1	120.6	120.1
CA	CB	CG	HCB2	239.4	240.0
HCB1	CB	CG	HCB2	118.8	120.0
CD	CG	CB	HCG1	239.8	240.0
CD	CG	CB	HCG2	120.2	120.0
CB	CG	CD	NE	308.7	180.0
CB	CG	CD	HCD1	69.0	300.1
CB	CG	CD	HCD2	188.4	60.0
HCG1	CG	CB	HCG2	240.4	240.0
HCB1	CB	CA	C	301.3	295.0
HCB1	CB	CA	HA	182.9	175.0
CA	CB	HCB1	CG	236.1	240.0
CA	CB	HCB1	HCB2	118.0	120.1
CG	CB	HCB1	HCB2	241.9	240.1
HCB1	CB	CG	CD	46.7	59.9
HCB1	CB	CG	HCG1	166.9	180.0
HCB1	CB	CG	HCG2	286.5	300.0
HCB2	CB	CA	C	60.0	55.1
HCB2	CB	CA	HA	301.6	295.0
CA	CB	HCB2	CG	123.9	120.0
CA	CB	HCB2	HCB1	242.0	239.9
CG	CB	HCB2	HCB1	118.1	119.9
HCB2	CB	CG	CD	287.9	300.0
HCB2	CB	CG	HCG1	48.1	60.0
HCB2	CB	CG	HCG2	167.7	180.0
CD	CG	CB	HCB1	46.7	59.9
CD	CG	CB	HCB2	287.9	300.0
CB	CG	CD	HCG1	120.2	120.1
CB	CG	CD	HCG2	239.8	240.1
HCG1	CG	CD	HCG2	119.6	120.0
NE	CD	CG	HCD1	239.7	240.0
NE	CD	CG	HCD2	120.3	120.0
CG	CD	NE	CZ	164.1	180.0
CG	CD	NE	HNE	344.1	0.0
HCD1	CD	CG	HCD2	240.7	240.0
HCG1	CG	CB	HCB1	166.9	180.0
HCG1	CG	CB	HCB2	48.1	60.0
CB	CG	HCG1	CD	238.7	239.9
CB	CG	HCG1	HCG2	119.3	119.9
CD	CG	HCG1	HCG2	240.7	240.0
HCG1	CG	CD	NE	188.5	60.0
HCG1	CG	CD	HCD1	308.8	180.0
HCG1	CG	CD	HCD2	68.2	300.0
HCG2	CG	CB	HCB1	286.5	300.0
HCG2	CG	CB	HCB2	167.7	180.0
CB	CG	HCG2	CD	121.4	120.0
CB	CG	HCG2	HCG1	240.7	240.0
CD	CG	HCG2	HCG1	119.3	120.0
HCG2	CG	CD	NE	68.9	299.9
HCG2	CG	CD	HCD1	189.2	60.0
HCG2	CG	CD	HCD2	308.6	180.0
NE	CD	CG	HCG1	188.5	60.0
NE	CD	CG	HCG2	68.9	299.9
CG	CD	NE	HCD1	120.3	120.0
CG	CD	NE	HCD2	239.7	240.1
HCD1	CD	NE	HCD2	119.4	120.0
CZ	NE	CD	HNE	180.0	180.0
CD	NE	CZ	NH2	181.1	0.0
CD	NE	CZ	NH1	359.6	180.0
HCD1	CD	CG	HCG1	308.8	180.0
HCD1	CD	CG	HCG2	189.2	60.0
CG	CD	HCD1	NE	238.0	240.0
CG	CD	HCD1	HCD2	119.0	119.9
NE	CD	HCD1	HCD2	241.0	240.0
HCD1	CD	NE	CZ	43.8	60.0
HCD1	CD	NE	HNE	223.7	240.0
HCD2	CD	CG	HCG1	68.2	300.0
HCD2	CD	CG	HCG2	308.6	180.0
CG	CD	HCD2	NE	122.0	120.0
CG	CD	HCD2	HCD1	241.0	240.0
NE	CD	HCD2	HCD1	119.0	120.0
HCD2	CD	NE	CZ	284.4	300.0
HCD2	CD	NE	HNE	104.4	120.0
C1	NH1	CZ	NE	26.5	180.0
C2	NH1	CZ	NE	199.9	0.0
CZ	NE	CD	HCD1	43.8	60.0
CZ	NE	CD	HCD2	284.4	300.0
CD	NE	CZ	HNE	180.0	180.0
NH2	CZ	NE	NH1	181.5	180.0
NE	CZ	NH2	HNH2	178.6	179.9
HNE	NE	CD	HCD1	223.7	240.0
HNE	NE	CD	HCD2	104.4	120.0
CD	NE	HNE	CZ	180.0	180.0
HNE	NE	CZ	NH2	1.2	180.0
HNE	NE	CZ	NH1	179.7	360.0
C1	NH1	CZ	NH2	205.0	360.0
C2	NH1	CZ	NH2	18.4	180.0
NH2	CZ	NE	HNE	1.2	180.0
NE	CZ	NH2	NH1	178.6	180.0
CZ	NH1	C1	HC11	353.4	270.0
CZ	NH1	C1	HC12	113.4	30.1
CZ	NH1	C1	HC13	233.4	150.0
C1	NH1	CZ	C2	186.6	179.9
CZ	NH1	C2	HC21	6.2	269.9
CZ	NH1	C2	HC22	126.2	30.0
CZ	NH1	C2	HC23	246.2	150.0
NH1	CZ	NE	HNE	179.7	360.0
NE	CZ	NH1	NH2	181.5	180.0
NH1	CZ	NH2	HNH2	0.0	359.9
HNH2	NH2	CZ	NH1	0.0	359.9
O	C	CA	HA	221.2	220.1
CA	C	O	OXT	180.6	179.9
O	C	OXT	HXT	0.0	359.8
OXT	C	CA	HA	41.7	40.0
CA	C	OXT	O	179.5	180.1