PDB Chemical Component D9Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D9Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	S1	1.433	1.422
S1	O1	1.426	1.421
S1	N3	1.586	1.656
S1	C8	1.647	1.762
C8	S2	1.715	1.714
C8	N2	1.345	1.294
S2	C7	1.732	1.764
N2	N1	1.371	1.263
N1	C7	1.343	1.306
C7	C1	1.396	1.479
C1	C6	1.387	1.395
C1	C2	1.364	1.396
C6	C5	1.408	1.380
C2	C3	1.377	1.381
C2	CL1	1.697	1.736
C3	C4	1.400	1.384
C4	C5	1.384	1.383
N3	HN3	1.000	0.969
N3	HN3A	1.000	0.970
C6	H6	1.080	1.080
C3	H3	1.080	1.080
C4	H4	1.080	1.080
C5	H5	1.080	1.080

Bond Angles for D9Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	S1	O1	113.8	123.2
O2	S1	N3	110.7	106.4
O2	S1	C8	105.2	106.4
O1	S1	N3	109.5	106.4
O1	S1	C8	104.3	106.4
N3	S1	C8	113.2	107.2
S1	N3	HN3	109.5	120.0
S1	N3	HN3A	109.4	120.0
S1	C8	S2	130.9	125.5
S1	C8	N2	115.7	125.5
S2	C8	N2	113.3	108.9
C8	S2	C7	90.0	89.4
C8	N2	N1	110.7	117.9
S2	C7	N1	109.9	107.5
S2	C7	C1	129.0	126.2
N2	N1	C7	116.0	116.3
N1	C7	C1	121.1	126.2
C7	C1	C6	121.0	120.1
C7	C1	C2	119.3	120.1
C6	C1	C2	119.7	119.7
C1	C6	C5	118.3	119.9
C1	C6	H6	120.9	120.1
C1	C2	C3	123.8	119.8
C1	C2	CL1	132.1	120.1
C6	C5	C4	120.5	120.2
C5	C6	H6	120.8	120.0
C6	C5	H5	119.7	120.0
C3	C2	CL1	104.1	120.1
C2	C3	C4	116.7	120.2
C2	C3	H3	121.6	119.9
C3	C4	C5	120.9	120.3
C4	C3	H3	121.7	119.9
C3	C4	H4	119.6	119.9
C5	C4	H4	119.5	119.9
C4	C5	H5	119.7	119.9
HN3	N3	HN3A	109.5	120.0

Torsion Angles for D9Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	S1	O2	N3	236.1	237.0
O1	S1	O2	C8	113.5	122.9
N3	S1	O2	C8	237.4	245.9
O2	S1	N3	HN3	76.8	113.5
O2	S1	N3	HN3A	196.8	293.5
O2	S1	C8	S2	353.3	66.5
O2	S1	C8	N2	177.2	246.1
O2	S1	O1	N3	124.5	123.0
O2	S1	O1	C8	246.0	237.1
N3	S1	O1	C8	121.5	114.1
O1	S1	N3	HN3	203.1	246.5
O1	S1	N3	HN3A	323.1	66.4
O1	S1	C8	S2	233.3	293.6
O1	S1	C8	N2	57.2	113.2
O2	S1	N3	O1	233.8	227.0
O2	S1	N3	C8	117.8	113.5
O1	S1	N3	C8	244.1	246.5
N3	S1	C8	S2	114.3	180.0
N3	S1	C8	N2	298.2	359.6
HN3	N3	S1	HN3A	240.0	180.0
O2	S1	C8	O1	120.0	132.9
O2	S1	C8	N3	239.0	246.5
O1	S1	C8	N3	119.0	113.6
C8	S1	N3	HN3	319.0	0.0
C8	S1	N3	HN3A	79.0	180.0
S2	C8	S1	N2	176.1	180.4
S1	C8	S2	C7	186.2	180.0
S1	C8	N2	N1	173.8	180.0
S1	C8	S2	N2	183.8	179.7
S2	C8	N2	N1	357.0	359.7
C8	S2	C7	N1	359.0	359.8
C8	S2	C7	C1	181.0	180.0
S1	C8	N2	S2	176.8	180.3
N2	C8	S2	C7	2.4	0.3
C8	N2	N1	C7	2.3	0.1
C7	S2	C8	N2	2.4	0.3
N2	N1	C7	S2	359.5	0.1
N1	C7	S2	C1	178.0	179.8
S2	C7	C1	C6	178.9	180.0
S2	C7	C1	C2	359.6	359.7
S2	C7	N1	N2	359.5	0.1
N2	N1	C7	C1	177.7	179.9
S2	C7	N1	C1	181.8	180.2
N1	C7	C1	C6	1.0	0.2
N1	C7	C1	C2	181.8	180.0
S2	C7	C1	N1	177.8	179.8
C6	C1	C7	C2	179.2	180.3
C7	C1	C6	C5	179.7	180.0
C7	C1	C6	H6	359.7	359.9
C7	C1	C2	C3	181.4	180.0
C7	C1	C2	CL1	0.8	0.0
C7	C1	C6	C2	180.8	179.7
C6	C1	C2	C3	2.1	359.7
C6	C1	C2	CL1	181.6	179.7
C1	C6	C5	C4	359.6	360.0
C5	C6	C1	H6	180.0	180.1
C1	C6	C5	H5	179.6	180.0
C7	C1	C2	C6	179.2	180.3
C2	C1	C6	C5	358.9	0.3
C2	C1	C6	H6	178.9	180.2
C3	C2	C1	CL1	180.6	180.0
C1	C2	C3	C4	358.5	0.0
C1	C2	C3	H3	178.4	180.0
C5	C6	C1	C2	358.9	0.3
C1	C6	C5	H6	180.0	179.9
C3	C4	C5	C6	0.9	359.8
C6	C5	C4	H4	180.9	180.0
C4	C5	C6	H5	180.0	180.0
C1	C2	C3	CL1	179.6	180.0
C2	C3	C4	C5	360.0	0.2
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	H4	180.0	180.0
C1	C2	CL1	C3	180.5	180.0
CL1	C2	C3	C4	178.9	180.0
CL1	C2	C3	H3	358.9	360.0
C6	C5	C4	C3	0.9	359.8
C4	C3	C2	CL1	178.9	180.0
C2	C3	C4	H3	180.0	179.9
C5	C4	C3	H4	180.0	180.2
C3	C4	C5	H5	181.0	179.8
C4	C5	C6	H6	179.6	180.0
C6	C5	C4	H5	180.0	180.0
C5	C4	C3	H3	180.0	180.3
C3	C4	C5	H4	180.0	179.8
HN3	N3	S1	C8	319.0	0.0
S1	N3	HN3	HN3A	120.0	180.0
HN3A	N3	S1	C8	79.0	180.0
S1	N3	HN3A	HN3	240.0	180.0
H6	C6	C1	C2	178.9	180.2
C1	C6	H6	C5	180.0	180.1
H6	C6	C5	C4	179.6	180.0
H6	C6	C5	H5	359.6	0.0
H3	C3	C2	CL1	358.9	360.0
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C5	180.0	180.3
H3	C3	C4	H4	360.0	0.1
C3	C4	H4	C5	180.0	180.2
H4	C4	C3	H3	360.0	0.1
H4	C4	C5	H5	1.0	359.9
C6	C5	H5	C4	180.0	180.0
H5	C5	C6	H6	359.6	0.0
H5	C5	C4	H4	1.0	359.9