PDB Chemical Component D98

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D98

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.378	1.383
C1	C6	1.388	1.395
C2	C3	1.388	1.400
C2	OAE	1.402	1.358
C3	C4	1.382	1.395
C3	C7	1.420	1.481
C4	C5	1.431	1.376
C5	C6	1.443	1.397
C6	C25	1.428	1.479
C7	C8	1.358	1.396
C7	C12	1.400	1.397
C8	C9	1.386	1.377
C9	C10	1.344	1.397
C10	C11	1.375	1.397
C10	C13	1.446	1.478
C11	C12	1.421	1.376
C13	N14	1.335	1.369
C13	N17	1.351	1.311
N14	C15	1.362	1.379
C15	C16	1.405	1.408
C15	C19	1.368	1.390
C16	N17	1.358	1.356
C16	C18	1.435	1.395
C18	C21	1.407	1.390
C19	C20	1.360	1.366
C20	C21	1.354	1.400
C21	C22	1.418	1.480
C22	N23	1.346	1.303
C22	N24	1.323	1.378
C25	N26	1.343	1.303
C25	N27	1.355	1.378
C1	H1	1.080	1.080
OAE	HAE	0.950	0.967
C4	H4	1.080	1.080
C5	H5	1.080	1.080
C8	H8	1.080	1.080
C12	H12	1.080	1.080
C9	H9	1.080	1.081
C11	H11	1.080	1.080
N14	H14	0.999	0.970
C19	H19	1.080	1.080
C18	H18	1.080	1.080
C20	H20	1.080	1.080
N23	H23	1.000	0.970
N24	H241	1.000	0.970
N24	H242	1.000	0.970
N26	H26	1.000	0.970
N27	H271	1.000	0.970
N27	H272	1.000	0.970

Bond Angles for D98

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	118.4	120.0
C1	C2	C3	125.0	119.9
C1	C2	OAE	114.0	120.1
C2	C1	H1	120.8	120.0
C1	C6	C5	115.8	120.0
C1	C6	C25	118.1	120.0
C6	C1	H1	120.8	120.0
C3	C2	OAE	121.0	120.1
C2	C3	C4	121.1	120.0
C2	C3	C7	121.0	120.0
C2	OAE	HAE	109.5	114.0
C4	C3	C7	117.9	120.0
C3	C4	C5	113.6	120.1
C3	C4	H4	123.2	119.9
C3	C7	C8	117.3	120.0
C3	C7	C12	125.7	120.0
C4	C5	C6	126.1	120.1
C5	C4	H4	123.2	120.0
C4	C5	H5	117.0	120.0
C5	C6	C25	126.1	120.0
C6	C5	H5	116.9	119.9
C6	C25	N26	123.6	120.0
C6	C25	N27	120.8	120.0
C8	C7	C12	117.0	120.0
C7	C8	C9	124.2	120.0
C7	C8	H8	117.9	120.0
C7	C12	C11	119.1	120.0
C7	C12	H12	120.5	120.0
C8	C9	C10	118.8	120.0
C9	C8	H8	117.9	120.0
C8	C9	H9	120.6	120.0
C9	C10	C11	120.5	119.9
C9	C10	C13	113.4	120.0
C10	C9	H9	120.6	120.0
C11	C10	C13	126.1	120.1
C10	C11	C12	120.4	120.1
C10	C11	H11	119.8	120.0
C10	C13	N14	130.2	125.1
C10	C13	N17	124.6	125.1
C11	C12	H12	120.4	120.0
C12	C11	H11	119.8	120.0
N14	C13	N17	105.1	109.8
C13	N14	C15	110.3	107.3
C13	N14	H14	124.9	126.4
C13	N17	C16	113.6	109.6
N14	C15	C16	108.2	106.2
N14	C15	C19	130.0	133.7
C15	N14	H14	124.9	126.3
C16	C15	C19	121.8	120.1
C15	C16	N17	102.8	107.2
C15	C16	C18	119.5	119.5
C15	C19	C20	117.3	120.2
C15	C19	H19	121.3	119.9
N17	C16	C18	137.7	133.3
C16	C18	C21	116.7	119.6
C16	C18	H18	121.6	120.3
C18	C21	C20	120.0	120.2
C18	C21	C22	127.0	119.9
C21	C18	H18	121.7	120.2
C19	C20	C21	124.6	120.5
C20	C19	H19	121.3	119.9
C19	C20	H20	117.7	119.7
C20	C21	C22	112.9	119.9
C21	C20	H20	117.7	119.8
C21	C22	N23	125.1	120.0
C21	C22	N24	117.1	120.0
N24	C22	N23	117.7	120.0
C22	N23	H23	112.0	120.0
C22	N24	H241	120.0	120.0
C22	N24	H242	120.0	120.0
N26	C25	N27	115.4	120.0
C25	N26	H26	112.0	120.1
C25	N27	H271	120.0	120.0
C25	N27	H272	120.0	120.0
H241	N24	H242	120.0	120.0
H271	N27	H272	120.0	120.0

Torsion Angles for D98

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	C5	359.9	0.0
C2	C1	C6	C25	179.6	180.0
C6	C1	C2	H1	180.0	180.3
C3	C2	C1	OAE	179.1	180.1
C1	C2	C3	C4	1.7	0.0
C1	C2	C3	C7	182.3	180.0
C1	C2	OAE	HAE	180.0	90.0
C6	C1	C2	C3	359.0	0.0
C6	C1	C2	OAE	179.9	180.0
C2	C1	C6	H1	180.0	179.7
C4	C5	C6	C1	0.4	359.9
C5	C6	C1	C25	180.3	180.0
C1	C6	C5	H5	180.4	180.0
C1	C6	C25	N26	151.2	0.0
C1	C6	C25	N27	326.5	180.0
C3	C2	C1	C6	359.0	0.0
C1	C2	C3	OAE	180.9	179.9
C3	C2	C1	H1	179.0	179.7
C3	C2	OAE	HAE	0.8	270.0
C4	C3	C2	C7	179.4	180.1
C2	C3	C4	C5	358.7	359.9
C2	C3	C4	H4	178.7	180.0
C2	C3	C7	C8	211.2	130.0
C2	C3	C7	C12	33.2	309.7
OAE	C2	C1	C6	179.9	180.0
C1	C2	OAE	C3	179.2	180.1
OAE	C2	C1	H1	359.9	359.6
OAE	C2	C3	C4	180.8	180.1
OAE	C2	C3	C7	1.4	0.0
C4	C3	C2	OAE	180.8	180.1
C2	C3	C4	C7	180.6	179.9
C4	C3	C7	C8	31.8	309.9
C4	C3	C7	C12	213.8	129.7
C3	C4	C5	C6	0.3	0.1
C5	C4	C3	H4	180.0	179.9
C3	C4	C5	H5	180.3	180.0
C7	C3	C2	OAE	1.4	0.0
C2	C3	C7	C4	179.4	180.1
C7	C3	C4	C5	178.2	180.0
C7	C3	C4	H4	358.2	0.1
C8	C7	C3	C12	178.0	180.2
C3	C7	C8	C9	183.1	180.0
C3	C7	C8	H8	3.1	360.0
C3	C7	C12	C11	177.4	179.8
C3	C7	C12	H12	357.3	0.0
C1	C6	C5	C4	0.4	359.9
C5	C4	C3	C7	178.2	180.0
C3	C4	C5	H4	180.0	180.1
C4	C5	C6	C25	180.7	180.0
C6	C5	C4	H5	180.0	180.1
C1	C6	C5	C25	179.7	180.0
C5	C6	C1	H1	179.9	180.3
C6	C5	C4	H4	180.3	180.0
C4	C5	C6	H5	180.0	179.9
C5	C6	C25	N26	330.8	180.0
C5	C6	C25	N27	146.2	360.0
C1	C6	C25	C5	180.3	180.0
C25	C6	C1	H1	359.6	0.3
C25	C6	C5	H5	0.7	0.1
N26	C25	C6	N27	184.6	180.0
C6	C25	N26	H26	175.6	180.0
C6	C25	N27	H271	184.2	360.0
C6	C25	N27	H272	4.3	180.0
C3	C7	C8	C12	181.8	179.8
C8	C7	C12	C11	359.4	359.5
C8	C7	C12	H12	179.3	179.8
C7	C8	C9	C10	358.3	0.0
C9	C8	C7	H8	180.0	180.0
C7	C8	C9	H9	178.2	180.0
C3	C7	C12	C8	178.0	180.2
C12	C7	C8	C9	1.3	0.2
C12	C7	C8	H8	181.3	180.2
C10	C11	C12	C7	0.4	0.5
C11	C12	C7	H12	180.0	179.8
C7	C12	C11	H11	180.4	180.3
C9	C8	C7	C12	1.3	0.2
C7	C8	C9	H8	180.0	180.0
C8	C9	C10	C11	1.4	360.0
C8	C9	C10	C13	181.9	180.0
C10	C9	C8	H9	180.0	180.1
C10	C9	C8	H8	178.3	180.0
C8	C9	C10	H9	180.0	179.9
C11	C10	C9	C13	179.5	180.0
C9	C10	C11	C12	359.2	359.8
C9	C10	C11	H11	179.2	180.0
C9	C10	C13	N14	188.2	180.0
C9	C10	C13	N17	5.6	359.7
C7	C12	C11	C10	0.4	0.5
C9	C10	C11	C13	180.5	180.0
C11	C10	C9	H9	181.4	180.0
C11	C10	C13	N14	8.7	0.0
C11	C10	C13	N17	186.1	179.7
C10	C11	C12	H12	180.4	180.2
C12	C11	C10	H11	180.0	179.8
C9	C10	C13	C11	179.5	180.0
C13	C10	C9	H9	1.9	0.0
C13	C10	C11	C12	178.7	179.8
C13	C10	C11	H11	358.7	360.0
N14	C13	C10	N17	182.6	180.3
C10	C13	N14	C15	179.4	180.0
C10	C13	N14	H14	359.3	359.9
C10	C13	N17	C16	181.3	179.9
C7	C12	C11	H12	180.0	180.2
C12	C11	C10	C13	178.7	179.8
C10	C11	C12	H11	180.0	180.2
C10	C13	N14	N17	177.8	179.7
N14	C13	N17	C16	359.2	359.6
C13	N14	C15	C16	358.2	0.0
C13	N14	C15	C19	180.0	180.0
C15	N14	C13	H14	180.0	180.1
C10	C13	N17	N14	182.1	180.3
N17	C13	N14	C15	1.6	0.3
N17	C13	N14	H14	181.5	180.2
C15	C16	N17	C13	359.7	0.4
C13	N17	C16	C18	183.5	180.1
C15	N14	C13	N17	1.6	0.3
C13	N14	C15	H14	180.0	179.9
C16	C15	N14	C19	178.2	180.0
N14	C15	C16	N17	1.2	359.7
N14	C15	C16	C18	178.3	180.0
N14	C15	C19	C20	180.1	180.0
N14	C15	C19	H19	0.1	359.9
C13	N17	C16	C15	359.7	0.4
N14	C15	C16	C19	181.7	180.0
C16	C15	N14	H14	178.2	180.1
C16	C15	C19	C20	2.1	360.0
C16	C15	C19	H19	182.1	179.9
N17	C16	C15	C18	182.9	179.7
C15	C16	C18	C21	3.3	360.0
C15	C16	C18	H18	183.4	180.0
N14	C15	C19	C16	177.9	180.0
C19	C15	N14	H14	0.0	0.0
C19	C15	C16	N17	179.6	179.7
C19	C15	C16	C18	356.6	0.0
C15	C19	C20	C21	358.9	0.0
C20	C19	C15	H19	180.0	180.1
C15	C19	C20	H20	178.9	180.0
N17	C16	C15	C19	179.6	179.7
C15	C16	N17	C18	176.2	180.3
N17	C16	C18	C21	179.1	180.3
N17	C16	C18	H18	359.1	0.3
C18	C16	C15	C19	356.6	0.0
C15	C16	C18	N17	184.3	179.7
C16	C18	C21	C20	357.7	0.0
C16	C18	C21	C22	179.2	180.0
C21	C18	C16	H18	180.0	180.0
C16	C18	C21	H18	180.0	180.0
C19	C20	C21	C18	1.2	360.0
C20	C21	C18	C22	178.4	180.0
C18	C21	C20	H20	181.2	180.0
C18	C21	C22	N23	217.2	0.0
C18	C21	C22	N24	33.8	180.0
C15	C19	C20	H19	180.0	179.9
C18	C21	C20	C19	1.2	360.0
C19	C20	C21	C22	179.9	180.0
C21	C20	C19	H20	180.0	180.0
C18	C21	C20	C22	181.4	180.0
C20	C21	C18	H18	177.7	180.0
C21	C20	C19	H19	178.9	180.1
C19	C20	C21	H20	180.0	180.0
C20	C21	C22	N23	38.7	180.0
C20	C21	C22	N24	215.3	360.0
C18	C21	C22	C20	178.5	180.0
C22	C21	C18	H18	359.2	360.0
C22	C21	C20	H20	359.9	0.1
N24	C22	C21	N23	176.6	180.0
C21	C22	N23	H23	176.6	180.0
C21	C22	N24	H241	183.1	360.0
C21	C22	N24	H242	3.2	180.1
C21	C22	N23	N24	176.6	180.0
N23	C22	N24	H241	360.0	180.0
N23	C22	N24	H242	180.0	0.1
C21	C22	N24	N23	183.2	180.0
N24	C22	N23	H23	360.0	0.0
H241	N24	C22	H242	180.0	179.9
C6	C25	N26	N27	175.6	180.0
N26	C25	N27	H271	360.0	180.0
N26	C25	N27	H272	180.0	0.0
C6	C25	N27	N26	184.3	180.0
N27	C25	N26	H26	360.0	360.0
H271	N27	C25	H272	180.0	180.0
C2	C1	H1	C6	180.0	180.3
H1	C1	C2	C3	179.0	179.7
H1	C1	C2	OAE	359.9	359.6
H1	C1	C6	C5	179.9	180.3
H1	C1	C6	C25	359.6	0.3
H4	C4	C3	C7	358.2	0.1
C3	C4	H4	C5	180.0	179.9
H4	C4	C5	C6	180.3	180.0
H4	C4	C5	H5	0.3	359.9
C4	C5	H5	C6	180.0	180.1
H5	C5	C4	H4	0.3	359.9
H5	C5	C6	C25	0.7	0.1
H8	C8	C7	C12	181.3	180.2
C7	C8	H8	C9	180.0	180.0
H8	C8	C9	C10	178.3	180.0
H8	C8	C9	H9	358.3	360.0
C7	C12	H12	C11	180.0	179.8
H12	C12	C11	H11	0.4	0.0
C8	C9	H9	C10	180.0	180.1
H9	C9	C8	H8	358.3	360.0
H9	C9	C10	C11	181.4	180.0
H9	C9	C10	C13	1.9	0.0
H11	C11	C10	C13	358.7	360.0
C10	C11	H11	C12	180.0	179.8
H11	C11	C12	H12	0.4	0.0
H14	N14	C13	N17	181.5	180.2
C13	N14	H14	C15	180.0	180.1
H14	N14	C15	C16	178.2	180.1
H14	N14	C15	C19	0.0	0.0
C15	C19	H19	C20	180.0	180.1
H19	C19	C20	C21	178.9	180.1
H19	C19	C20	H20	358.9	0.0
C16	C18	H18	C21	180.0	180.0
H18	C18	C21	C20	177.7	180.0
H18	C18	C21	C22	359.2	360.0
C19	C20	H20	C21	180.0	180.0
H20	C20	C19	H19	358.9	0.0
H20	C20	C21	C22	359.9	0.1
H241	N24	C22	N23	360.0	180.0
C22	N24	H241	H242	180.0	180.1
H242	N24	C22	N23	180.0	0.1
C22	N24	H242	H241	180.0	179.9
H26	N26	C25	N27	360.0	360.0
C25	N27	H271	H272	180.0	180.0
C25	N27	H272	H271	180.0	180.0