PDB Chemical Component D8W

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D8W

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.392	1.382
C1	C6	1.386	1.382
C2	C3	1.393	1.383
C3	C4	1.391	1.383
C4	C5	1.399	1.383
C5	C6	1.385	1.382
C6	S1	1.614	1.762
S1	O1	1.452	1.421
S1	O2	1.486	1.421
S1	N1	1.514	1.656
N1	C7	1.358	1.386
C7	S2	1.708	1.765
C7	N2	1.355	1.303
S2	C8	1.732	1.765
N2	N3	1.421	1.262
N3	C8	1.344	1.293
C8	S3	1.668	1.761
S3	O3	1.433	1.422
S3	O4	1.411	1.421
S3	N4	1.584	1.656
C1	H1	1.080	1.080
C2	H2	1.080	1.080
C3	H3	1.080	1.079
C4	H4	1.080	1.080
C5	H5	1.080	1.081
N1	HN1	1.000	0.970
N4	HN4	1.000	0.970
N4	HN4A	1.000	0.970

Bond Angles for D8W

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	119.1	120.0
C1	C2	C3	118.4	120.0
C2	C1	H1	120.5	120.0
C1	C2	H2	120.8	120.0
C1	C6	C5	123.1	120.0
C1	C6	S1	117.9	120.0
C6	C1	H1	120.4	120.0
C2	C3	C4	122.2	120.0
C3	C2	H2	120.8	120.0
C2	C3	H3	118.9	120.0
C3	C4	C5	119.4	120.0
C4	C3	H3	118.9	120.0
C3	C4	H4	120.3	120.0
C4	C5	C6	117.8	120.0
C5	C4	H4	120.3	120.1
C4	C5	H5	121.1	119.9
C5	C6	S1	118.9	120.0
C6	C5	H5	121.1	120.0
C6	S1	O1	105.1	106.4
C6	S1	O2	109.5	106.4
C6	S1	N1	104.5	107.2
O1	S1	O2	109.8	123.1
O1	S1	N1	119.1	106.4
O2	S1	N1	108.4	106.4
S1	N1	C7	128.0	120.0
S1	N1	HN1	103.7	120.0
N1	C7	S2	123.8	126.2
N1	C7	N2	123.3	126.2
C7	N1	HN1	103.7	120.0
S2	C7	N2	112.9	107.7
C7	S2	C8	90.8	88.9
C7	N2	N3	111.4	117.6
S2	C8	N3	111.4	107.8
S2	C8	S3	122.8	126.1
N2	N3	C8	113.5	118.0
N3	C8	S3	124.8	126.1
C8	S3	O3	106.5	106.4
C8	S3	O4	106.8	106.4
C8	S3	N4	108.0	107.2
O3	S3	O4	112.1	123.1
O3	S3	N4	110.0	106.4
O4	S3	N4	113.1	106.4
S3	N4	HN4	109.5	120.0
S3	N4	HN4A	109.5	120.0
HN4	N4	HN4A	109.4	120.0

Torsion Angles for D8W

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	C5	357.6	0.1
C2	C1	C6	S1	181.6	180.0
C6	C1	C2	H1	180.0	180.3
C1	C2	C3	C4	0.6	359.9
C3	C2	C1	H2	180.0	180.1
C1	C2	C3	H3	180.6	179.9
C6	C1	C2	C3	1.1	0.0
C2	C1	C6	H1	180.0	179.7
C6	C1	C2	H2	181.1	179.9
C4	C5	C6	C1	1.8	359.9
C5	C6	C1	S1	176.0	180.1
C1	C6	C5	H5	181.8	180.0
C1	C6	S1	O1	27.2	203.6
C1	C6	S1	O2	145.1	336.5
C1	C6	S1	N1	261.0	90.0
C3	C2	C1	C6	1.1	0.0
C3	C2	C1	H1	181.1	179.7
C1	C2	C3	H2	180.0	179.9
C2	C3	C4	C5	358.8	360.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	H4	178.8	180.0
C4	C3	C2	H2	180.6	180.1
C2	C3	C4	H3	180.0	180.0
C3	C4	C5	C6	360.0	0.1
C5	C4	C3	H4	180.0	180.0
C3	C4	C5	H5	180.0	180.0
C1	C6	C5	C4	1.8	359.9
C5	C4	C3	H3	178.8	180.0
C3	C4	C5	H4	180.0	180.0
C4	C5	C6	S1	177.8	180.0
C6	C5	C4	H5	180.0	180.1
C1	C6	C5	S1	184.0	179.9
C5	C6	C1	H1	177.7	180.4
C6	C5	C4	H4	180.0	180.1
C4	C5	C6	H5	180.0	179.9
C5	C6	S1	O1	210.9	23.5
C5	C6	S1	O2	328.8	156.4
C5	C6	S1	N1	84.8	269.9
C1	C6	S1	C5	176.2	180.1
S1	C6	C1	H1	1.6	0.3
S1	C6	C5	H5	357.8	0.1
O1	S1	C6	O2	242.1	227.1
O1	S1	C6	N1	126.1	113.6
O2	S1	C6	N1	244.0	246.5
C6	S1	N1	C7	101.5	65.0
C6	S1	N1	HN1	221.5	245.0
C6	S1	O1	O2	117.7	123.0
C6	S1	O1	N1	243.4	245.9
O2	S1	O1	N1	125.8	122.9
O1	S1	N1	C7	344.7	311.5
O1	S1	N1	HN1	104.7	131.4
C6	S1	O2	O1	245.1	237.0
C6	S1	O2	N1	113.5	114.1
O1	S1	O2	N1	228.4	237.1
O2	S1	N1	C7	218.2	178.6
O2	S1	N1	HN1	338.2	358.5
C6	S1	N1	O1	116.8	113.6
C6	S1	N1	O2	243.3	246.5
O1	S1	N1	O2	126.5	132.9
S1	N1	C7	S2	23.9	180.0
S1	N1	C7	N2	203.6	359.6
C7	N1	S1	HN1	240.0	180.0
S1	N1	C7	HN1	120.0	180.0
S2	C7	N1	N2	180.3	180.4
N1	C7	S2	C8	180.2	180.0
N1	C7	N2	N3	179.5	180.0
N1	C7	S2	N2	179.7	179.7
S2	C7	N1	HN1	263.9	0.0
S2	C7	N2	N3	359.3	359.7
C7	S2	C8	N3	359.9	359.8
C7	S2	C8	S3	190.7	180.0
N1	C7	N2	S2	180.3	180.3
N2	C7	N1	HN1	83.6	179.7
N2	C7	S2	C8	0.5	0.3
C7	N2	N3	C8	0.7	0.1
C8	S2	C7	N2	0.5	0.3
N2	N3	C8	S2	359.7	0.1
N3	C8	S2	S3	169.2	179.7
S2	C8	S3	O3	265.7	293.5
S2	C8	S3	O4	25.6	66.4
S2	C8	S3	N4	147.6	180.0
S2	C8	N3	N2	359.7	0.1
N2	N3	C8	S3	168.6	179.9
S2	C8	N3	S3	191.1	180.3
N3	C8	S3	O3	97.9	113.8
N3	C8	S3	O4	217.9	246.7
N3	C8	S3	N4	339.8	0.3
S2	C8	S3	N3	167.7	179.7
O3	S3	C8	O4	240.0	227.1
O3	S3	C8	N4	118.1	113.5
O4	S3	C8	N4	238.0	246.5
C8	S3	N4	HN4	327.3	360.0
C8	S3	N4	HN4A	87.3	180.0
C8	S3	O3	O4	116.5	123.0
C8	S3	O3	N4	243.2	245.9
O4	S3	O3	N4	126.8	122.9
O3	S3	N4	HN4	211.5	246.4
O3	S3	N4	HN4A	331.5	66.5
C8	S3	O4	O3	243.7	237.0
C8	S3	O4	N4	118.7	114.1
O3	S3	O4	N4	234.9	237.1
O4	S3	N4	HN4	85.3	113.5
O4	S3	N4	HN4A	205.3	293.6
C8	S3	N4	O3	115.8	113.5
C8	S3	N4	O4	242.0	246.4
O3	S3	N4	O4	126.2	132.9
HN4	N4	S3	HN4A	240.0	180.0
C2	C1	H1	C6	180.0	180.3
H1	C1	C2	C3	181.1	179.7
H1	C1	C2	H2	1.1	359.6
H1	C1	C6	C5	177.7	180.4
H1	C1	C6	S1	1.6	0.3
H2	C2	C1	C6	181.1	179.9
C1	C2	H2	C3	180.0	180.1
H2	C2	C1	H1	1.1	359.6
H2	C2	C3	C4	180.6	180.1
H2	C2	C3	H3	0.6	0.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C2	H2	0.6	0.0
H3	C3	C4	C5	178.8	180.0
H3	C3	C4	H4	358.8	0.0
C3	C4	H4	C5	180.0	180.0
H4	C4	C3	H3	358.8	0.0
H4	C4	C5	C6	180.0	180.1
H4	C4	C5	H5	0.0	360.0
C4	C5	H5	C6	180.0	180.1
H5	C5	C4	H4	0.0	360.0
H5	C5	C6	S1	357.8	0.1
S1	N1	HN1	C7	224.6	180.0
HN1	N1	C7	S2	263.9	0.0
HN1	N1	C7	N2	83.6	179.7
S3	N4	HN4	HN4A	120.0	180.0
S3	N4	HN4A	HN4	240.0	180.0