PDB Chemical Component D8H

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D8H

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N02 C02 1.363 1.390
C02 C03 1.403 1.391
C02 N01 1.350 1.325
C03 C04 1.388 1.383
C04 C07 1.512 1.507
C04 C05 1.388 1.389
C05 C06 1.383 1.381
N01 C06 1.352 1.319
C06 C08 1.507 1.507
C08 C09 1.519 1.530
C09 C13 1.512 1.506
C13 C12 1.394 1.383
C13 C14 1.395 1.385
C12 N11 1.341 1.318
C14 C15 1.393 1.393
C15 C16 1.392 1.389
C15 N17 1.354 1.397
C16 N11 1.335 1.318
N17 C18 1.455 1.465
C18 C19 1.527 1.529
C19 C20 1.529 1.530
C20 O21 1.434 1.429
O21 C22 1.430 1.429
N02 H021 1.000 0.970
N02 H022 1.000 0.970
C03 H03 1.081 1.080
C07 H071 1.100 1.090
C07 H072 1.100 1.090
C07 H073 1.100 1.089
C05 H05 1.080 1.080
C08 H081 1.100 1.091
C08 H082 1.100 1.090
C09 H091 1.100 1.090
C09 H092 1.100 1.091
C12 H12 1.080 1.080
C14 H14 1.080 1.079
C16 H16 1.080 1.079
N17 H17 1.000 0.970
C18 H181 1.100 1.090
C18 H182 1.100 1.090
C19 H191 1.100 1.090
C19 H192 1.100 1.090
C20 H201 1.100 1.090
C20 H202 1.100 1.090
C22 H221 1.100 1.090
C22 H222 1.100 1.090
C22 H223 1.100 1.090

Bond Angles for D8H

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N02 C02 C03 120.1 119.7
N02 C02 N01 120.0 119.7
C02 N02 H021 109.5 120.0
C02 N02 H022 109.5 120.0
C03 C02 N01 119.9 120.6
C02 C03 C04 119.7 119.1
C02 C03 H03 120.2 120.5
C02 N01 C06 121.0 121.6
C03 C04 C07 121.2 120.8
C03 C04 C05 118.8 118.5
C04 C03 H03 120.1 120.4
C07 C04 C05 120.0 120.7
C04 C07 H071 109.5 109.4
C04 C07 H072 109.5 109.5
C04 C07 H073 109.5 109.5
C04 C05 C06 120.0 119.3
C04 C05 H05 120.0 120.4
C05 C06 N01 120.6 120.9
C05 C06 C08 118.5 119.6
C06 C05 H05 120.0 120.3
N01 C06 C08 120.9 119.6
C06 C08 C09 107.8 109.5
C06 C08 H081 109.9 109.5
C06 C08 H082 109.9 109.5
C08 C09 C13 110.0 109.5
C09 C08 H081 109.9 109.4
C09 C08 H082 109.9 109.4
C08 C09 H091 109.3 109.5
C08 C09 H092 109.3 109.5
C09 C13 C12 118.8 120.4
C09 C13 C14 121.4 120.4
C13 C09 H091 109.3 109.5
C13 C09 H092 109.3 109.5
C12 C13 C14 119.8 119.2
C13 C12 N11 121.1 120.9
C13 C12 H12 119.5 119.5
C13 C14 C15 117.8 118.3
C13 C14 H14 121.1 120.9
C12 N11 C16 120.0 121.8
N11 C12 H12 119.4 119.5
C14 C15 C16 119.5 119.1
C14 C15 N17 121.7 120.5
C15 C14 H14 121.1 120.8
C16 C15 N17 118.8 120.5
C15 C16 N11 121.8 120.6
C15 C16 H16 119.1 119.7
C15 N17 C18 119.0 120.0
C15 N17 H17 107.0 120.0
N11 C16 H16 119.1 119.7
N17 C18 C19 115.3 109.5
C18 N17 H17 107.0 120.0
N17 C18 H181 108.0 109.5
N17 C18 H182 108.0 109.4
C18 C19 C20 109.7 109.5
C19 C18 H181 108.0 109.5
C19 C18 H182 108.0 109.5
C18 C19 H191 109.4 109.5
C18 C19 H192 109.4 109.5
C19 C20 O21 112.5 109.5
C20 C19 H191 109.4 109.5
C20 C19 H192 109.4 109.5
C19 C20 H201 108.7 109.4
C19 C20 H202 108.7 109.4
C20 O21 C22 113.7 114.0
O21 C20 H201 108.7 109.4
O21 C20 H202 108.7 109.5
O21 C22 H221 109.5 109.5
O21 C22 H222 109.5 109.5
O21 C22 H223 109.4 109.5
H021 N02 H022 109.4 120.0
H071 C07 H072 109.5 109.4
H071 C07 H073 109.5 109.5
H072 C07 H073 109.5 109.5
H081 C08 H082 109.5 109.5
H091 C09 H092 109.5 109.4
H181 C18 H182 109.5 109.5
H191 C19 H192 109.5 109.4
H201 C20 H202 109.5 109.6
H221 C22 H222 109.4 109.5
H221 C22 H223 109.5 109.5
H222 C22 H223 109.5 109.4

Torsion Angles for D8H

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 C02 N02 N01 180.5 180.3
N02 C02 C03 C04 179.3 180.0
N02 C02 C03 H03 359.3 360.0
N02 C02 N01 C06 179.8 179.7
H021 N02 C02 H022 240.0 180.2
N02 C02 C03 N01 179.5 179.7
C03 C02 N02 H021 180.5 360.0
C03 C02 N02 H022 300.5 179.8
C03 C02 N01 C06 359.3 359.4
C02 C03 C04 C07 179.8 180.0
C02 C03 C04 C05 0.8 360.0
C04 C03 C02 H03 180.0 180.1
N02 C02 N01 C03 180.5 180.3
N01 C02 N02 H021 0.0 179.7
N01 C02 N02 H022 120.0 359.5
N01 C02 C03 C04 359.8 0.3
N01 C02 C03 H03 179.8 180.3
C05 C06 N01 C02 1.0 0.6
C02 N01 C06 C08 180.0 180.3
C04 C03 C02 N01 359.8 0.3
C02 C03 C04 H03 180.0 179.9
C07 C04 C03 C05 179.0 180.0
C03 C04 C07 H071 90.5 90.0
C03 C04 C07 H072 210.5 210.0
C03 C04 C07 H073 330.5 330.0
C03 C04 C05 C06 359.5 360.0
C03 C04 C05 H05 179.5 180.0
C03 C04 C07 C05 181.0 180.0
C07 C04 C03 H03 359.8 0.1
C07 C04 C05 C06 180.5 180.0
C07 C04 C05 H05 0.5 360.0
H071 C07 C04 H072 240.0 240.0
H071 C07 C04 H073 120.0 120.0
H072 C07 C04 H073 240.0 240.0
C03 C04 C05 C07 179.0 180.0
C05 C04 C03 H03 180.8 180.0
C05 C04 C07 H071 269.5 270.0
C05 C04 C07 H072 29.5 30.0
C05 C04 C07 H073 149.5 150.0
C04 C05 C06 N01 359.6 359.7
C04 C05 C06 C08 180.6 180.0
C06 C05 C04 H05 180.0 180.0
C02 N01 C06 C05 1.0 0.6
C04 C05 C06 H05 180.0 180.0
N01 C06 C05 C08 179.0 179.7
C05 C06 C08 C09 93.0 125.0
C05 C06 C08 H081 212.8 245.0
C05 C06 C08 H082 333.3 5.0
C05 C06 N01 C08 181.0 180.3
N01 C06 C05 H05 179.6 179.7
N01 C06 C08 C09 274.0 305.3
N01 C06 C08 H081 33.8 65.3
N01 C06 C08 H082 154.3 185.3
C05 C06 C08 N01 179.0 179.7
C08 C06 C05 H05 0.6 360.0
C06 C08 C09 C13 176.6 180.0
C09 C08 C06 H081 240.2 240.0
C09 C08 C06 H082 119.7 120.0
C06 C08 C09 H091 296.7 300.0
C06 C08 C09 H092 56.6 60.0
H081 C08 C06 H082 239.5 240.0
C06 C08 C09 H081 119.7 120.0
C06 C08 C09 H082 240.3 239.9
C08 C09 C13 C12 215.3 90.0
C08 C09 C13 C14 34.6 269.7
C13 C09 C08 H091 239.9 239.9
C13 C09 C08 H092 120.1 120.0
H081 C08 C09 H082 120.5 119.9
H091 C09 C08 H092 240.1 240.1
C13 C09 C08 H081 56.9 59.9
C13 C09 C08 H082 296.4 300.0
C08 C09 C13 H091 120.1 120.0
C08 C09 C13 H092 239.9 240.0
C12 C13 C09 C14 180.7 180.4
C09 C13 C12 N11 179.7 180.0
C09 C13 C12 H12 359.6 359.9
C09 C13 C14 C15 180.5 180.0
C09 C13 C14 H14 0.5 0.1
H091 C09 C13 H092 119.8 120.0
C09 C13 C12 C14 179.3 179.6
C12 C13 C09 H091 95.2 330.0
C12 C13 C09 H092 335.4 210.0
C12 C13 C14 C15 359.8 359.6
C12 C13 C14 H14 179.8 179.7
C13 C12 N11 C16 0.1 0.0
N11 C12 C13 H12 180.0 180.1
C09 C13 C14 C12 180.8 180.4
C14 C13 C09 H091 274.5 149.6
C14 C13 C09 H092 154.6 29.7
C14 C13 C12 N11 0.4 0.3
C14 C13 C12 H12 180.4 180.3
C13 C14 C15 C16 359.6 0.1
C13 C14 C15 N17 180.4 180.0
C15 C14 C13 H14 180.0 179.9
N11 C12 C13 C14 0.4 0.3
C13 C12 N11 H12 180.0 179.9
C15 C16 N11 C12 359.3 359.7
C12 N11 C16 H16 179.3 180.0
C13 C14 C15 H14 180.0 180.1
C16 C15 C14 N17 179.2 180.1
C14 C15 C16 N11 0.9 0.2
C14 C15 C16 H16 180.9 179.9
C14 C15 N17 C18 191.2 180.0
C14 C15 N17 H17 312.6 0.1
C12 N11 C16 C15 359.3 359.7
C14 C15 C16 N17 180.7 179.9
C16 C15 C14 H14 179.6 180.0
C16 C15 N17 C18 12.0 359.9
C16 C15 N17 H17 133.3 180.0
N11 C16 C15 H16 180.0 180.3
C14 C15 N17 C16 179.2 180.1
N17 C15 C14 H14 0.4 359.9
N17 C15 C16 N11 180.1 180.4
N17 C15 C16 H16 0.1 0.1
C15 N17 C18 C19 247.4 180.0
C18 N17 C15 H17 238.7 179.9
C15 N17 C18 H181 8.3 300.1
C15 N17 C18 H182 126.6 60.0
C16 N11 C12 H12 180.1 180.1
N11 C16 C15 N17 180.1 180.4
C15 C16 N11 H16 180.0 179.7
C15 N17 C18 H17 121.3 180.1
N17 C18 C19 C20 233.8 180.0
C19 C18 N17 H181 239.1 240.0
C19 C18 N17 H182 120.9 120.0
N17 C18 C19 H191 353.8 300.0
N17 C18 C19 H192 113.7 60.0
H181 C18 N17 H182 241.7 240.0
C19 C18 N17 H17 126.1 359.9
N17 C18 C19 H181 120.9 120.0
N17 C18 C19 H182 239.2 240.0
C18 C19 C20 O21 225.2 180.0
C20 C19 C18 H191 240.0 240.0
C20 C19 C18 H192 120.0 120.0
C18 C19 C20 H201 345.7 300.0
C18 C19 C20 H202 104.8 60.0
H181 C18 C19 H182 118.3 120.0
H191 C19 C18 H192 240.1 240.0
C20 C19 C18 H181 112.9 60.0
C20 C19 C18 H182 354.6 300.0
C18 C19 C20 H191 120.1 120.0
C18 C19 C20 H192 240.0 240.0
C19 C20 O21 C22 48.9 180.0
O21 C20 C19 H201 239.6 240.1
O21 C20 C19 H202 120.4 120.0
H191 C19 C20 H192 119.9 119.9
H201 C20 C19 H202 240.9 239.9
O21 C20 C19 H191 105.2 60.0
O21 C20 C19 H192 345.2 300.0
C19 C20 O21 H201 120.4 119.9
C19 C20 O21 H202 239.5 240.0
C20 O21 C22 H221 180.0 180.0
C20 O21 C22 H222 300.0 300.0
C20 O21 C22 H223 60.0 60.0
H201 C20 O21 H202 119.1 120.1
C22 O21 C20 H201 288.4 60.1
C22 O21 C20 H202 169.3 300.0
H221 C22 O21 H222 240.0 240.0
H221 C22 O21 H223 120.0 120.0
H222 C22 O21 H223 240.0 240.0
H021 N02 C02 C03 180.5 360.0
H021 N02 C02 N01 0.0 179.7
C02 N02 H021 H022 120.0 179.8
H022 N02 C02 C03 300.5 179.8
H022 N02 C02 N01 120.0 359.5
C02 N02 H022 H021 240.0 180.2
H03 C03 C02 N01 179.8 180.3
C02 C03 H03 C04 180.0 180.1
H03 C03 C04 C07 359.8 0.1
H03 C03 C04 C05 180.8 180.0
H071 C07 C04 C05 269.5 270.0
C04 C07 H071 H072 120.0 120.0
C04 C07 H071 H073 240.0 240.0
H072 C07 H071 H073 120.0 120.0
H072 C07 C04 C05 29.5 30.0
C04 C07 H072 H071 240.0 240.1
C04 C07 H072 H073 120.0 120.1
H071 C07 H072 H073 240.0 240.0
H073 C07 C04 C05 149.5 150.0
C04 C07 H073 H071 120.0 120.0
C04 C07 H073 H072 240.0 239.9
H071 C07 H073 H072 120.0 120.0
C04 C05 H05 C06 180.0 180.0
H05 C05 C06 N01 179.6 179.7
H05 C05 C06 C08 0.6 360.0
C06 C08 H081 C09 241.5 240.0
C06 C08 H081 H082 120.8 120.1
H081 C08 C09 C13 56.9 59.9
C09 C08 H081 H082 239.2 240.1
H081 C08 C09 H091 177.0 180.0
H081 C08 C09 H092 296.8 300.0
C06 C08 H082 C09 118.5 120.0
C06 C08 H082 H081 239.3 239.9
H082 C08 C09 C13 296.4 300.0
C09 C08 H082 H081 120.8 119.9
H082 C08 C09 H091 56.4 60.1
H082 C08 C09 H092 176.3 180.0
C08 C09 H091 C13 239.5 240.0
H091 C09 C08 H081 177.0 180.0
H091 C09 C08 H082 56.4 60.1
C08 C09 H091 H092 119.8 120.0
H091 C09 C13 C12 95.2 330.0
H091 C09 C13 C14 274.5 149.6
C13 C09 H091 H092 240.3 240.0
C08 C09 H092 C13 120.5 120.0
H092 C09 C08 H081 296.8 300.0
H092 C09 C08 H082 176.3 180.0
C08 C09 H092 H091 240.2 240.0
H092 C09 C13 C12 335.4 210.0
H092 C09 C13 C14 154.6 29.7
C13 C09 H092 H091 119.7 120.0
H12 C12 C13 C14 180.4 180.3
C13 C12 H12 N11 180.0 180.1
H12 C12 N11 C16 180.1 180.1
C13 C14 H14 C15 180.0 179.9
H14 C14 C15 C16 179.6 180.0
H14 C14 C15 N17 0.4 359.9
H16 C16 C15 N17 0.1 0.1
C15 C16 H16 N11 180.0 180.3
C15 N17 H17 C18 231.4 179.9
H17 N17 C18 C19 126.1 359.9
H17 N17 C18 H181 247.0 120.0
H17 N17 C18 H182 5.2 239.9
N17 C18 H181 C19 234.7 240.0
H181 C18 N17 H17 247.0 120.0
N17 C18 H181 H182 117.3 119.9
H181 C18 C19 C20 112.9 60.0
C19 C18 H181 H182 242.6 240.0
H181 C18 C19 H191 233.0 180.0
H181 C18 C19 H192 352.9 300.0
N17 C18 H182 C19 125.3 120.0
H182 C18 N17 H17 5.2 239.9
N17 C18 H182 H181 242.7 240.0
H182 C18 C19 C20 354.6 300.0
C19 C18 H182 H181 117.4 120.0
H182 C18 C19 H191 114.7 60.0
H182 C18 C19 H192 234.6 180.0
C18 C19 H191 C20 239.8 240.0
H191 C19 C18 H181 233.0 180.0
H191 C19 C18 H182 114.7 60.0
C18 C19 H191 H192 119.9 120.0
H191 C19 C20 O21 105.2 60.0
C20 C19 H191 H192 240.1 240.0
H191 C19 C20 H201 225.6 179.9
H191 C19 C20 H202 344.7 300.0
C18 C19 H192 C20 120.2 120.0
H192 C19 C18 H181 352.9 300.0
H192 C19 C18 H182 234.6 180.0
C18 C19 H192 H191 240.1 240.0
H192 C19 C20 O21 345.2 300.0
C20 C19 H192 H191 119.9 120.0
H192 C19 C20 H201 105.7 60.0
H192 C19 C20 H202 224.8 180.0
C19 C20 H201 O21 237.2 240.1
H201 C20 C19 H191 225.6 179.9
H201 C20 C19 H192 105.7 60.0
C19 C20 H201 H202 118.6 120.0
H201 C20 O21 C22 288.4 60.1
O21 C20 H201 H202 241.4 239.9
C19 C20 H202 O21 122.8 120.0
H202 C20 C19 H191 344.7 300.0
H202 C20 C19 H192 224.8 180.0
C19 C20 H202 H201 241.4 240.0
H202 C20 O21 C22 169.3 300.0
O21 C20 H202 H201 118.6 120.0
O21 C22 H221 H222 120.0 120.0
O21 C22 H221 H223 240.0 240.0
H222 C22 H221 H223 120.0 120.0
O21 C22 H222 H221 240.0 240.0
O21 C22 H222 H223 120.0 120.0
H221 C22 H222 H223 240.0 240.0
O21 C22 H223 H221 120.0 120.0
O21 C22 H223 H222 240.0 240.0
H221 C22 H223 H222 120.0 120.0