PDB Chemical Component D8B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D8B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C3 |
1.512 |
1.507 |
| C3 |
C4 |
1.407 |
1.384 |
| C3 |
N1 |
1.343 |
1.317 |
| C4 |
C5 |
1.407 |
1.388 |
| N1 |
C2 |
1.349 |
1.330 |
| C5 |
C1 |
1.406 |
1.383 |
| C2 |
C1 |
1.408 |
1.397 |
| C2 |
C7 |
1.451 |
1.432 |
| C7 |
C8 |
1.218 |
1.174 |
| C8 |
C9 |
1.450 |
1.432 |
| C15 |
O1 |
1.496 |
1.429 |
| C9 |
C14 |
1.409 |
1.396 |
| C9 |
C10 |
1.412 |
1.398 |
| C14 |
C13 |
1.407 |
1.385 |
| C10 |
C11 |
1.409 |
1.379 |
| C13 |
O1 |
1.360 |
1.359 |
| C13 |
C12 |
1.411 |
1.388 |
| C11 |
C12 |
1.408 |
1.383 |
| C1 |
H1 |
1.080 |
1.080 |
| C11 |
H2 |
1.079 |
1.081 |
| C12 |
H3 |
1.080 |
1.080 |
| C14 |
H4 |
1.080 |
1.081 |
| C15 |
H5 |
1.100 |
1.090 |
| C15 |
H6 |
1.100 |
1.090 |
| C15 |
H7 |
1.100 |
1.090 |
| C4 |
H8 |
1.080 |
1.079 |
| C5 |
H9 |
1.080 |
1.080 |
| C6 |
H10 |
1.100 |
1.090 |
| C6 |
H11 |
1.100 |
1.090 |
| C6 |
H12 |
1.100 |
1.090 |
| C10 |
H13 |
1.080 |
1.080 |
Bond Angles for D8B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C4 |
C5 |
118.7 |
119.4 |
| C3 |
C4 |
H8 |
120.6 |
120.3 |
| C5 |
C4 |
H8 |
120.6 |
120.3 |
| C4 |
C5 |
H9 |
120.6 |
120.8 |
| N1 |
C2 |
C7 |
116.8 |
119.7 |
| C5 |
C1 |
H1 |
120.9 |
120.5 |
| C2 |
C1 |
H1 |
120.9 |
120.5 |
| C2 |
C7 |
C8 |
178.3 |
180.0 |
| C7 |
C8 |
C9 |
179.5 |
180.0 |
| C8 |
C9 |
C10 |
120.1 |
120.1 |
| C13 |
O1 |
C15 |
108.8 |
117.0 |
| O1 |
C15 |
H5 |
109.5 |
109.5 |
| O1 |
C15 |
H6 |
109.4 |
109.5 |
| O1 |
C15 |
H7 |
109.5 |
109.5 |
| C9 |
C14 |
H4 |
120.2 |
120.1 |
| C9 |
C10 |
H13 |
119.9 |
120.1 |
| C14 |
C13 |
O1 |
120.0 |
120.0 |
| C10 |
C11 |
H2 |
120.2 |
119.9 |
| C13 |
C12 |
H3 |
120.0 |
119.9 |
| C12 |
C11 |
H2 |
120.2 |
119.9 |
| C11 |
C12 |
H3 |
119.9 |
119.9 |
| H5 |
C15 |
H6 |
109.5 |
109.5 |
| H5 |
C15 |
H7 |
109.5 |
109.5 |
| H6 |
C15 |
H7 |
109.5 |
109.4 |
| H10 |
C6 |
H11 |
109.5 |
109.4 |
| H10 |
C6 |
H12 |
109.4 |
109.5 |
| H11 |
C6 |
H12 |
109.5 |
109.4 |
Torsion Angles for D8B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C3 |
C4 |
H8 |
0.0 |
359.7 |
| C5 |
C4 |
C3 |
H8 |
180.0 |
180.3 |
| C3 |
C4 |
C5 |
H9 |
180.1 |
180.0 |
| C3 |
N1 |
C2 |
C7 |
180.1 |
180.1 |
| C3 |
C4 |
C5 |
H8 |
180.0 |
179.7 |
| C4 |
C5 |
C1 |
H1 |
179.9 |
180.0 |
| N1 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| N1 |
C2 |
C7 |
C8 |
342.8 |
126.7 |
| C2 |
C1 |
C5 |
H1 |
180.0 |
179.7 |
| C5 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C7 |
C2 |
C1 |
H1 |
0.0 |
360.0 |
| C2 |
C7 |
C8 |
C9 |
315.4 |
180.0 |
| C7 |
C8 |
C9 |
C10 |
284.6 |
53.6 |
| C8 |
C9 |
C14 |
H4 |
359.9 |
0.1 |
| C8 |
C9 |
C10 |
H13 |
0.0 |
359.9 |
| C14 |
C13 |
O1 |
C15 |
314.9 |
180.0 |
| H5 |
C15 |
O1 |
H6 |
240.0 |
240.0 |
| H5 |
C15 |
O1 |
H7 |
120.0 |
120.0 |
| H6 |
C15 |
O1 |
H7 |
240.0 |
240.0 |
| C9 |
C14 |
C13 |
O1 |
180.1 |
180.0 |
| C10 |
C9 |
C14 |
H4 |
179.7 |
179.8 |
| C9 |
C10 |
C11 |
H2 |
179.9 |
179.7 |
| C14 |
C13 |
C12 |
H3 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H2 |
180.0 |
179.8 |
| C10 |
C11 |
C12 |
H3 |
180.0 |
180.3 |
| C13 |
O1 |
C15 |
H5 |
180.0 |
300.0 |
| C13 |
O1 |
C15 |
H6 |
300.0 |
60.0 |
| C13 |
O1 |
C15 |
H7 |
60.0 |
180.0 |
| O1 |
C13 |
C12 |
H3 |
0.1 |
360.0 |
| C13 |
C12 |
C11 |
H2 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
H3 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H2 |
180.0 |
180.2 |
| C13 |
C12 |
C11 |
H3 |
180.0 |
180.0 |
| H2 |
C11 |
C12 |
H3 |
360.0 |
0.1 |
| H3 |
C12 |
C11 |
H2 |
360.0 |
0.1 |
| H4 |
C14 |
C13 |
O1 |
0.1 |
360.0 |
| O1 |
C15 |
H5 |
H6 |
120.0 |
120.0 |
| O1 |
C15 |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
C15 |
H5 |
H7 |
120.0 |
120.0 |
| O1 |
C15 |
H6 |
H5 |
240.0 |
240.0 |
| O1 |
C15 |
H6 |
H7 |
120.0 |
120.0 |
| H5 |
C15 |
H6 |
H7 |
240.0 |
240.0 |
| O1 |
C15 |
H7 |
H5 |
120.0 |
120.0 |
| O1 |
C15 |
H7 |
H6 |
240.0 |
240.0 |
| H5 |
C15 |
H7 |
H6 |
120.0 |
120.0 |
| C3 |
C4 |
H8 |
C5 |
180.0 |
180.3 |
| H8 |
C4 |
C5 |
H9 |
0.1 |
0.3 |
| H9 |
C5 |
C4 |
H8 |
0.1 |
0.3 |
| H9 |
C5 |
C1 |
H1 |
359.9 |
360.0 |
| H11 |
C6 |
H10 |
H12 |
120.0 |
120.0 |
| H10 |
C6 |
H11 |
H12 |
240.1 |
240.0 |
| H10 |
C6 |
H12 |
H11 |
120.0 |
120.0 |
| H13 |
C10 |
C11 |
H2 |
359.9 |
360.0 |