PDB Chemical Component D86
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D86
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N9 |
C7 |
1.315 |
1.332 |
N8 |
C7 |
1.320 |
1.331 |
C7 |
N4 |
1.329 |
1.368 |
N4 |
C3 |
1.468 |
1.469 |
N4 |
C5 |
1.469 |
1.470 |
C3 |
C2 |
1.492 |
1.532 |
C5 |
C6 |
1.472 |
1.531 |
C2 |
C1 |
1.507 |
1.530 |
C6 |
C1 |
1.498 |
1.531 |
C1 |
H1 |
1.099 |
1.090 |
C1 |
H2 |
1.100 |
1.090 |
C6 |
H3 |
1.100 |
1.090 |
C6 |
H4 |
1.100 |
1.089 |
C5 |
H6 |
1.100 |
1.091 |
C5 |
H5 |
1.100 |
1.089 |
C3 |
H7 |
1.100 |
1.090 |
C3 |
H8 |
1.100 |
1.090 |
C2 |
H9 |
1.100 |
1.090 |
C2 |
H10 |
1.100 |
1.090 |
N8 |
H11 |
1.000 |
0.970 |
N8 |
H12 |
1.000 |
0.970 |
N9 |
H13 |
1.000 |
0.970 |
N9 |
H14 |
1.000 |
0.969 |
Bond Angles for D86
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N4 |
C3 |
C2 |
110.4 |
108.8 |
N4 |
C3 |
H7 |
109.2 |
109.6 |
N4 |
C3 |
H8 |
109.2 |
109.6 |
N4 |
C5 |
H6 |
108.7 |
109.5 |
N4 |
C5 |
H5 |
108.7 |
109.7 |
C2 |
C3 |
H7 |
109.2 |
109.6 |
C2 |
C3 |
H8 |
109.2 |
109.6 |
C3 |
C2 |
H9 |
109.0 |
109.5 |
C3 |
C2 |
H10 |
109.0 |
109.5 |
C5 |
C6 |
H3 |
109.1 |
109.5 |
C5 |
C6 |
H4 |
109.1 |
109.6 |
C2 |
C1 |
H1 |
109.2 |
109.5 |
C2 |
C1 |
H2 |
109.2 |
109.5 |
C6 |
C1 |
H1 |
109.2 |
109.4 |
C6 |
C1 |
H2 |
109.2 |
109.5 |
H1 |
C1 |
H2 |
109.5 |
109.4 |
H3 |
C6 |
H4 |
109.5 |
109.5 |
H6 |
C5 |
H5 |
109.5 |
109.6 |
H7 |
C3 |
H8 |
109.5 |
109.7 |
H9 |
C2 |
H10 |
109.5 |
109.5 |
H11 |
N8 |
H12 |
120.0 |
119.9 |
H13 |
N9 |
H14 |
120.0 |
120.0 |
Torsion Angles for D86
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7 |
N4 |
C3 |
H7 |
254.6 |
353.4 |
C7 |
N4 |
C3 |
H8 |
14.3 |
113.8 |
C7 |
N4 |
C5 |
H6 |
346.4 |
6.6 |
C7 |
N4 |
C5 |
H5 |
105.5 |
246.3 |
C3 |
N4 |
C5 |
H6 |
174.2 |
186.6 |
C3 |
N4 |
C5 |
H5 |
293.4 |
66.3 |
C2 |
C3 |
N4 |
H7 |
239.9 |
240.2 |
C2 |
C3 |
N4 |
H8 |
120.1 |
119.8 |
N4 |
C3 |
C2 |
H9 |
174.5 |
185.4 |
N4 |
C3 |
C2 |
H10 |
293.9 |
65.4 |
H7 |
C3 |
N4 |
H8 |
240.3 |
239.6 |
N4 |
C5 |
C6 |
H3 |
66.5 |
294.7 |
N4 |
C5 |
C6 |
H4 |
186.1 |
174.6 |
H6 |
C5 |
N4 |
H5 |
240.8 |
120.3 |
N4 |
C3 |
C2 |
H7 |
120.1 |
119.8 |
N4 |
C3 |
C2 |
H8 |
239.9 |
240.2 |
C3 |
C2 |
C1 |
H1 |
64.3 |
301.4 |
C3 |
C2 |
C1 |
H2 |
184.0 |
181.4 |
H7 |
C3 |
C2 |
H8 |
119.7 |
120.4 |
H9 |
C2 |
C3 |
H10 |
240.6 |
120.1 |
C5 |
C6 |
C1 |
H1 |
294.8 |
58.7 |
C5 |
C6 |
C1 |
H2 |
175.2 |
178.6 |
H3 |
C6 |
C5 |
H4 |
240.5 |
120.1 |
C6 |
C1 |
C2 |
H1 |
239.8 |
120.0 |
C6 |
C1 |
C2 |
H2 |
120.2 |
240.0 |
H1 |
C1 |
C2 |
H2 |
240.4 |
120.0 |
C2 |
C1 |
C6 |
H1 |
120.2 |
240.0 |
C2 |
C1 |
C6 |
H2 |
239.8 |
120.0 |
H1 |
C1 |
C6 |
H2 |
119.6 |
240.1 |
C2 |
C1 |
H1 |
H2 |
119.5 |
240.0 |
C6 |
C1 |
H1 |
H2 |
240.6 |
119.9 |
C2 |
C1 |
H2 |
H1 |
240.5 |
120.0 |
C6 |
C1 |
H2 |
H1 |
119.4 |
240.1 |
C5 |
C6 |
H3 |
H4 |
119.3 |
239.9 |
H3 |
C6 |
C1 |
H1 |
174.6 |
178.6 |
H3 |
C6 |
C1 |
H2 |
55.0 |
298.6 |
C5 |
C6 |
H4 |
H3 |
240.7 |
120.1 |
H4 |
C6 |
C1 |
H1 |
55.0 |
298.6 |
H4 |
C6 |
C1 |
H2 |
295.4 |
58.6 |
N4 |
C5 |
H6 |
H5 |
118.7 |
239.6 |
H6 |
C5 |
C6 |
H3 |
306.1 |
54.4 |
H6 |
C5 |
C6 |
H4 |
65.7 |
294.3 |
N4 |
C5 |
H5 |
H6 |
241.3 |
120.3 |
H5 |
C5 |
C6 |
H3 |
186.9 |
174.7 |
H5 |
C5 |
C6 |
H4 |
306.5 |
54.7 |
N4 |
C3 |
H7 |
C2 |
239.1 |
240.7 |
N4 |
C3 |
H7 |
H8 |
119.6 |
120.3 |
C2 |
C3 |
H7 |
H8 |
240.4 |
239.6 |
H7 |
C3 |
C2 |
H9 |
54.4 |
65.6 |
H7 |
C3 |
C2 |
H10 |
173.8 |
305.6 |
N4 |
C3 |
H8 |
C2 |
120.9 |
119.3 |
N4 |
C3 |
H8 |
H7 |
240.4 |
239.7 |
C2 |
C3 |
H8 |
H7 |
119.6 |
120.4 |
H8 |
C3 |
C2 |
H9 |
294.7 |
305.2 |
H8 |
C3 |
C2 |
H10 |
54.0 |
185.1 |
H9 |
C2 |
C3 |
H7 |
54.4 |
65.6 |
H9 |
C2 |
C3 |
H8 |
294.7 |
305.2 |
C3 |
C2 |
H9 |
H10 |
119.0 |
239.9 |
H9 |
C2 |
C1 |
H1 |
304.0 |
61.3 |
H9 |
C2 |
C1 |
H2 |
63.7 |
301.3 |
H10 |
C2 |
C3 |
H7 |
173.8 |
305.6 |
H10 |
C2 |
C3 |
H8 |
54.0 |
185.1 |
C3 |
C2 |
H10 |
H9 |
241.0 |
120.1 |
H10 |
C2 |
C1 |
H1 |
184.6 |
181.4 |
H10 |
C2 |
C1 |
H2 |
304.3 |
61.4 |