PDB Chemical Component D80
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D80
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAF |
CAD |
1.382 |
1.364 |
| CAF |
CAE |
1.392 |
1.391 |
| CAD |
CAB |
1.372 |
1.400 |
| OAM |
CAL |
1.356 |
1.342 |
| OAM |
CAJ |
1.323 |
1.344 |
| CAN |
CAO |
1.514 |
1.530 |
| CAN |
CAL |
1.489 |
1.507 |
| CAO |
CAP |
1.524 |
1.531 |
| CAE |
CAC |
1.383 |
1.364 |
| CAL |
NAK |
1.340 |
1.300 |
| CAB |
CAJ |
1.393 |
1.412 |
| CAB |
CAA |
1.386 |
1.416 |
| CAJ |
CAH |
1.469 |
1.395 |
| CAC |
CAA |
1.378 |
1.403 |
| CAA |
NAI |
1.343 |
1.342 |
| NAK |
CAH |
1.360 |
1.357 |
| CAH |
CAG |
1.480 |
1.414 |
| CAP |
CAQ |
1.514 |
1.530 |
| NAI |
CAG |
1.355 |
1.316 |
| CAG |
NAR |
1.337 |
1.384 |
| NAR |
H1 |
0.999 |
0.969 |
| NAR |
H2 |
1.000 |
0.970 |
| CAC |
H3 |
1.080 |
1.080 |
| CAE |
H4 |
1.080 |
1.080 |
| CAF |
H5 |
1.080 |
1.081 |
| CAD |
H6 |
1.080 |
1.080 |
| CAN |
H7 |
1.100 |
1.091 |
| CAN |
H8 |
1.100 |
1.090 |
| CAO |
H9 |
1.100 |
1.090 |
| CAO |
H10 |
1.101 |
1.090 |
| CAP |
H11 |
1.100 |
1.090 |
| CAP |
H12 |
1.100 |
1.090 |
| CAQ |
H13 |
1.100 |
1.090 |
| CAQ |
H14 |
1.100 |
1.091 |
| CAQ |
H15 |
1.100 |
1.090 |
Bond Angles for D80
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAF |
CAD |
CAB |
120.6 |
119.7 |
| CAD |
CAF |
H5 |
119.9 |
119.6 |
| CAF |
CAD |
H6 |
119.7 |
120.1 |
| CAF |
CAE |
H4 |
120.3 |
119.5 |
| CAD |
CAB |
CAJ |
121.3 |
121.5 |
| CAB |
CAD |
H6 |
119.7 |
120.1 |
| OAM |
CAL |
NAK |
108.9 |
110.0 |
| OAM |
CAJ |
CAH |
106.3 |
106.5 |
| CAN |
CAO |
CAP |
115.9 |
109.5 |
| CAO |
CAN |
H7 |
109.4 |
109.5 |
| CAO |
CAN |
H8 |
109.4 |
109.5 |
| CAN |
CAO |
H9 |
107.9 |
109.4 |
| CAN |
CAO |
H10 |
107.9 |
109.5 |
| CAO |
CAP |
CAQ |
114.0 |
109.5 |
| CAP |
CAO |
H9 |
107.8 |
109.4 |
| CAP |
CAO |
H10 |
107.8 |
109.5 |
| CAO |
CAP |
H11 |
108.3 |
109.4 |
| CAO |
CAP |
H12 |
108.3 |
109.5 |
| CAE |
CAC |
H3 |
120.2 |
120.0 |
| CAB |
CAJ |
CAH |
120.1 |
118.4 |
| CAQ |
CAP |
H11 |
108.3 |
109.4 |
| CAQ |
CAP |
H12 |
108.3 |
109.5 |
| CAP |
CAQ |
H13 |
109.5 |
109.5 |
| CAP |
CAQ |
H14 |
109.4 |
109.5 |
| CAP |
CAQ |
H15 |
109.5 |
109.5 |
| CAG |
NAR |
H1 |
109.5 |
120.0 |
| CAG |
NAR |
H2 |
109.5 |
120.0 |
| H1 |
NAR |
H2 |
109.5 |
120.0 |
| H7 |
CAN |
H8 |
109.5 |
109.5 |
| H9 |
CAO |
H10 |
109.5 |
109.5 |
| H11 |
CAP |
H12 |
109.5 |
109.5 |
| H13 |
CAQ |
H14 |
109.5 |
109.5 |
| H13 |
CAQ |
H15 |
109.5 |
109.4 |
| H14 |
CAQ |
H15 |
109.5 |
109.5 |
Torsion Angles for D80
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAD |
CAF |
CAE |
H4 |
178.8 |
180.0 |
| CAF |
CAD |
CAB |
CAJ |
179.6 |
180.0 |
| CAB |
CAD |
CAF |
H6 |
180.0 |
180.0 |
| CAF |
CAE |
CAC |
H3 |
180.6 |
180.0 |
| CAB |
CAD |
CAF |
H5 |
181.9 |
180.0 |
| CAF |
CAD |
CAB |
H6 |
180.0 |
180.0 |
| CAD |
CAB |
CAJ |
CAH |
179.3 |
179.8 |
| CAL |
OAM |
CAJ |
CAH |
3.9 |
0.3 |
| CAB |
CAJ |
OAM |
CAH |
178.7 |
179.7 |
| CAN |
CAO |
CAP |
CAQ |
189.8 |
180.0 |
| CAP |
CAO |
CAN |
H9 |
239.1 |
240.1 |
| CAP |
CAO |
CAN |
H10 |
120.9 |
120.0 |
| CAN |
CAO |
CAP |
H11 |
310.4 |
299.9 |
| CAN |
CAO |
CAP |
H12 |
69.1 |
59.9 |
| H7 |
CAN |
CAO |
H8 |
240.1 |
120.0 |
| H9 |
CAO |
CAN |
H10 |
241.8 |
240.0 |
| CAP |
CAO |
CAN |
H7 |
81.8 |
60.0 |
| CAP |
CAO |
CAN |
H8 |
201.7 |
300.0 |
| CAN |
CAO |
CAP |
H9 |
120.9 |
119.9 |
| CAN |
CAO |
CAP |
H10 |
239.1 |
239.9 |
| CAQ |
CAP |
CAO |
H11 |
239.3 |
240.1 |
| CAQ |
CAP |
CAO |
H12 |
120.6 |
120.1 |
| CAO |
CAP |
CAQ |
H13 |
180.0 |
180.0 |
| CAO |
CAP |
CAQ |
H14 |
300.0 |
300.0 |
| CAO |
CAP |
CAQ |
H15 |
60.0 |
60.0 |
| H9 |
CAO |
CAP |
H10 |
118.1 |
120.0 |
| H11 |
CAP |
CAO |
H12 |
241.3 |
240.0 |
| CAJ |
CAB |
CAD |
H6 |
359.6 |
359.9 |
| OAM |
CAJ |
CAB |
CAH |
181.4 |
180.3 |
| OAM |
CAL |
NAK |
CAH |
5.0 |
0.0 |
| CAH |
CAG |
NAR |
H1 |
179.2 |
179.7 |
| CAH |
CAG |
NAR |
H2 |
299.2 |
359.5 |
| CAQ |
CAP |
CAO |
H9 |
68.8 |
60.1 |
| CAQ |
CAP |
CAO |
H10 |
310.7 |
300.1 |
| CAO |
CAP |
CAQ |
H11 |
120.7 |
119.9 |
| CAO |
CAP |
CAQ |
H12 |
239.3 |
240.0 |
| H11 |
CAP |
CAQ |
H12 |
118.7 |
120.0 |
| H13 |
CAQ |
CAP |
H14 |
240.0 |
240.0 |
| H13 |
CAQ |
CAP |
H15 |
120.0 |
120.0 |
| H14 |
CAQ |
CAP |
H15 |
240.0 |
240.0 |
| NAI |
CAG |
NAR |
H1 |
360.0 |
359.9 |
| NAI |
CAG |
NAR |
H2 |
120.0 |
179.8 |
| H1 |
NAR |
CAG |
H2 |
240.0 |
180.2 |
| CAG |
NAR |
H1 |
H2 |
120.0 |
179.8 |
| CAG |
NAR |
H2 |
H1 |
240.0 |
180.2 |
| H4 |
CAE |
CAC |
H3 |
0.6 |
0.0 |
| H5 |
CAF |
CAD |
CAB |
181.9 |
180.0 |
| H5 |
CAF |
CAD |
H6 |
1.9 |
0.0 |
| H5 |
CAF |
CAE |
H4 |
358.8 |
360.0 |
| CAF |
CAD |
H6 |
CAB |
180.0 |
180.0 |
| H6 |
CAD |
CAF |
H5 |
1.9 |
0.0 |
| H6 |
CAD |
CAB |
CAJ |
359.6 |
359.9 |
| H7 |
CAN |
CAO |
CAP |
81.8 |
60.0 |
| CAO |
CAN |
H7 |
H8 |
119.8 |
240.0 |
| H7 |
CAN |
CAO |
H9 |
202.8 |
180.0 |
| H7 |
CAN |
CAO |
H10 |
320.9 |
300.0 |
| H8 |
CAN |
CAO |
CAP |
201.7 |
300.0 |
| CAO |
CAN |
H8 |
H7 |
240.2 |
120.0 |
| H8 |
CAN |
CAO |
H9 |
322.6 |
60.0 |
| H8 |
CAN |
CAO |
H10 |
80.8 |
180.0 |
| CAN |
CAO |
H9 |
CAP |
234.2 |
240.0 |
| H9 |
CAO |
CAN |
H7 |
202.8 |
180.0 |
| H9 |
CAO |
CAN |
H8 |
322.6 |
60.0 |
| CAN |
CAO |
H9 |
H10 |
117.1 |
120.0 |
| H9 |
CAO |
CAP |
CAQ |
68.8 |
60.1 |
| CAP |
CAO |
H9 |
H10 |
242.9 |
240.0 |
| H9 |
CAO |
CAP |
H11 |
189.5 |
180.0 |
| H9 |
CAO |
CAP |
H12 |
308.2 |
300.0 |
| CAN |
CAO |
H10 |
CAP |
125.8 |
120.0 |
| H10 |
CAO |
CAN |
H7 |
320.9 |
300.0 |
| H10 |
CAO |
CAN |
H8 |
80.8 |
180.0 |
| CAN |
CAO |
H10 |
H9 |
242.9 |
240.0 |
| H10 |
CAO |
CAP |
CAQ |
310.7 |
300.1 |
| CAP |
CAO |
H10 |
H9 |
117.1 |
120.0 |
| H10 |
CAO |
CAP |
H11 |
71.4 |
60.0 |
| H10 |
CAO |
CAP |
H12 |
190.0 |
180.0 |
| CAO |
CAP |
H11 |
CAQ |
235.8 |
240.0 |
| H11 |
CAP |
CAO |
H9 |
189.5 |
180.0 |
| H11 |
CAP |
CAO |
H10 |
71.4 |
60.0 |
| CAO |
CAP |
H11 |
H12 |
117.9 |
120.0 |
| CAQ |
CAP |
H11 |
H12 |
242.1 |
240.0 |
| H11 |
CAP |
CAQ |
H13 |
59.3 |
60.0 |
| H11 |
CAP |
CAQ |
H14 |
179.3 |
180.0 |
| H11 |
CAP |
CAQ |
H15 |
299.3 |
300.0 |
| CAO |
CAP |
H12 |
CAQ |
124.1 |
120.0 |
| H12 |
CAP |
CAO |
H9 |
308.2 |
300.0 |
| H12 |
CAP |
CAO |
H10 |
190.0 |
180.0 |
| CAO |
CAP |
H12 |
H11 |
242.1 |
240.0 |
| CAQ |
CAP |
H12 |
H11 |
117.9 |
120.0 |
| H12 |
CAP |
CAQ |
H13 |
300.7 |
300.0 |
| H12 |
CAP |
CAQ |
H14 |
60.6 |
60.0 |
| H12 |
CAP |
CAQ |
H15 |
180.7 |
180.0 |
| H13 |
CAQ |
CAP |
H11 |
59.3 |
60.0 |
| H13 |
CAQ |
CAP |
H12 |
300.7 |
300.0 |
| CAP |
CAQ |
H13 |
H14 |
120.0 |
120.0 |
| CAP |
CAQ |
H13 |
H15 |
240.0 |
240.0 |
| H14 |
CAQ |
H13 |
H15 |
120.0 |
119.9 |
| H14 |
CAQ |
CAP |
H11 |
179.3 |
180.0 |
| H14 |
CAQ |
CAP |
H12 |
60.6 |
60.0 |
| CAP |
CAQ |
H14 |
H13 |
240.0 |
240.0 |
| CAP |
CAQ |
H14 |
H15 |
120.0 |
120.0 |
| H13 |
CAQ |
H14 |
H15 |
240.0 |
240.1 |
| H15 |
CAQ |
CAP |
H11 |
299.3 |
300.0 |
| H15 |
CAQ |
CAP |
H12 |
180.7 |
180.0 |
| CAP |
CAQ |
H15 |
H13 |
120.0 |
120.0 |
| CAP |
CAQ |
H15 |
H14 |
240.0 |
240.0 |
| H13 |
CAQ |
H15 |
H14 |
120.0 |
119.9 |