PDB Chemical Component D7V

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D7V

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.472	1.469
N1	C2	1.472	1.468
N1	C3	1.473	1.469
O1	C13	1.426	1.405
O1	C14	1.377	1.347
C3	C4	1.526	1.530
C4	C5	1.511	1.507
C5	C6	1.348	1.338
C6	C7	1.496	1.482
C6	C15	1.509	1.482
C7	C8	1.396	1.403
C7	C12	1.382	1.383
C8	C9	1.396	1.376
C9	C10	1.396	1.383
C10	C11	1.397	1.377
C11	C12	1.395	1.395
C12	C13	1.509	1.506
C14	C15	1.406	1.387
C14	C16	1.398	1.389
C15	C19	1.397	1.388
C16	C17	1.393	1.382
C17	C18	1.392	1.384
C18	C19	1.394	1.383
C1	H1	1.100	1.090
C1	H1A	1.100	1.090
C1	H1B	1.101	1.090
C2	H2	1.100	1.089
C2	H2A	1.100	1.091
C2	H2B	1.100	1.090
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C4	H4	1.100	1.090
C4	H4A	1.100	1.090
C5	H5	1.080	1.080
C8	H8	1.080	1.080
C9	H9	1.080	1.079
C10	H10	1.080	1.081
C11	H11	1.080	1.080
C13	H13	1.100	1.090
C13	H13A	1.100	1.090
C16	H16	1.080	1.080
C17	H17	1.080	1.080
C18	H18	1.080	1.079
C19	H19	1.080	1.080

Bond Angles for D7V

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	N1	C2	109.2	111.0
C1	N1	C3	109.6	111.0
N1	C1	H1	109.5	109.5
N1	C1	H1A	109.4	109.5
N1	C1	H1B	109.5	109.4
C2	N1	C3	110.0	111.0
N1	C2	H2	109.5	109.5
N1	C2	H2A	109.5	109.5
N1	C2	H2B	109.5	109.5
N1	C3	C4	110.6	109.5
N1	C3	H3	109.1	109.5
N1	C3	H3A	109.1	109.4
C13	O1	C14	125.3	120.7
O1	C13	C12	108.6	114.8
O1	C13	H13	109.8	108.4
O1	C13	H13A	109.7	108.4
O1	C14	C15	124.8	119.9
O1	C14	C16	115.6	120.8
C3	C4	C5	108.6	109.5
C4	C3	H3	109.1	109.5
C4	C3	H3A	109.1	109.5
C3	C4	H4	109.8	109.5
C3	C4	H4A	109.8	109.4
C4	C5	C6	125.4	120.0
C5	C4	H4	109.7	109.5
C5	C4	H4A	109.7	109.5
C4	C5	H5	117.3	120.0
C5	C6	C7	118.0	119.6
C5	C6	C15	124.8	119.6
C6	C5	H5	117.3	120.0
C7	C6	C15	117.3	120.9
C6	C7	C8	121.1	116.3
C6	C7	C12	118.4	123.8
C6	C15	C14	122.1	116.9
C6	C15	C19	118.7	122.0
C8	C7	C12	120.6	119.9
C7	C8	C9	119.5	120.8
C7	C8	H8	120.3	119.6
C7	C12	C11	120.3	118.6
C7	C12	C13	118.3	126.4
C8	C9	C10	119.9	119.4
C9	C8	H8	120.2	119.6
C8	C9	H9	120.1	120.3
C9	C10	C11	120.2	120.1
C10	C9	H9	120.0	120.3
C9	C10	H10	119.9	120.0
C10	C11	C12	119.5	121.3
C11	C10	H10	119.9	120.0
C10	C11	H11	120.2	119.4
C11	C12	C13	121.4	115.0
C12	C11	H11	120.3	119.3
C12	C13	H13	109.8	108.5
C12	C13	H13A	109.8	108.4
C15	C14	C16	119.6	119.3
C14	C15	C19	119.0	121.1
C14	C16	C17	120.9	119.7
C14	C16	H16	119.5	120.2
C15	C19	C18	120.9	119.1
C15	C19	H19	119.6	120.4
C16	C17	C18	119.4	120.8
C17	C16	H16	119.5	120.1
C16	C17	H17	120.3	119.6
C17	C18	C19	120.1	120.1
C18	C17	H17	120.3	119.6
C17	C18	H18	119.9	120.0
C19	C18	H18	120.0	119.9
C18	C19	H19	119.6	120.5
H1	C1	H1A	109.4	109.5
H1	C1	H1B	109.4	109.5
H1A	C1	H1B	109.5	109.5
H2	C2	H2A	109.4	109.5
H2	C2	H2B	109.5	109.5
H2A	C2	H2B	109.5	109.5
H3	C3	H3A	109.9	109.4
H4	C4	H4A	109.2	109.4
H13	C13	H13A	109.2	108.2

Torsion Angles for D7V

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C1	C3	239.4	236.0
C1	N1	C2	H2	180.0	64.0
C1	N1	C2	H2A	300.0	184.0
C1	N1	C2	H2B	60.0	303.9
C1	N1	C3	C4	116.3	66.0
C1	N1	C3	H3	236.3	186.1
C1	N1	C3	H3A	356.4	306.0
H1	C1	N1	H1A	240.0	240.0
H1	C1	N1	H1B	120.0	120.0
H1A	C1	N1	H1B	240.0	240.0
C1	N1	C2	C3	120.3	124.0
C2	N1	C1	H1	180.0	60.0
C2	N1	C1	H1A	300.0	180.0
C2	N1	C1	H1B	60.0	300.0
C2	N1	C3	C4	236.4	190.0
C2	N1	C3	H3	356.4	310.0
C2	N1	C3	H3A	116.5	70.0
H2	C2	N1	H2A	240.0	240.0
H2	C2	N1	H2B	120.0	120.0
H2A	C2	N1	H2B	240.0	240.0
C1	N1	C3	C2	239.9	236.0
C3	N1	C1	H1	300.6	184.0
C3	N1	C1	H1A	60.6	304.0
C3	N1	C1	H1B	180.6	64.0
C3	N1	C2	H2	59.7	300.0
C3	N1	C2	H2A	179.7	60.0
C3	N1	C2	H2B	299.7	180.0
N1	C3	C4	C5	120.7	180.0
C4	C3	N1	H3	240.0	239.9
C4	C3	N1	H3A	120.0	120.0
N1	C3	C4	H4	240.7	300.1
N1	C3	C4	H4A	0.7	60.0
H3	C3	N1	H3A	240.0	240.1
C13	O1	C14	C15	347.6	73.0
C13	O1	C14	C16	167.6	253.5
C7	C12	C13	O1	288.9	11.9
C11	C12	C13	O1	107.9	191.6
C12	C13	O1	H13	240.0	238.5
C12	C13	O1	H13A	120.0	121.3
H13	C13	O1	H13A	240.0	242.8
C14	O1	C13	C12	69.3	290.0
C14	O1	C13	H13	189.3	51.5
C14	O1	C13	H13A	309.3	168.7
C6	C15	C14	O1	357.5	2.3
C15	C14	O1	C16	179.9	179.5
O1	C14	C15	C19	182.3	182.0
O1	C14	C16	C17	179.3	178.6
O1	C14	C16	H16	359.3	358.5
N1	C3	C4	H3	120.0	120.1
N1	C3	C4	H3A	240.0	240.0
C3	C4	C5	C6	99.1	125.0
C5	C4	C3	H4	240.0	240.0
C5	C4	C3	H4A	120.0	120.0
C3	C4	C5	H5	279.1	305.1
H3	C3	C4	H3A	120.0	119.9
H4	C4	C3	H4A	240.0	240.1
C5	C4	C3	H3	0.7	60.0
C5	C4	C3	H3A	240.7	300.0
C3	C4	C5	H4	120.0	120.0
C3	C4	C5	H4A	240.0	240.0
C4	C5	C6	C7	180.6	180.0
C4	C5	C6	C15	0.8	360.0
C6	C5	C4	H5	180.0	179.9
H4	C4	C5	H4A	120.0	120.0
C6	C5	C4	H4	339.1	4.9
C6	C5	C4	H4A	219.1	245.0
C4	C5	C6	H5	180.0	180.1
C7	C6	C5	C15	179.8	180.1
C5	C6	C7	C8	64.9	42.7
C5	C6	C7	C12	244.2	222.7
C5	C6	C15	C14	134.2	120.8
C5	C6	C15	C19	309.4	301.1
C5	C6	C7	C15	180.2	179.9
C7	C6	C5	H5	0.6	360.0
C7	C6	C15	C14	314.4	300.7
C7	C6	C15	C19	129.5	121.1
C8	C7	C6	C12	180.7	180.0
C6	C7	C8	C9	179.1	180.2
C6	C7	C8	H8	359.1	0.2
C6	C7	C12	C11	180.9	179.7
C6	C7	C12	C13	360.0	359.4
O1	C14	C15	C6	357.5	2.3
C5	C6	C15	C7	179.8	180.1
C15	C6	C5	H5	180.7	179.9
C15	C6	C7	C8	244.7	222.8
C15	C6	C7	C12	64.0	42.8
C6	C15	C14	C16	177.4	181.8
C14	C15	C6	C19	184.8	179.7
C6	C15	C19	C18	181.7	178.7
C6	C15	C19	H19	1.7	358.7
C8	C7	C6	C15	244.7	222.8
C6	C7	C8	C12	179.3	180.0
C8	C7	C12	C11	0.3	359.7
C8	C7	C12	C13	179.3	179.4
C7	C8	C9	C10	359.9	360.0
C9	C8	C7	H8	180.0	180.0
C7	C8	C9	H9	179.8	180.0
O1	C13	C12	C7	288.9	11.9
C12	C7	C6	C15	64.0	42.8
C6	C7	C12	C8	180.7	180.0
C12	C7	C8	C9	359.8	0.2
C12	C7	C8	H8	179.8	180.2
C10	C11	C12	C7	360.0	0.2
C11	C12	C7	C13	181.0	180.3
C7	C12	C11	H11	180.0	180.2
C7	C12	C13	H13	168.9	250.5
C7	C12	C13	H13A	48.9	133.3
C9	C8	C7	C12	359.8	0.2
C7	C8	C9	H8	180.0	180.0
C8	C9	C10	C11	0.4	359.9
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	H10	180.4	179.9
C10	C9	C8	H8	179.9	180.0
C8	C9	C10	H9	180.0	180.0
C9	C10	C11	C12	359.7	359.9
C11	C10	C9	H10	180.0	180.1
C9	C10	C11	H11	179.7	180.0
C7	C12	C11	C10	360.0	0.2
C11	C10	C9	H9	180.4	180.0
C9	C10	C11	H10	180.0	179.9
C10	C11	C12	C13	181.0	180.5
C12	C11	C10	H11	180.0	180.0
O1	C13	C12	C11	107.9	191.6
C7	C12	C11	C13	179.0	179.7
C12	C11	C10	H10	179.7	180.0
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	H13	347.9	70.2
C11	C12	C13	H13A	227.9	312.9
C12	C13	O1	C14	69.3	290.0
O1	C13	C12	H13	120.0	121.5
O1	C13	C12	H13A	240.0	238.7
C7	C12	C13	C11	181.0	180.3
C13	C12	C11	H11	1.0	0.5
H13	C13	C12	H13A	120.0	117.2
O1	C14	C15	C16	180.1	180.5
C6	C15	C14	C19	175.2	180.3
C15	C14	C16	C17	359.3	359.0
C15	C14	C16	H16	179.3	178.9
C14	C15	C19	C18	357.1	359.0
C14	C15	C19	H19	177.0	179.0
O1	C14	C16	C15	179.9	179.5
C16	C14	C15	C19	2.2	1.5
C14	C16	C17	C18	359.8	359.9
C17	C16	C14	H16	180.0	180.1
C14	C16	C17	H17	179.8	179.9
C6	C15	C19	C14	184.7	179.7
C19	C15	C14	C16	2.2	1.5
C17	C18	C19	C15	2.1	359.9
C15	C19	C18	H18	182.2	180.0
C18	C19	C15	H19	180.0	180.0
C14	C16	C17	H16	180.0	179.9
C16	C17	C18	C19	359.5	0.6
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	H18	179.4	180.6
C15	C19	C18	C17	2.1	359.9
C18	C17	C16	H16	179.8	180.0
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	H18	180.0	180.1
C17	C18	C19	H19	182.1	179.9
C15	C19	C18	H19	180.0	180.0
C19	C18	C17	H17	179.5	180.6
C17	C18	C19	H18	180.0	179.9
H1	C1	N1	C2	180.0	60.0
H1	C1	N1	C3	300.6	184.0
N1	C1	H1	H1A	120.0	120.0
N1	C1	H1	H1B	240.0	240.0
H1A	C1	H1	H1B	120.0	120.0
H1A	C1	N1	C2	300.0	180.0
H1A	C1	N1	C3	60.6	304.0
N1	C1	H1A	H1	240.0	240.0
N1	C1	H1A	H1B	120.0	120.0
H1	C1	H1A	H1B	240.1	240.0
H1B	C1	N1	C2	60.0	300.0
H1B	C1	N1	C3	180.6	64.0
N1	C1	H1B	H1	120.1	120.0
N1	C1	H1B	H1A	240.0	240.0
H1	C1	H1B	H1A	120.0	120.0
H2	C2	N1	C3	59.7	300.0
N1	C2	H2	H2A	120.0	120.0
N1	C2	H2	H2B	240.0	240.0
H2A	C2	H2	H2B	120.0	120.0
H2A	C2	N1	C3	179.7	60.0
N1	C2	H2A	H2	240.0	240.0
N1	C2	H2A	H2B	120.0	120.0
H2	C2	H2A	H2B	240.0	240.0
H2B	C2	N1	C3	299.7	180.0
N1	C2	H2B	H2	120.0	120.1
N1	C2	H2B	H2A	240.0	240.0
H2	C2	H2B	H2A	120.0	120.0
N1	C3	H3	C4	239.1	239.9
N1	C3	H3	H3A	119.5	120.0
H3	C3	C4	C5	0.7	60.0
C4	C3	H3	H3A	240.4	240.0
H3	C3	C4	H4	120.7	180.0
H3	C3	C4	H4A	240.7	299.9
N1	C3	H3A	C4	120.9	120.1
N1	C3	H3A	H3	240.5	240.0
H3A	C3	C4	C5	240.7	300.0
C4	C3	H3A	H3	119.6	120.0
H3A	C3	C4	H4	0.6	60.1
H3A	C3	C4	H4A	120.7	180.0
C3	C4	H4	C5	240.7	239.9
H4	C4	C3	H3	120.7	180.0
H4	C4	C3	H3A	0.6	60.1
C3	C4	H4	H4A	120.4	119.9
H4	C4	C5	C6	339.1	4.9
C5	C4	H4	H4A	239.7	240.0
H4	C4	C5	H5	159.2	185.0
C3	C4	H4A	C5	119.3	120.1
H4A	C4	C3	H3	240.7	299.9
H4A	C4	C3	H3A	120.7	180.0
C3	C4	H4A	H4	239.6	240.1
H4A	C4	C5	C6	219.1	245.0
C5	C4	H4A	H4	120.3	120.0
H4A	C4	C5	H5	39.2	65.1
C4	C5	H5	C6	180.0	179.9
H5	C5	C4	H4	159.2	185.0
H5	C5	C4	H4A	39.2	65.1
H5	C5	C6	C7	0.6	360.0
H5	C5	C6	C15	180.7	179.9
H8	C8	C7	C12	179.8	180.2
C7	C8	H8	C9	180.0	180.0
H8	C8	C9	C10	179.9	180.0
H8	C8	C9	H9	359.8	0.0
C8	C9	H9	C10	180.0	180.0
H9	C9	C8	H8	359.8	0.0
H9	C9	C10	C11	180.4	180.0
H9	C9	C10	H10	0.4	359.9
C9	C10	H10	C11	180.0	180.1
H10	C10	C9	H9	0.4	359.9
H10	C10	C11	C12	179.7	180.0
H10	C10	C11	H11	359.7	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	359.7	0.0
H11	C11	C12	C13	1.0	0.5
H13	C13	O1	C14	189.3	51.5
O1	C13	H13	C12	240.7	234.7
O1	C13	H13	H13A	120.3	117.3
C12	C13	H13	H13A	239.6	242.6
H13A	C13	O1	C14	309.3	168.7
O1	C13	H13A	C12	119.3	125.2
O1	C13	H13A	H13	239.7	242.6
C12	C13	H13A	H13	120.4	117.4
C14	C16	H16	C17	180.0	180.1
H16	C16	C17	C18	179.8	180.0
H16	C16	C17	H17	359.8	0.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C16	H16	359.8	0.0
H17	C17	C18	C19	179.5	180.6
H17	C17	C18	H18	359.4	0.5
C17	C18	H18	C19	180.0	180.1
H18	C18	C17	H17	359.4	0.5
H18	C18	C19	H19	2.2	360.0
C15	C19	H19	C18	180.0	180.0
H19	C19	C18	H18	2.2	360.0