PDB Chemical Component D7S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D7S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C3 1.214 1.207
C3 C2 1.502 1.512
C3 C4 1.521 1.510
C2 C1 1.525 1.531
C4 C5 1.530 1.536
C1 C10 1.560 1.533
C5 C10 1.531 1.527
C5 C6 1.532 1.535
C10 C19 1.525 1.530
C10 C9 1.547 1.520
C6 C7 1.505 1.500
C9 C8 1.559 1.505
C9 C11 1.547 1.532
C7 C8 1.353 1.296
C8 C14 1.523 1.504
C11 C12 1.535 1.539
C14 C15 1.523 1.531
C14 C13 1.522 1.555
C12 C13 1.527 1.510
C15 C16 1.522 1.555
C13 C18 1.539 1.530
C13 C17 1.546 1.521
C17 C16 1.545 1.551
C17 C20 1.537 1.530
C21 C20 1.538 1.530
C20 C22 1.539 1.530
C22 C23 1.540 1.531
C23 C24 1.525 1.530
C24 C25 1.519 1.530
O2 C27 1.288 1.208
C25 C27 1.523 1.507
C25 C26 1.531 1.530
C27 O3 1.258 1.342
O3 H1 0.950 0.966
C25 H2 1.100 1.090
C26 H3 1.100 1.090
C26 H4 1.100 1.090
C26 H5 1.100 1.090
C24 H6 1.100 1.090
C24 H7 1.100 1.090
C23 H8 1.100 1.089
C23 H9 1.100 1.090
C22 H10 1.100 1.090
C22 H11 1.100 1.090
C20 H12 1.100 1.090
C21 H13 1.100 1.090
C21 H14 1.100 1.089
C21 H15 1.100 1.090
C17 H16 1.100 1.090
C16 H17 1.100 1.089
C16 H18 1.100 1.090
C15 H19 1.100 1.090
C15 H20 1.100 1.089
C14 H21 1.100 1.089
C7 H22 1.080 1.080
C6 H23 1.100 1.090
C6 H24 1.100 1.091
C18 H25 1.100 1.090
C18 H26 1.100 1.090
C18 H27 1.100 1.090
C12 H28 1.100 1.090
C12 H29 1.100 1.090
C11 H30 1.100 1.090
C11 H31 1.100 1.089
C9 H32 1.100 1.090
C1 H33 1.100 1.090
C1 H34 1.100 1.090
C19 H35 1.100 1.090
C19 H36 1.100 1.090
C19 H37 1.100 1.090
C5 H38 1.100 1.090
C4 H39 1.100 1.090
C4 H40 1.100 1.090
C2 H41 1.100 1.090
C2 H42 1.100 1.090

Bond Angles for D7S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C3 C2 123.3 121.0
C3 C2 H41 109.3 109.8
C3 C2 H42 109.3 109.8
C3 C4 H39 109.0 109.5
C3 C4 H40 109.0 109.6
C2 C1 H33 108.4 109.4
C2 C1 H34 108.3 109.3
C4 C5 H38 105.4 110.4
C1 C10 C19 111.5 109.2
C5 C6 H23 108.2 109.5
C5 C6 H24 108.2 109.4
C10 C19 H35 109.5 109.4
C10 C19 H36 109.5 109.5
C10 C19 H37 109.4 109.4
C10 C9 H32 104.9 106.7
C6 C7 H22 119.3 118.5
C9 C11 H30 107.6 108.0
C9 C11 H31 107.6 109.6
C8 C14 C13 114.0 105.2
C8 C14 H21 106.0 111.4
C11 C12 H28 108.9 109.9
C11 C12 H29 108.8 109.9
C14 C15 H19 111.1 110.8
C14 C15 H20 111.1 110.9
C14 C13 C18 112.0 109.1
C13 C14 H21 106.1 111.2
C15 C16 H17 109.4 110.1
C15 C16 H18 109.4 110.1
C13 C18 H25 109.5 109.4
C13 C18 H26 109.4 109.4
C13 C18 H27 109.5 109.5
C13 C17 H16 106.9 110.4
C16 C17 H16 106.9 110.4
C17 C16 H17 109.4 110.1
C17 C16 H18 109.4 110.1
C17 C20 H12 107.2 109.5
C21 C20 H12 107.2 109.5
C20 C22 H10 108.3 109.5
C20 C22 H11 108.3 109.5
C22 C23 H8 108.9 109.5
C22 C23 H9 108.9 109.5
C23 C24 H6 109.0 109.5
C23 C24 H7 109.0 109.5
C24 C25 H2 108.7 109.4
C26 C25 H2 108.5 109.5
C25 C26 H3 109.5 109.5
C25 C26 H4 109.5 109.5
C25 C26 H5 109.5 109.4
C27 O3 H1 109.5 117.0
H3 C26 H4 109.5 109.4
H3 C26 H5 109.4 109.5
H4 C26 H5 109.5 109.5
H6 C24 H7 109.5 109.5
H8 C23 H9 109.5 109.5
H10 C22 H11 109.5 109.5
H13 C21 H14 109.5 109.5
H13 C21 H15 109.4 109.5
H14 C21 H15 109.5 109.5
H17 C16 H18 109.5 110.1
H19 C15 H20 109.5 110.7
H23 C6 H24 109.4 109.4
H25 C18 H26 109.4 109.4
H25 C18 H27 109.5 109.5
H26 C18 H27 109.5 109.6
H28 C12 H29 109.5 109.8
H30 C11 H31 109.5 109.1
H33 C1 H34 109.5 109.4
H35 C19 H36 109.4 109.5
H35 C19 H37 109.5 109.5
H36 C19 H37 109.5 109.5
H39 C4 H40 109.5 109.5
H41 C2 H42 109.5 109.8

Torsion Angles for D7S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C3 C2 H41 348.1 111.9
O1 C3 C2 H42 108.0 351.2
O1 C3 C4 H39 254.9 8.8
O1 C3 C4 H40 14.3 248.6
C2 C3 C4 H39 72.6 187.7
C2 C3 C4 H40 192.0 67.6
C3 C2 C1 H33 65.2 183.6
C3 C2 C1 H34 183.9 63.9
H41 C2 C3 H42 240.1 120.8
C3 C4 C5 H38 294.2 291.8
H39 C4 C3 H40 240.6 120.2
H33 C1 C2 H34 241.3 119.7
C4 C5 C6 H23 299.6 65.7
C4 C5 C6 H24 58.1 305.8
C1 C10 C19 H35 180.0 301.4
C1 C10 C19 H36 300.0 61.5
C1 C10 C19 H37 60.0 181.5
C1 C10 C9 H32 319.6 321.1
C10 C5 C6 H23 71.0 185.0
C10 C5 C6 H24 189.5 65.1
C5 C10 C19 H35 62.4 181.4
C5 C10 C19 H36 182.4 301.4
C5 C10 C19 H37 302.4 61.4
C5 C10 C9 H32 76.5 82.3
C5 C6 C7 H22 199.8 206.5
H23 C6 C5 H24 241.5 119.9
C19 C10 C9 H32 196.2 202.1
H35 C19 C10 H36 240.0 240.0
H35 C19 C10 H37 120.0 120.0
H36 C19 C10 H37 240.0 240.0
C10 C9 C11 H30 296.5 53.9
C10 C9 C11 H31 54.4 295.1
C9 C8 C14 H21 299.4 297.1
C9 C11 C12 H28 67.3 183.4
C9 C11 C12 H29 186.6 62.5
H30 C11 C9 H31 242.1 118.7
C7 C8 C14 C13 230.2 237.3
C7 C8 C14 H21 113.9 116.7
C8 C14 C15 H19 317.5 86.1
C8 C14 C15 H20 79.6 322.7
C8 C14 C13 C18 56.6 51.1
C13 C14 C8 H21 116.3 120.6
H28 C12 C11 H29 240.8 120.9
C14 C15 C16 H17 129.6 265.0
C14 C15 C16 H18 249.6 143.4
H19 C15 C14 H20 237.9 123.4
C8 C14 C13 H21 243.7 239.3
C13 C14 C15 H19 86.3 199.4
C13 C14 C15 H20 208.4 76.0
C14 C13 C18 H25 180.0 58.6
C14 C13 C18 H26 300.0 178.5
C14 C13 C18 H27 60.0 298.6
C14 C13 C17 H16 75.9 88.6
C12 C13 C14 H21 54.9 53.3
C12 C13 C18 H25 296.6 176.1
C12 C13 C18 H26 56.6 296.0
C12 C13 C18 H27 176.6 56.1
C12 C13 C17 H16 320.4 330.0
C15 C16 C17 H16 264.5 245.0
C17 C16 C15 H17 240.0 119.2
C17 C16 C15 H18 120.0 240.8
H17 C16 C15 H18 240.0 121.6
C18 C13 C14 H21 172.9 171.8
C18 C13 C17 H16 195.7 204.6
H25 C18 C13 H26 240.0 240.1
H25 C18 C13 H27 120.0 120.0
H26 C18 C13 H27 240.0 239.9
C16 C17 C13 H16 248.1 241.1
C13 C17 C16 H17 256.4 123.2
C13 C17 C16 H18 136.5 244.8
C13 C17 C20 H12 62.0 57.1
C15 C16 C17 H17 120.0 240.7
C15 C16 C17 H18 240.0 119.2
C13 C17 C16 H16 111.9 119.0
C16 C17 C20 H12 301.7 301.5
H17 C16 C17 H18 120.0 238.5
C21 C20 C17 H12 242.3 240.0
C17 C20 C22 H10 305.0 65.0
C17 C20 C22 H11 63.6 305.0
C17 C20 C21 H12 117.8 120.0
C21 C20 C22 H10 178.7 305.0
C21 C20 C22 H11 297.3 185.0
C20 C22 C23 H8 188.2 60.0
C20 C22 C23 H9 307.6 300.0
H10 C22 C20 H11 241.4 120.0
C22 C23 C24 H6 295.6 60.0
C22 C23 C24 H7 55.0 300.0
H8 C23 C22 H9 240.7 120.0
C23 C24 C25 H2 300.7 55.0
H6 C24 C23 H7 240.5 120.0
C26 C25 C24 H2 242.1 240.0
C24 C25 C26 H3 180.0 60.0
C24 C25 C26 H4 300.0 179.9
C24 C25 C26 H5 60.0 300.0
O2 C27 O3 H1 360.0 360.0
C25 C27 O3 H1 179.1 180.1
C24 C25 C26 H2 118.0 119.9
H3 C26 C25 H4 240.0 240.1
H3 C26 C25 H5 120.0 120.0
H4 C26 C25 H5 240.0 239.9
H2 C25 C26 H3 61.9 300.1
H2 C25 C26 H4 181.9 60.0
H2 C25 C26 H5 302.0 180.1
H3 C26 C25 H2 61.9 300.1
C25 C26 H3 H4 120.0 119.9
C25 C26 H3 H5 240.0 240.0
H4 C26 H3 H5 120.0 120.1
H4 C26 C25 H2 181.9 60.0
C25 C26 H4 H3 240.0 240.1
C25 C26 H4 H5 120.0 120.0
H3 C26 H4 H5 240.0 239.9
H5 C26 C25 H2 302.0 180.1
C25 C26 H5 H3 120.0 120.0
C25 C26 H5 H4 240.0 240.0
H3 C26 H5 H4 120.0 120.0
C23 C24 H6 H7 119.2 240.0
H6 C24 C25 H2 180.4 175.0
C23 C24 H7 H6 240.8 120.0
H7 C24 C25 H2 61.0 295.0
C22 C23 H8 H9 119.0 240.0
H8 C23 C24 H6 175.2 180.0
H8 C23 C24 H7 294.7 60.0
C22 C23 H9 H8 241.0 120.0
H9 C23 C24 H6 55.9 300.0
H9 C23 C24 H7 175.4 180.0
C20 C22 H10 H11 117.9 240.0
H10 C22 C23 H8 67.5 180.0
H10 C22 C23 H9 186.8 60.0
C20 C22 H11 H10 242.1 120.0
H11 C22 C23 H8 308.9 300.0
H11 C22 C23 H9 68.3 180.0
H12 C20 C22 H10 62.2 185.0
H12 C20 C22 H11 180.8 64.9
H13 C21 C20 H12 62.2 300.0
H14 C21 H13 H15 120.0 120.0
H14 C21 C20 H12 182.2 60.0
H13 C21 H14 H15 240.1 240.0
H15 C21 C20 H12 302.2 180.0
H13 C21 H15 H14 120.0 120.0
H16 C17 C16 H17 144.5 4.3
H16 C17 C16 H18 24.5 125.8
H16 C17 C20 H12 184.4 179.3
C15 C16 H17 H18 119.9 238.4
H17 C16 C17 H16 144.5 4.3
C17 C16 H17 H18 240.1 121.5
C15 C16 H18 H17 240.1 121.6
H18 C16 C17 H16 24.5 125.8
C17 C16 H18 H17 119.9 238.5
C14 C15 H19 H20 123.0 236.5
H19 C15 C16 H17 10.6 23.3
H19 C15 C16 H18 130.6 261.7
C14 C15 H20 H19 237.0 123.4
H20 C15 C16 H17 248.6 146.5
H20 C15 C16 H18 8.5 24.9
C8 C14 H21 C13 121.5 117.0
H21 C14 C15 H19 198.1 317.4
H21 C14 C15 H20 320.3 194.0
H21 C14 C13 C18 172.9 171.8
C5 C6 H23 H24 117.7 240.2
H23 C6 C7 H22 79.1 326.6
C5 C6 H24 H23 242.3 119.9
H24 C6 C7 H22 320.6 86.5
C13 C18 H25 H26 120.0 119.9
C13 C18 H25 H27 240.0 240.0
H26 C18 H25 H27 120.0 120.1
C13 C18 H26 H25 240.0 240.1
C13 C18 H26 H27 120.0 120.0
H25 C18 H26 H27 240.0 240.0
C13 C18 H27 H25 120.0 120.0
C13 C18 H27 H26 240.0 240.0
H25 C18 H27 H26 120.0 120.0
C11 C12 H28 H29 118.9 239.0
C11 C12 H29 H28 241.1 120.9
C9 C11 H30 H31 116.7 240.9
H30 C11 C12 H28 306.3 302.9
H30 C11 C12 H29 65.5 182.0
C9 C11 H31 H30 243.3 118.1
H31 C11 C12 H28 188.4 61.9
H31 C11 C12 H29 307.6 301.0
H32 C9 C11 H30 51.6 169.4
H32 C9 C11 H31 169.5 50.6
C2 C1 H33 H34 118.0 240.3
H33 C1 C10 C19 177.5 64.0
C2 C1 H34 H33 242.0 119.8
H34 C1 C10 C19 58.9 183.7
C10 C19 H35 H36 120.0 120.0
C10 C19 H35 H37 240.0 240.0
H36 C19 H35 H37 120.0 120.0
C10 C19 H36 H35 240.0 240.0
C10 C19 H36 H37 120.0 120.0
H35 C19 H36 H37 240.0 240.0
C10 C19 H37 H35 120.0 120.0
C10 C19 H37 H36 240.0 240.0
H35 C19 H37 H36 120.0 120.0
H38 C5 C6 H23 184.8 305.3
H38 C5 C6 H24 303.3 185.4
C3 C4 H39 H40 119.1 239.8
H39 C4 C5 H38 173.9 51.7
C3 C4 H40 H39 240.9 120.2
H40 C4 C5 H38 54.5 171.8
C3 C2 H41 H42 119.8 239.2
H41 C2 C1 H33 305.1 303.6
H41 C2 C1 H34 63.8 183.9
C3 C2 H42 H41 240.2 120.7
H42 C2 C1 H33 185.3 64.5
H42 C2 C1 H34 304.0 304.8