PDB Chemical Component D7P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D7P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1' C 1.320 1.348
N1' H1'1 1.020 0.971
N1' H1'2 1.020 0.970
N' CA' 1.481 1.469
N' HN'1 1.020 1.009
N' HN'2 1.020 1.009
CA' C' 1.547 1.507
CA' CB' 1.550 1.530
CA' HA' 1.115 1.090
C' O' 1.233 1.213
C' N 1.344 1.348
CB' CG' 1.536 1.508
CB' HB'1 1.114 1.090
CB' HB'2 1.115 1.090
CG' CD1 1.418 1.382
CG' CD2 1.421 1.383
CD1 CE1 1.412 1.383
CD1 HD1 1.103 1.081
CE1 CZ' 1.415 1.382
CE1 HE1 1.103 1.080
CZ' CE2 1.418 1.381
CZ' HZ' 1.103 1.080
CE2 CD2 1.418 1.383
CE2 HE2 1.103 1.080
CD2 HD2 1.102 1.080
N CA 1.510 1.465
N HN 1.020 0.970
CA C 1.527 1.507
CA CB 1.495 1.530
CA HA 1.115 1.090
C O 1.204 1.213
CB CG 1.529 1.531
CB HB1 1.115 1.090
CB HB2 1.115 1.090
CG CD 1.512 1.530
CG HG1 1.115 1.090
CG HG2 1.115 1.089
CD NE 1.467 1.465
CD HD1A 1.115 1.091
CD HD2A 1.115 1.090
NE CZ 1.311 1.375
NE HNE 1.020 0.970
CZ NH1 1.322 1.375
CZ NH2 1.333 1.304
NH1 NO 1.347 1.366
NH1 HH1 1.020 0.969
NH2 HH2 1.020 0.970
NO O2 1.285 1.463
NO O3 1.279 1.463
O2 HO2 0.950 0.968
O3 HO3 0.950 0.966

Bond Angles for D7P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C N1' H1'1 119.8 120.0
C N1' H1'2 118.1 120.0
N1' C CA 119.8 120.0
N1' C O 118.1 120.0
H1'1 N1' H1'2 122.1 120.0
CA' N' HN'1 112.8 106.7
CA' N' HN'2 107.9 106.7
N' CA' C' 107.9 109.4
N' CA' CB' 108.8 109.5
N' CA' HA' 112.0 109.5
HN'1 N' HN'2 112.8 106.7
C' CA' CB' 112.4 109.5
C' CA' HA' 108.3 109.4
CA' C' O' 121.1 120.0
CA' C' N 117.8 120.0
CB' CA' HA' 107.5 109.5
CA' CB' CG' 115.0 109.5
CA' CB' HB'1 110.2 109.5
CA' CB' HB'2 110.2 109.5
O' C' N 121.2 120.0
C' N CA 122.5 120.0
C' N HN 112.8 120.0
CG' CB' HB'1 110.2 109.5
CG' CB' HB'2 110.2 109.4
CB' CG' CD1 120.2 120.0
CB' CG' CD2 120.2 120.0
HB'1 CB' HB'2 100.1 109.5
CD1 CG' CD2 119.5 120.0
CG' CD1 CE1 120.5 120.0
CG' CD1 HD1 119.9 120.0
CG' CD2 CE2 120.1 119.9
CG' CD2 HD2 120.1 120.0
CE1 CD1 HD1 119.5 120.0
CD1 CE1 CZ' 119.9 120.0
CD1 CE1 HE1 119.9 119.9
CZ' CE1 HE1 120.2 120.1
CE1 CZ' CE2 120.1 120.0
CE1 CZ' HZ' 119.8 120.0
CE2 CZ' HZ' 120.0 120.0
CZ' CE2 CD2 119.9 120.0
CZ' CE2 HE2 120.1 120.0
CD2 CE2 HE2 120.0 120.0
CE2 CD2 HD2 119.9 120.0
CA N HN 124.8 120.0
N CA C 112.1 109.5
N CA CB 106.0 109.4
N CA HA 111.9 109.5
C CA CB 114.6 109.5
C CA HA 102.9 109.5
CA C O 122.1 120.0
CB CA HA 109.4 109.5
CA CB CG 112.3 109.5
CA CB HB1 111.2 109.5
CA CB HB2 111.2 109.5
CG CB HB1 111.2 109.5
CG CB HB2 111.2 109.5
CB CG CD 110.3 109.5
CB CG HG1 111.9 109.4
CB CG HG2 111.9 109.4
HB1 CB HB2 99.1 109.5
CD CG HG1 111.9 109.5
CD CG HG2 111.9 109.5
CG CD NE 110.5 109.5
CG CD HD1A 111.8 109.5
CG CD HD2A 111.8 109.5
HG1 CG HG2 98.5 109.5
NE CD HD1A 111.8 109.5
NE CD HD2A 111.8 109.5
CD NE CZ 129.1 120.1
CD NE HNE 105.3 120.0
HD1A CD HD2A 98.6 109.4
CZ NE HNE 105.4 119.9
NE CZ NH1 120.0 120.1
NE CZ NH2 117.0 120.0
NH1 CZ NH2 122.9 120.0
CZ NH1 NO 130.2 120.0
CZ NH1 HH1 105.0 120.0
CZ NH2 HH2 115.5 120.0
NO NH1 HH1 105.0 120.0
NH1 NO O2 117.7 106.7
NH1 NO O3 122.9 106.7
O2 NO O3 119.4 106.7
NO O2 HO2 117.7 106.7
NO O3 HO3 123.0 106.8

Torsion Angles for D7P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H1'1 N1' C H1'2 177.8 179.9
N CA C N1' 42.4 180.0
N1' C CA CB 281.5 60.0
N1' C CA HA 162.8 300.0
CA C N1' O 182.1 180.1
C N1' H1'1 H1'2 182.3 180.1
H1'1 N1' C CA 180.0 360.0
H1'1 N1' C O 357.8 179.9
C N1' H1'2 H1'1 177.8 179.9
H1'2 N1' C CA 2.1 180.0
H1'2 N1' C O 180.0 360.0
HN'1 N' CA' HN'2 234.7 246.3
C' CA' N' CB' 237.8 240.0
C' CA' N' HA' 119.1 120.0
N' CA' C' O' 47.4 20.0
N' CA' C' N 227.9 200.0
CB' CA' N' HA' 241.3 239.9
N' CA' CB' CG' 53.9 65.0
N' CA' CB' HB'1 288.7 185.0
N' CA' CB' HB'2 179.2 305.1
CA' N' HN'1 HN'2 122.6 113.8
HN'1 N' CA' C' 54.7 186.2
HN'1 N' CA' CB' 176.9 306.2
HN'1 N' CA' HA' 295.6 66.3
CA' N' HN'2 HN'1 234.7 246.2
HN'2 N' CA' C' 180.0 300.0
HN'2 N' CA' CB' 302.2 60.0
HN'2 N' CA' HA' 60.9 180.0
C' CA' N' HN'1 54.7 186.2
C' CA' N' HN'2 180.0 300.0
N' CA' C' CB' 120.0 120.0
N' CA' C' HA' 238.6 240.0
CB' CA' C' HA' 118.6 120.0
C' CA' CB' CG' 173.4 185.0
C' CA' CB' HB'1 48.1 305.0
C' CA' CB' HB'2 298.6 65.0
O' C' CA' N 179.5 180.0
CA' C' N CA 179.3 180.0
CA' C' N HN 359.3 0.0
CB' CA' N' HN'1 176.9 306.2
CB' CA' N' HN'2 302.2 60.0
N' CA' CB' C' 240.5 240.0
N' CA' CB' HA' 121.5 120.1
C' CA' CB' HA' 240.9 240.0
CB' CA' C' O' 287.4 260.0
CB' CA' C' N 107.9 80.0
CG' CB' CA' HB'1 125.3 240.0
CG' CB' CA' HB'2 234.8 119.9
CA' CB' CG' CD1 62.3 90.0
CA' CB' CG' CD2 242.5 269.7
HB'1 CB' CA' HB'2 109.5 240.0
HA' CA' N' HN'1 295.6 66.3
HA' CA' N' HN'2 60.9 180.0
N' CA' HA' C' 118.9 120.0
N' CA' HA' CB' 240.6 239.9
C' CA' HA' CB' 121.7 120.0
HA' CA' C' O' 168.8 140.0
HA' CA' C' N 349.3 320.0
HA' CA' CB' CG' 292.5 304.9
HA' CA' CB' HB'1 167.2 65.0
HA' CA' CB' HB'2 57.7 185.0
O' C' CA' CB' 287.4 260.0
O' C' CA' HA' 168.8 140.0
CA' C' O' N 180.5 180.0
O' C' N CA 359.8 360.0
O' C' N HN 179.8 180.1
N C' CA' CB' 107.9 80.0
N C' CA' HA' 349.3 320.0
CA' C' N O' 179.5 180.0
CA N C' HN 180.0 179.9
C' N CA C 64.6 85.0
C' N CA CB 190.3 205.0
C' N CA HA 309.5 325.0
CG' CB' CA' HA' 292.5 304.9
CA' CB' CG' HB'1 234.7 120.0
CA' CB' CG' HB'2 125.2 240.0
HB'1 CB' CG' HB'2 250.5 120.0
CD1 CG' CB' CD2 179.7 180.2
CB' CG' CD1 CE1 180.0 180.0
CB' CG' CD1 HD1 360.0 360.0
CB' CG' CD2 CE2 180.1 179.8
CB' CG' CD2 HD2 0.1 0.2
HB'1 CB' CA' HA' 167.2 65.0
CA' CB' HB'1 CG' 127.9 240.0
CA' CB' HB'1 HB'2 244.0 120.0
CG' CB' HB'1 HB'2 116.1 240.0
HB'1 CB' CG' CD1 187.5 330.0
HB'1 CB' CG' CD2 7.8 149.7
HB'2 CB' CA' HA' 57.7 185.0
CA' CB' HB'2 CG' 232.1 120.0
CA' CB' HB'2 HB'1 116.0 240.0
CG' CB' HB'2 HB'1 243.9 120.0
HB'2 CB' CG' CD1 297.0 210.0
HB'2 CB' CG' CD2 117.3 29.7
CD1 CG' CB' HB'1 187.5 330.0
CD1 CG' CB' HB'2 297.0 210.0
CB' CG' CD1 CD2 180.3 179.8
CD1 CG' CD2 CE2 0.4 359.5
CD1 CG' CD2 HD2 180.4 180.0
CE1 CD1 CG' HD1 180.0 180.0
CG' CD1 CE1 CZ' 0.2 360.0
CG' CD1 CE1 HE1 180.2 179.9
CD2 CG' CB' HB'1 7.8 149.7
CD2 CG' CB' HB'2 117.3 29.7
CB' CG' CD2 CD1 179.7 180.2
CD2 CG' CD1 CE1 359.7 0.3
CD2 CG' CD1 HD1 179.7 180.2
CZ' CE2 CD2 CG' 359.7 0.4
CG' CD2 CE2 HE2 179.7 180.3
CE2 CD2 CG' HD2 180.0 179.6
CE1 CD1 CG' CD2 359.7 0.3
CG' CD1 CE1 HD1 180.0 180.0
CZ' CE1 CD1 HE1 180.0 180.0
CD1 CE1 CZ' CE2 359.9 0.0
CD1 CE1 CZ' HZ' 179.9 180.0
HD1 CD1 CG' CD2 179.7 180.2
CG' CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 CZ' 180.2 180.0
HD1 CD1 CE1 HE1 0.2 360.0
CZ' CE1 CD1 HD1 180.2 180.0
CD1 CE1 CZ' HE1 180.0 180.0
CE2 CZ' CE1 HZ' 180.0 180.1
CE1 CZ' CE2 CD2 0.2 359.8
CE1 CZ' CE2 HE2 180.2 180.0
HE1 CE1 CD1 HD1 0.2 360.0
CD1 CE1 HE1 CZ' 180.0 180.0
HE1 CE1 CZ' CE2 179.9 180.0
HE1 CE1 CZ' HZ' 359.9 360.0
CG' CD2 CE2 CZ' 359.7 0.4
CE2 CZ' CE1 HE1 179.9 180.0
CE1 CZ' CE2 HZ' 180.0 179.9
CD2 CE2 CZ' HE2 180.0 179.8
CZ' CE2 CD2 HD2 179.6 180.0
HZ' CZ' CE1 HE1 359.9 360.0
CE1 CZ' HZ' CE2 180.0 180.1
HZ' CZ' CE2 CD2 180.2 179.9
HZ' CZ' CE2 HE2 0.2 0.0
CG' CD2 CE2 HD2 180.0 180.4
CD2 CE2 CZ' HZ' 180.2 179.9
CZ' CE2 CD2 HE2 180.0 180.2
HE2 CE2 CZ' HZ' 0.2 0.0
CZ' CE2 HE2 CD2 180.0 179.8
HE2 CE2 CD2 HD2 359.6 359.8
CG' CD2 HD2 CE2 180.0 179.6
HD2 CD2 CE2 HE2 359.6 359.8
N1' C CA N 42.4 180.0
C' N CA HN 180.0 180.1
C CA N CB 234.3 240.0
C CA N HA 115.1 120.0
N CA C O 224.6 0.0
CB CA N HA 240.8 240.0
N CA CB CG 147.5 65.1
N CA CB HB1 22.2 185.0
N CA CB HB2 272.8 305.1
C' N HN CA 180.0 179.9
HN N CA C 244.6 265.0
HN N CA CB 10.3 24.9
HN N CA HA 129.5 144.9
CA C N1' H1'1 180.0 360.0
CA C N1' H1'2 2.1 180.0
N1' C CA O 177.8 179.9
C CA N HN 244.6 265.0
N CA C CB 120.9 120.0
N CA C HA 239.6 240.0
CB CA C HA 118.6 120.0
C CA CB CG 271.7 185.0
C CA CB HB1 146.4 305.0
C CA CB HB2 37.0 65.0
CB CA N HN 10.3 24.9
N CA CB C 235.8 240.0
N CA CB HA 120.9 120.0
C CA CB HA 245.1 240.0
CB CA C O 103.7 240.1
CG CB CA HB1 125.3 240.0
CG CB CA HB2 234.7 120.0
CA CB CG CD 178.8 180.0
CA CB CG HG1 53.5 299.9
CA CB CG HG2 304.1 60.0
HB1 CB CA HB2 109.4 240.0
HA CA N HN 129.5 144.9
N CA HA C 120.6 120.0
N CA HA CB 242.8 240.0
C CA HA CB 122.2 120.0
HA CA C O 345.1 120.1
HA CA CB CG 26.7 305.0
HA CA CB HB1 261.4 65.0
HA CA CB HB2 152.0 185.0
O C N1' H1'1 357.8 179.9
O C N1' H1'2 180.0 360.0
N1' C O CA 182.2 180.1
O C CA CB 103.7 240.1
O C CA HA 345.1 120.1
CG CB CA HA 26.7 305.0
CA CB CG HB1 234.7 120.0
CA CB CG HB2 125.3 240.0
HB1 CB CG HB2 250.6 120.0
CD CG CB HG1 125.3 240.1
CD CG CB HG2 234.8 120.0
CB CG CD NE 168.9 180.0
CB CG CD HD1A 43.6 300.0
CB CG CD HD2A 294.2 60.0
HG1 CG CB HG2 109.5 240.0
HB1 CB CA HA 261.4 65.0
CA CB HB1 CG 125.9 240.0
CA CB HB1 HB2 243.0 120.1
CG CB HB1 HB2 117.1 240.0
HB1 CB CG CD 304.1 60.0
HB1 CB CG HG1 178.8 180.0
HB1 CB CG HG2 69.3 300.0
HB2 CB CA HA 152.0 185.0
CA CB HB2 CG 234.1 120.0
CA CB HB2 HB1 117.0 240.0
CG CB HB2 HB1 242.9 120.0
HB2 CB CG CD 53.5 300.0
HB2 CB CG HG1 288.2 60.0
HB2 CB CG HG2 178.8 180.0
CD CG CB HB1 304.1 60.0
CD CG CB HB2 53.5 300.0
CB CG CD HG1 234.7 119.9
CB CG CD HG2 125.3 240.0
HG1 CG CD HG2 250.5 120.1
NE CD CG HD1A 125.3 240.0
NE CD CG HD2A 234.7 120.0
CG CD NE CZ 131.9 180.0
CG CD NE HNE 6.6 0.0
HD1A CD CG HD2A 109.5 240.0
HG1 CG CB HB1 178.8 180.0
HG1 CG CB HB2 288.2 60.0
CB CG HG1 CD 124.4 240.1
CB CG HG1 HG2 242.2 120.0
CD CG HG1 HG2 117.8 239.9
HG1 CG CD NE 294.2 60.1
HG1 CG CD HD1A 168.9 180.1
HG1 CG CD HD2A 59.4 300.0
HG2 CG CB HB1 69.3 300.0
HG2 CG CB HB2 178.8 180.0
CB CG HG2 CD 235.6 120.0
CB CG HG2 HG1 117.8 240.0
CD CG HG2 HG1 242.2 120.1
HG2 CG CD NE 43.6 300.0
HG2 CG CD HD1A 278.3 60.0
HG2 CG CD HD2A 168.9 179.9
NE CD CG HG1 294.2 60.1
NE CD CG HG2 43.6 300.0
CG CD NE HD1A 234.7 120.0
CG CD NE HD2A 125.2 239.9
HD1A CD NE HD2A 250.5 119.9
CZ NE CD HNE 125.3 180.0
CD NE CZ NH1 0.5 180.0
CD NE CZ NH2 180.0 360.0
HD1A CD CG HG1 168.9 180.1
HD1A CD CG HG2 278.3 60.0
CG CD HD1A NE 124.6 240.0
CG CD HD1A HD2A 242.3 120.0
NE CD HD1A HD2A 117.7 240.0
HD1A CD NE CZ 257.2 60.0
HD1A CD NE HNE 131.9 240.0
HD2A CD CG HG1 59.4 300.0
HD2A CD CG HG2 168.9 179.9
CG CD HD2A NE 235.4 120.0
CG CD HD2A HD1A 117.7 240.0
NE CD HD2A HD1A 242.3 120.0
HD2A CD NE CZ 6.7 300.0
HD2A CD NE HNE 241.4 120.1
CZ NE CD HD1A 257.2 60.0
CZ NE CD HD2A 6.7 300.0
CD NE CZ HNE 234.7 180.0
NH1 CZ NE NH2 180.4 180.0
NE CZ NH1 NO 183.6 180.0
NE CZ NH1 HH1 58.4 360.0
NE CZ NH2 HH2 77.2 180.0
HNE NE CD HD1A 131.9 240.0
HNE NE CD HD2A 241.4 120.1
CD NE HNE CZ 138.9 180.0
HNE NE CZ NH1 125.7 360.0
HNE NE CZ NH2 305.3 180.0
NH1 CZ NE HNE 125.7 360.0
NE CZ NH1 NH2 179.6 180.0
NH1 CZ NH2 HH2 256.8 359.9
NO NH1 CZ HH1 125.2 180.0
CZ NH1 NO O2 168.7 126.2
CZ NH1 NO O3 348.0 240.0
NH2 CZ NE HNE 305.3 180.0
NE CZ NH2 NH1 180.4 180.0
NH2 CZ NH1 NO 4.1 0.0
NH2 CZ NH1 HH1 238.8 180.0
NO NH1 CZ NH2 4.1 0.0
CZ NH1 NO HH1 234.8 180.0
O2 NO NH1 O3 180.7 246.2
NH1 NO O2 HO2 180.0 180.0
NH1 NO O3 HO3 180.0 180.0
HH1 NH1 CZ NH2 238.8 180.0
CZ NH1 HH1 NO 139.8 180.0
HH1 NH1 NO O2 294.0 306.2
HH1 NH1 NO O3 113.3 60.0
O2 NO NH1 HH1 294.0 306.2
NH1 NO O2 O3 179.4 113.8
O2 NO O3 HO3 359.3 293.8
O3 NO NH1 HH1 113.3 60.0
NH1 NO O3 O2 180.7 246.2
O3 NO O2 HO2 0.6 66.2
HO2 O2 NO O3 0.6 66.2