data_D7P
# 
_chem_comp.id                                    D7P 
_chem_comp.name                                  "D-PHENYLALANYL-N~5~-[(2,2-DIHYDROXYHYDRAZINO)(IMINO)METHYL]-D-ORNITHINAMIDE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H25 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "D-PHENYLALANINE-D-NITROARGININE AMIDE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-12-18 
_chem_comp.pdbx_modified_date                    2021-03-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        367.404 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D7P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1RS7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D7P "N1'"  "N1'"  N 0 1 N N N 6.488  2.173  22.705 -0.571 -4.866 -0.591 "N1'"  D7P 1  
D7P "N'"   "N'"   N 0 1 N N N 4.861  2.220  28.276 -3.588 0.496  2.175  "N'"   D7P 2  
D7P "CA'"  "CA'"  C 0 1 N N R 5.253  2.965  27.057 -2.987 0.214  0.865  "CA'"  D7P 3  
D7P "C'"   "C'"   C 0 1 N N N 5.948  1.972  26.095 -2.156 -1.040 0.954  "C'"   D7P 4  
D7P "O'"   "O'"   O 0 1 N N N 5.452  0.870  25.851 -2.344 -1.830 1.855  "O'"   D7P 5  
D7P "CB'"  "CB'"  C 0 1 N N N 3.986  3.603  26.433 -4.094 0.019  -0.173 "CB'"  D7P 6  
D7P "CG'"  "CG'"  C 0 1 Y N N 3.161  4.476  27.391 -4.849 1.312  -0.351 "CG'"  D7P 7  
D7P CD1    CD1    C 0 1 Y N N 3.730  5.642  27.964 -4.437 2.227  -1.301 CD1    D7P 8  
D7P CE1    CE1    C 0 1 Y N N 2.977  6.449  28.845 -5.129 3.413  -1.464 CE1    D7P 9  
D7P "CZ'"  "CZ'"  C 0 1 Y N N 1.645  6.092  29.163 -6.233 3.682  -0.677 "CZ'"  D7P 10 
D7P CE2    CE2    C 0 1 Y N N 1.065  4.928  28.597 -6.645 2.767  0.272  CE2    D7P 11 
D7P CD2    CD2    C 0 1 Y N N 1.824  4.118  27.714 -5.956 1.579  0.433  CD2    D7P 12 
D7P N      N      N 0 1 N N N 7.115  2.347  25.543 -1.203 -1.284 0.032  N      D7P 13 
D7P CA     CA     C 0 1 N N R 7.890  1.456  24.602 -0.395 -2.503 0.119  CA     D7P 14 
D7P C      C      C 0 1 N N N 7.129  1.188  23.306 -1.127 -3.639 -0.548 C      D7P 15 
D7P O      O      O 0 1 N N N 7.057  0.088  22.823 -2.216 -3.449 -1.047 O      D7P 16 
D7P CB     CB     C 0 1 N N N 9.222  2.110  24.417 0.945  -2.277 -0.584 CB     D7P 17 
D7P CG     CG     C 0 1 N N N 10.344 1.093  24.207 1.742  -1.209 0.169  CG     D7P 18 
D7P CD     CD     C 0 1 N N N 11.663 1.802  23.996 3.082  -0.983 -0.534 CD     D7P 19 
D7P NE     NE     N 0 1 N N N 12.776 0.848  24.057 3.845  0.039  0.186  NE     D7P 20 
D7P CZ     CZ     C 0 1 N N N 13.785 0.702  23.233 5.090  0.412  -0.262 CZ     D7P 21 
D7P NH1    NH1    N 0 1 N N N 13.896 1.489  22.177 5.806  1.371  0.414  NH1    D7P 22 
D7P NH2    NH2    N 0 1 N N N 14.669 -0.253 23.521 5.592  -0.145 -1.329 NH2    D7P 23 
D7P NO     NO     N 0 1 N N N 14.797 1.479  21.176 7.043  1.741  -0.032 NO     D7P 24 
D7P O2     O2     O 0 1 N N N 14.557 2.214  20.150 7.017  3.196  -0.184 O2     D7P 25 
D7P O3     O3     O 0 1 N N N 15.871 0.786  21.214 7.985  1.448  1.048  O3     D7P 26 
D7P "H1'1" "1H1'" H 0 0 N N N 5.980  1.994  21.839 0.301  -5.018 -0.193 "H1'1" D7P 27 
D7P "H1'2" "2H1'" H 0 0 N N N 6.549  3.105  23.114 -1.042 -5.597 -1.021 "H1'2" D7P 28 
D7P "HN'1" "1HN'" H 0 0 N N N 5.645  1.732  28.710 -4.214 1.277  2.045  "HN'1" D7P 29 
D7P "HN'2" "2HN'" H 0 0 N N N 4.403  2.875  28.910 -4.163 -0.300 2.408  "HN'2" D7P 30 
D7P "HA'"  "HA'"  H 0 1 N N N 5.967  3.791  27.284 -2.353 1.049  0.568  "HA'"  D7P 31 
D7P "HB'1" "1HB'" H 0 0 N N N 3.342  2.815  25.979 -3.652 -0.278 -1.124 "HB'1" D7P 32 
D7P "HB'2" "2HB'" H 0 0 N N N 4.257  4.183  25.520 -4.779 -0.757 0.168  "HB'2" D7P 33 
D7P HD1    HD1    H 0 1 N N N 4.769  5.924  27.722 -3.574 2.016  -1.916 HD1    D7P 34 
D7P HE1    HE1    H 0 1 N N N 3.428  7.355  29.283 -4.806 4.128  -2.206 HE1    D7P 35 
D7P "HZ'"  "HZ'"  H 0 1 N N N 1.058  6.722  29.853 -6.773 4.609  -0.804 "HZ'"  D7P 36 
D7P HE2    HE2    H 0 1 N N N 0.026  4.653  28.843 -7.507 2.978  0.887  HE2    D7P 37 
D7P HD2    HD2    H 0 1 N N N 1.375  3.210  27.279 -6.278 0.864  1.175  HD2    D7P 38 
D7P HN     HN     H 0 1 N N N 7.405  3.282  25.830 -1.052 -0.652 -0.688 HN     D7P 39 
D7P HA     HA     H 0 1 N N N 8.035  0.433  25.022 -0.219 -2.749 1.166  HA     D7P 40 
D7P HB1    1HB    H 0 1 N N N 9.454  2.797  25.264 1.510  -3.209 -0.598 HB1    D7P 41 
D7P HB2    2HB    H 0 1 N N N 9.193  2.855  23.588 0.768  -1.944 -1.607 HB2    D7P 42 
D7P HG1    1HG    H 0 1 N N N 10.114 0.386  23.376 1.177  -0.277 0.182  HG1    D7P 43 
D7P HG2    2HG    H 0 1 N N N 10.398 0.355  25.041 1.919  -1.542 1.191  HG2    D7P 44 
D7P HD1A   1HD    H 0 0 N N N 11.800 2.645  24.713 3.647  -1.916 -0.548 HD1A   D7P 45 
D7P HD2A   2HD    H 0 0 N N N 11.671 2.388  23.047 2.905  -0.651 -1.557 HD2A   D7P 46 
D7P HNE    HNE    H 0 1 N N N 12.340 -0.072 24.117 3.472  0.453  0.980  HNE    D7P 47 
D7P HH1    HH1    H 0 1 N N N 13.933 2.435  22.556 5.433  1.785  1.207  HH1    D7P 48 
D7P HH2    HH2    H 0 1 N N N 14.374 -1.204 23.301 6.470  0.118  -1.646 HH2    D7P 49 
D7P HO2    HO2    H 0 1 N N N 15.193 2.207  19.444 7.893  3.459  -0.500 HO2    D7P 50 
D7P HO3    HO3    H 0 1 N N N 16.507 0.779  20.508 8.861  1.709  0.734  HO3    D7P 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D7P "N1'" C      SING N N 1  
D7P "N1'" "H1'1" SING N N 2  
D7P "N1'" "H1'2" SING N N 3  
D7P "N'"  "CA'"  SING N N 4  
D7P "N'"  "HN'1" SING N N 5  
D7P "N'"  "HN'2" SING N N 6  
D7P "CA'" "C'"   SING N N 7  
D7P "CA'" "CB'"  SING N N 8  
D7P "CA'" "HA'"  SING N N 9  
D7P "C'"  "O'"   DOUB N N 10 
D7P "C'"  N      SING N N 11 
D7P "CB'" "CG'"  SING N N 12 
D7P "CB'" "HB'1" SING N N 13 
D7P "CB'" "HB'2" SING N N 14 
D7P "CG'" CD1    DOUB Y N 15 
D7P "CG'" CD2    SING Y N 16 
D7P CD1   CE1    SING Y N 17 
D7P CD1   HD1    SING N N 18 
D7P CE1   "CZ'"  DOUB Y N 19 
D7P CE1   HE1    SING N N 20 
D7P "CZ'" CE2    SING Y N 21 
D7P "CZ'" "HZ'"  SING N N 22 
D7P CE2   CD2    DOUB Y N 23 
D7P CE2   HE2    SING N N 24 
D7P CD2   HD2    SING N N 25 
D7P N     CA     SING N N 26 
D7P N     HN     SING N N 27 
D7P CA    C      SING N N 28 
D7P CA    CB     SING N N 29 
D7P CA    HA     SING N N 30 
D7P C     O      DOUB N N 31 
D7P CB    CG     SING N N 32 
D7P CB    HB1    SING N N 33 
D7P CB    HB2    SING N N 34 
D7P CG    CD     SING N N 35 
D7P CG    HG1    SING N N 36 
D7P CG    HG2    SING N N 37 
D7P CD    NE     SING N N 38 
D7P CD    HD1A   SING N N 39 
D7P CD    HD2A   SING N N 40 
D7P NE    CZ     SING N N 41 
D7P NE    HNE    SING N N 42 
D7P CZ    NH1    SING N N 43 
D7P CZ    NH2    DOUB N N 44 
D7P NH1   NO     SING N N 45 
D7P NH1   HH1    SING N N 46 
D7P NH2   HH2    SING N N 47 
D7P NO    O2     SING N N 48 
D7P NO    O3     SING N N 49 
D7P O2    HO2    SING N N 50 
D7P O3    HO3    SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D7P SMILES           ACDLabs              10.04 "O=C(N)C(NC(=O)C(N)Cc1ccccc1)CCCNC(=[N@H])NN(O)O"                                                                                                                               
D7P SMILES_CANONICAL CACTVS               3.341 "N[C@H](Cc1ccccc1)C(=O)N[C@H](CCCNC(=N)NN(O)O)C(N)=O"                                                                                                                           
D7P SMILES           CACTVS               3.341 "N[CH](Cc1ccccc1)C(=O)N[CH](CCCNC(=N)NN(O)O)C(N)=O"                                                                                                                             
D7P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@H](C(=O)N[C@H](CCCNC(=N)NN(O)O)C(=O)N)N"                                                                                                                         
D7P SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC(C(=O)NC(CCCNC(=N)NN(O)O)C(=O)N)N"                                                                                                                                 
D7P InChI            InChI                1.03  "InChI=1S/C15H25N7O4/c16-11(9-10-5-2-1-3-6-10)14(24)20-12(13(17)23)7-4-8-19-15(18)21-22(25)26/h1-3,5-6,11-12,25-26H,4,7-9,16H2,(H2,17,23)(H,20,24)(H3,18,19,21)/t11-,12-/m1/s1" 
D7P InChIKey         InChI                1.03  XHGCEQHFMHULSW-VXGBXAGGSA-N                                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D7P "SYSTEMATIC NAME" ACDLabs              10.04 "D-phenylalanyl-N~5~-[(E)-(2,2-dihydroxyhydrazino)(imino)methyl]-D-ornithinamide"                       
D7P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[[(2R)-2-amino-3-phenyl-propanoyl]amino]-5-[[N-(dihydroxyamino)carbamimidoyl]amino]pentanamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      D7P 
_pdbx_chem_comp_synonyms.name         "D-PHENYLALANINE-D-NITROARGININE AMIDE" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D7P "Create component"  2003-12-18 RCSB 
D7P "Modify descriptor" 2011-06-04 RCSB 
D7P "Modify synonyms"   2021-03-01 PDBE 
# 
