PDB Chemical Component D71
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D71
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.351 |
1.395 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
C16 |
1.463 |
1.472 |
| C3 |
C2 |
1.479 |
1.406 |
| C3 |
N13 |
1.434 |
1.386 |
| C5 |
C6 |
1.364 |
1.386 |
| C5 |
N4 |
1.411 |
1.318 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
C1 |
1.481 |
1.385 |
| C6 |
H6 |
1.080 |
1.080 |
| C14 |
N15 |
1.442 |
1.342 |
| C14 |
O52 |
1.238 |
1.215 |
| N54 |
O56 |
1.360 |
1.218 |
| O58 |
N54 |
1.341 |
1.218 |
| C40 |
N54 |
1.399 |
1.480 |
| C40 |
C39 |
1.360 |
1.381 |
| C39 |
H39 |
1.080 |
1.080 |
| C41 |
C40 |
1.478 |
1.383 |
| C41 |
H41 |
1.080 |
1.080 |
| C42 |
C41 |
1.336 |
1.383 |
| C42 |
C43 |
1.472 |
1.381 |
| C42 |
H42 |
1.080 |
1.080 |
| C43 |
C22 |
1.356 |
1.389 |
| C43 |
H43 |
1.080 |
1.080 |
| C22 |
C39 |
1.472 |
1.388 |
| C22 |
N13 |
1.465 |
1.401 |
| N13 |
C14 |
1.445 |
1.344 |
| N4 |
C3 |
1.321 |
1.322 |
| N15 |
C24 |
1.496 |
1.465 |
| C16 |
N15 |
1.424 |
1.351 |
| C16 |
O50 |
1.260 |
1.216 |
| C24 |
C26 |
1.515 |
1.507 |
| C24 |
H24 |
1.100 |
1.091 |
| C24 |
H24A |
1.100 |
1.089 |
| C26 |
C32 |
1.357 |
1.386 |
| C32 |
C31 |
1.483 |
1.382 |
| C32 |
H32 |
1.080 |
1.081 |
| C31 |
H31 |
1.080 |
1.080 |
| N30 |
C31 |
1.298 |
1.319 |
| C29 |
N30 |
1.425 |
1.319 |
| C29 |
H29 |
1.080 |
1.080 |
| C28 |
C26 |
1.486 |
1.386 |
| C28 |
C29 |
1.337 |
1.382 |
| C28 |
H28 |
1.081 |
1.080 |
Bond Angles for D71
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
119.9 |
121.1 |
| C1 |
C2 |
C16 |
121.7 |
122.0 |
| C6 |
C1 |
H1 |
120.0 |
121.1 |
| C3 |
C2 |
C16 |
120.1 |
118.5 |
| C2 |
C16 |
N15 |
120.3 |
118.2 |
| C2 |
C16 |
O50 |
119.2 |
120.9 |
| C3 |
N13 |
C22 |
121.8 |
119.6 |
| C3 |
N13 |
C14 |
120.6 |
120.8 |
| C6 |
C5 |
N4 |
120.5 |
121.5 |
| C6 |
C5 |
H5 |
119.7 |
119.2 |
| C5 |
C6 |
H6 |
120.5 |
120.3 |
| N4 |
C5 |
H5 |
119.8 |
119.3 |
| O52 |
C14 |
N15 |
119.7 |
118.6 |
| N13 |
C14 |
N15 |
121.3 |
122.9 |
| C14 |
N15 |
C24 |
119.2 |
119.4 |
| N13 |
C14 |
O52 |
119.0 |
118.5 |
| C40 |
C39 |
H39 |
120.2 |
120.0 |
| C22 |
C39 |
H39 |
120.2 |
120.0 |
| C42 |
C41 |
H41 |
119.5 |
119.9 |
| C43 |
C42 |
H42 |
120.2 |
120.0 |
| C42 |
C43 |
C22 |
120.1 |
120.0 |
| C42 |
C43 |
H43 |
119.9 |
120.0 |
| C22 |
C43 |
H43 |
120.0 |
120.0 |
| C43 |
C22 |
N13 |
118.4 |
120.1 |
| C16 |
N15 |
C24 |
121.3 |
119.5 |
| N15 |
C24 |
C26 |
111.5 |
109.5 |
| N15 |
C24 |
H24 |
108.8 |
109.4 |
| N15 |
C24 |
H24A |
108.4 |
109.5 |
| C26 |
C24 |
H24 |
108.8 |
109.5 |
| C26 |
C24 |
H24A |
108.3 |
109.5 |
| C24 |
C26 |
C32 |
123.8 |
120.8 |
| H24 |
C24 |
H24A |
111.0 |
109.5 |
| C26 |
C32 |
C31 |
118.4 |
119.2 |
| C26 |
C32 |
H32 |
120.8 |
120.4 |
| C31 |
C32 |
H32 |
120.8 |
120.4 |
| C32 |
C31 |
H31 |
120.2 |
119.6 |
| N30 |
C31 |
H31 |
120.3 |
119.7 |
| C28 |
C29 |
H29 |
119.8 |
119.6 |
Torsion Angles for D71
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C3 |
C2 |
C1 |
C16 |
180.1 |
180.0 |
| C1 |
C2 |
C16 |
N15 |
179.6 |
180.0 |
| C1 |
C2 |
C16 |
O50 |
1.3 |
360.0 |
| H1 |
C1 |
C2 |
C16 |
0.2 |
360.0 |
| C16 |
C2 |
C1 |
H1 |
0.2 |
360.0 |
| C2 |
C16 |
N15 |
C24 |
180.3 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
180.4 |
180.0 |
| C1 |
C2 |
C3 |
C16 |
179.9 |
180.0 |
| C3 |
C2 |
C16 |
N15 |
359.5 |
0.0 |
| C3 |
C2 |
C16 |
O50 |
181.1 |
180.0 |
| N13 |
C3 |
C2 |
C16 |
359.9 |
0.0 |
| C3 |
N13 |
C14 |
N15 |
0.4 |
360.0 |
| C3 |
N13 |
C14 |
O52 |
180.1 |
180.0 |
| C43 |
C22 |
N13 |
C3 |
64.0 |
89.8 |
| C5 |
C6 |
C1 |
H1 |
179.6 |
180.3 |
| N4 |
C5 |
C6 |
H5 |
180.0 |
179.5 |
| C6 |
C5 |
N4 |
H5 |
180.0 |
180.5 |
| N4 |
C5 |
C6 |
H6 |
180.5 |
180.0 |
| C6 |
C5 |
H5 |
N4 |
180.0 |
179.5 |
| H5 |
C5 |
C6 |
H6 |
0.5 |
0.5 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C6 |
C1 |
C2 |
C16 |
180.3 |
180.3 |
| H6 |
C6 |
C1 |
H1 |
359.6 |
359.8 |
| H6 |
C6 |
C5 |
N4 |
180.5 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.5 |
0.5 |
| C2 |
C16 |
N15 |
C14 |
1.1 |
360.0 |
| N13 |
C14 |
N15 |
O52 |
179.7 |
180.0 |
| C16 |
N15 |
C14 |
C24 |
179.2 |
180.0 |
| C14 |
N15 |
C24 |
C26 |
64.8 |
90.0 |
| C14 |
N15 |
C24 |
H24 |
184.8 |
210.0 |
| C14 |
N15 |
C24 |
H24A |
305.6 |
330.0 |
| N13 |
C14 |
O52 |
N15 |
180.3 |
180.0 |
| O52 |
C14 |
N15 |
C24 |
0.1 |
359.9 |
| C22 |
C39 |
C40 |
H39 |
180.0 |
179.9 |
| C41 |
C40 |
C39 |
H39 |
181.2 |
180.3 |
| C43 |
C42 |
C41 |
H41 |
180.5 |
180.0 |
| C22 |
C43 |
C42 |
H43 |
180.0 |
180.3 |
| C42 |
C43 |
C22 |
N13 |
179.3 |
180.0 |
| H42 |
C42 |
C41 |
H41 |
0.5 |
0.0 |
| H42 |
C42 |
C43 |
C22 |
179.3 |
180.3 |
| H42 |
C42 |
C43 |
H43 |
359.3 |
360.0 |
| C3 |
N13 |
C22 |
C43 |
64.0 |
89.8 |
| C43 |
C22 |
C39 |
H39 |
178.6 |
180.0 |
| C22 |
C43 |
C42 |
H42 |
179.3 |
180.3 |
| C42 |
C43 |
C22 |
H43 |
180.0 |
179.7 |
| H43 |
C43 |
C42 |
H42 |
359.3 |
360.0 |
| C42 |
C43 |
H43 |
C22 |
180.0 |
180.3 |
| H43 |
C43 |
C22 |
N13 |
359.4 |
0.3 |
| C3 |
N13 |
C22 |
C39 |
242.3 |
270.2 |
| C40 |
C39 |
C22 |
H39 |
180.0 |
180.1 |
| C3 |
N13 |
C22 |
C14 |
179.0 |
180.0 |
| C22 |
N13 |
C14 |
N15 |
179.4 |
180.0 |
| C22 |
N13 |
C14 |
O52 |
359.1 |
0.1 |
| N13 |
C22 |
C39 |
H39 |
0.4 |
359.7 |
| N13 |
C22 |
C43 |
H43 |
359.4 |
0.3 |
| C3 |
N13 |
C14 |
C22 |
181.0 |
180.0 |
| O52 |
C14 |
N13 |
N15 |
179.7 |
180.0 |
| N13 |
C14 |
N15 |
C24 |
179.8 |
180.0 |
| N4 |
C3 |
C2 |
C16 |
179.6 |
180.0 |
| C26 |
C24 |
N15 |
H24 |
240.0 |
240.0 |
| C26 |
C24 |
N15 |
H24A |
119.1 |
120.0 |
| N15 |
C24 |
C26 |
C32 |
262.6 |
90.0 |
| H24 |
C24 |
N15 |
H24A |
239.2 |
240.0 |
| C2 |
C16 |
N15 |
O50 |
181.7 |
180.0 |
| C14 |
N15 |
C16 |
C24 |
180.8 |
180.0 |
| C16 |
N15 |
C24 |
C26 |
245.5 |
270.0 |
| C16 |
N15 |
C24 |
H24 |
5.6 |
30.0 |
| C16 |
N15 |
C24 |
H24A |
126.4 |
149.9 |
| C2 |
C16 |
O50 |
N15 |
178.4 |
180.0 |
| O50 |
C16 |
N15 |
C24 |
358.6 |
0.1 |
| N15 |
C24 |
C26 |
H24 |
120.0 |
120.0 |
| N15 |
C24 |
C26 |
H24A |
240.8 |
240.0 |
| H24 |
C24 |
C26 |
H24A |
120.8 |
120.0 |
| C24 |
C26 |
C32 |
C31 |
178.1 |
180.0 |
| C24 |
C26 |
C32 |
H32 |
358.1 |
360.0 |
| N15 |
C24 |
H24 |
C26 |
238.3 |
240.0 |
| N15 |
C24 |
H24 |
H24A |
119.2 |
120.0 |
| C26 |
C24 |
H24 |
H24A |
240.8 |
240.0 |
| H24 |
C24 |
C26 |
C32 |
142.6 |
330.0 |
| N15 |
C24 |
H24A |
C26 |
121.1 |
120.0 |
| N15 |
C24 |
H24A |
H24 |
240.5 |
240.0 |
| C26 |
C24 |
H24A |
H24 |
119.4 |
120.0 |
| H24A |
C24 |
C26 |
C32 |
21.8 |
210.0 |
| C32 |
C26 |
C24 |
H24 |
142.6 |
330.0 |
| C32 |
C26 |
C24 |
H24A |
21.8 |
210.0 |
| C31 |
C32 |
C26 |
H32 |
180.0 |
180.0 |
| C26 |
C32 |
C31 |
H31 |
179.5 |
180.0 |
| C26 |
C32 |
C31 |
H32 |
180.0 |
180.0 |
| N30 |
C31 |
C32 |
H31 |
180.0 |
180.1 |
| C26 |
C32 |
H32 |
C31 |
180.0 |
180.0 |
| H32 |
C32 |
C31 |
H31 |
359.5 |
360.0 |
| H31 |
C31 |
C32 |
H32 |
359.5 |
360.0 |
| N30 |
C31 |
C32 |
H32 |
179.5 |
180.1 |
| C32 |
C31 |
N30 |
H31 |
180.0 |
179.9 |
| C29 |
N30 |
C31 |
H31 |
180.7 |
180.0 |
| C28 |
C26 |
C24 |
H24 |
320.0 |
149.7 |
| C28 |
C26 |
C24 |
H24A |
199.2 |
29.7 |
| C28 |
C26 |
C32 |
H32 |
180.7 |
180.3 |
| H28 |
C28 |
C29 |
H29 |
1.3 |
0.1 |