PDB Chemical Component D67
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D67
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.398 |
1.389 |
| C1 |
C6 |
1.392 |
1.381 |
| C1 |
H1 |
1.080 |
1.080 |
| C16 |
F1 |
1.319 |
1.399 |
| C7 |
N1 |
1.354 |
1.378 |
| N1 |
C2 |
1.354 |
1.397 |
| N1 |
HN1 |
1.000 |
0.970 |
| C2 |
C3 |
1.394 |
1.390 |
| C16 |
F2 |
1.325 |
1.400 |
| C11 |
N2 |
1.327 |
1.366 |
| N2 |
C7 |
1.342 |
1.366 |
| N2 |
N3 |
1.395 |
1.400 |
| C3 |
C4 |
1.388 |
1.380 |
| C3 |
H3 |
1.080 |
1.079 |
| F3 |
C16 |
1.316 |
1.399 |
| C12 |
N3 |
1.353 |
1.311 |
| C4 |
C5 |
1.392 |
1.383 |
| C4 |
H4 |
1.080 |
1.080 |
| C13 |
F4 |
1.315 |
1.398 |
| C11 |
N4 |
1.348 |
1.329 |
| N4 |
C12 |
1.355 |
1.328 |
| C6 |
C5 |
1.398 |
1.383 |
| C5 |
C16 |
1.502 |
1.507 |
| F5 |
C13 |
1.317 |
1.399 |
| N5 |
C9 |
1.351 |
1.316 |
| N5 |
C11 |
1.352 |
1.338 |
| C6 |
H6 |
1.080 |
1.080 |
| C8 |
C7 |
1.400 |
1.381 |
| C9 |
C8 |
1.398 |
1.393 |
| C8 |
H8 |
1.080 |
1.081 |
| C10 |
C9 |
1.502 |
1.507 |
| C10 |
H10 |
1.100 |
1.091 |
| C10 |
H10A |
1.100 |
1.090 |
| C10 |
H10B |
1.100 |
1.090 |
| C12 |
C13 |
1.502 |
1.507 |
| C13 |
C14 |
1.518 |
1.530 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.091 |
| C14 |
H14B |
1.100 |
1.089 |
Bond Angles for D67
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
119.7 |
119.9 |
| C2 |
C1 |
H1 |
120.1 |
120.1 |
| C6 |
C1 |
H1 |
120.2 |
120.0 |
| C1 |
C6 |
C5 |
119.9 |
120.1 |
| C1 |
C6 |
H6 |
120.1 |
120.0 |
| C7 |
N1 |
HN1 |
115.9 |
120.0 |
| C2 |
N1 |
HN1 |
115.9 |
120.0 |
| N1 |
C2 |
C3 |
116.9 |
120.1 |
| C2 |
C3 |
C4 |
120.3 |
119.9 |
| C2 |
C3 |
H3 |
119.9 |
120.0 |
| N3 |
N2 |
C7 |
125.7 |
133.4 |
| C4 |
C3 |
H3 |
119.8 |
120.1 |
| C3 |
C4 |
C5 |
119.8 |
120.1 |
| C3 |
C4 |
H4 |
120.1 |
119.9 |
| F3 |
C16 |
C5 |
108.4 |
109.5 |
| C5 |
C4 |
H4 |
120.1 |
120.0 |
| C4 |
C5 |
C16 |
119.0 |
119.9 |
| C11 |
N4 |
C12 |
103.8 |
109.7 |
| N4 |
C12 |
C13 |
121.2 |
125.2 |
| C6 |
C5 |
C16 |
120.7 |
119.9 |
| F5 |
C13 |
C12 |
109.7 |
109.5 |
| F5 |
C13 |
C14 |
110.5 |
109.4 |
| C9 |
N5 |
C11 |
117.8 |
121.2 |
| N5 |
C9 |
C8 |
120.1 |
120.4 |
| C9 |
C8 |
H8 |
120.2 |
120.5 |
| H10 |
C10 |
H10A |
109.5 |
109.4 |
| H10 |
C10 |
H10B |
109.5 |
109.5 |
| H10A |
C10 |
H10B |
109.5 |
109.4 |
| C12 |
C13 |
C14 |
109.2 |
109.5 |
| C13 |
C14 |
H14 |
109.5 |
109.5 |
| C13 |
C14 |
H14A |
109.5 |
109.5 |
| C13 |
C14 |
H14B |
109.5 |
109.5 |
| H14 |
C14 |
H14A |
109.5 |
109.4 |
| H14 |
C14 |
H14B |
109.4 |
109.5 |
| H14A |
C14 |
H14B |
109.4 |
109.5 |
Torsion Angles for D67
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
359.4 |
360.0 |
| C2 |
C1 |
C6 |
H6 |
179.4 |
179.7 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C1 |
C6 |
C5 |
C16 |
180.3 |
180.0 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.3 |
| H1 |
C1 |
C6 |
C5 |
179.3 |
180.2 |
| H1 |
C1 |
C6 |
H6 |
359.3 |
360.0 |
| C2 |
N1 |
C7 |
HN1 |
180.0 |
180.1 |
| N1 |
C2 |
C1 |
C6 |
179.5 |
180.1 |
| N1 |
C2 |
C1 |
H1 |
359.5 |
359.8 |
| C7 |
N1 |
C2 |
HN1 |
180.0 |
179.9 |
| N1 |
C2 |
C3 |
C4 |
180.4 |
180.0 |
| N1 |
C2 |
C3 |
H3 |
0.4 |
360.0 |
| HN1 |
N1 |
C2 |
C3 |
33.4 |
353.0 |
| C3 |
C2 |
C1 |
C6 |
0.9 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
181.0 |
179.8 |
| C3 |
C2 |
N1 |
HN1 |
33.4 |
353.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.7 |
360.0 |
| C2 |
C3 |
C4 |
H4 |
180.6 |
180.0 |
| N2 |
C7 |
N1 |
HN1 |
27.1 |
122.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C16 |
179.7 |
180.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
180.7 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
0.6 |
360.0 |
| C4 |
C5 |
C16 |
F3 |
88.9 |
90.0 |
| C6 |
C5 |
C16 |
F3 |
269.0 |
270.0 |
| C1 |
C6 |
C5 |
C4 |
0.3 |
360.0 |
| C5 |
C4 |
C3 |
H3 |
180.7 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| F3 |
C16 |
C5 |
C4 |
88.9 |
90.0 |
| C6 |
C5 |
C4 |
C16 |
179.9 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
0.6 |
360.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C16 |
359.8 |
360.0 |
| C11 |
N4 |
C12 |
C13 |
180.0 |
180.0 |
| F5 |
C13 |
C12 |
N4 |
52.3 |
240.1 |
| N4 |
C12 |
C13 |
C14 |
291.1 |
0.0 |
| C5 |
C6 |
C1 |
H1 |
179.3 |
180.2 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
| F3 |
C16 |
C5 |
C6 |
269.0 |
270.0 |
| C6 |
C5 |
C4 |
H4 |
179.7 |
180.0 |
| C4 |
C5 |
C6 |
C16 |
180.1 |
180.0 |
| C16 |
C5 |
C4 |
H4 |
359.8 |
360.0 |
| N4 |
C12 |
C13 |
F5 |
52.3 |
240.1 |
| C12 |
C13 |
F5 |
C14 |
239.5 |
120.0 |
| F5 |
C13 |
C14 |
H14 |
298.8 |
60.1 |
| F5 |
C13 |
C14 |
H14A |
58.8 |
180.0 |
| F5 |
C13 |
C14 |
H14B |
178.8 |
300.0 |
| N5 |
C9 |
C8 |
H8 |
179.3 |
180.1 |
| N5 |
C11 |
N4 |
C12 |
180.1 |
180.7 |
| C11 |
N5 |
C9 |
C8 |
0.2 |
359.6 |
| H6 |
C6 |
C1 |
H1 |
359.3 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.3 |
| H6 |
C6 |
C5 |
C16 |
0.3 |
0.3 |
| C8 |
C7 |
N1 |
HN1 |
208.5 |
301.9 |
| N5 |
C9 |
C8 |
C7 |
359.3 |
0.0 |
| C8 |
C9 |
N5 |
C11 |
0.2 |
359.6 |
| C10 |
C9 |
N5 |
C11 |
179.9 |
180.0 |
| C10 |
C9 |
C8 |
H8 |
359.6 |
359.7 |
| H10A |
C10 |
H10 |
H10B |
120.0 |
119.9 |
| H10 |
C10 |
H10A |
H10B |
240.0 |
240.0 |
| H10 |
C10 |
H10B |
H10A |
120.0 |
119.9 |
| F5 |
C13 |
C12 |
C14 |
121.2 |
240.0 |
| C12 |
C13 |
C14 |
H14 |
59.5 |
300.1 |
| C12 |
C13 |
C14 |
H14A |
179.5 |
60.0 |
| C12 |
C13 |
C14 |
H14B |
299.5 |
180.0 |
| F5 |
C13 |
C14 |
C12 |
239.3 |
120.0 |
| H14 |
C14 |
C13 |
H14A |
240.0 |
240.1 |
| H14 |
C14 |
C13 |
H14B |
120.0 |
120.1 |
| H14A |
C14 |
C13 |
H14B |
240.0 |
240.0 |
| C13 |
C14 |
H14 |
H14A |
120.1 |
120.0 |
| C13 |
C14 |
H14 |
H14B |
240.0 |
239.9 |
| H14A |
C14 |
H14 |
H14B |
119.9 |
120.0 |
| C13 |
C14 |
H14A |
H14 |
239.9 |
240.0 |
| C13 |
C14 |
H14A |
H14B |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.1 |
240.0 |
| C13 |
C14 |
H14B |
H14 |
120.0 |
120.1 |
| C13 |
C14 |
H14B |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
119.9 |