PDB Chemical Component D5Q

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D5Q

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C01	O02	1.403	1.429
O02	C03	1.401	1.360
C03	C04	1.385	1.388
C03	C10	1.384	1.386
C04	C05	1.391	1.382
C05	C06	1.385	1.385
C06	O07	1.406	1.360
C06	C09	1.387	1.397
O07	C08	1.402	1.429
C09	C10	1.383	1.391
C09	C11	1.530	1.485
C11	C12	1.381	1.366
C11	C16	1.363	1.408
C12	N13	1.346	1.349
N13	C14	1.451	1.465
N13	C15	1.346	1.377
C15	C16	1.373	1.367
C15	C17	1.536	1.466
C17	O18	1.183	1.218
C17	N19	1.464	1.348
N19	C20	1.466	1.393
C20	C21	1.392	1.387
C20	N25	1.316	1.325
C21	C22	1.395	1.400
C22	C23	1.389	1.403
C22	C26	1.535	1.474
C23	C24	1.391	1.377
C24	N25	1.327	1.321
C26	C27	1.372	1.381
C26	N30	1.314	1.384
C27	N28	1.315	1.346
C27	C33	1.526	1.481
N28	C29	1.338	1.313
C29	N30	1.340	1.361
C29	S31	1.817	1.762
S31	C32	1.816	1.810
C33	C34	1.384	1.395
C33	C39	1.385	1.395
C34	C35	1.387	1.380
C35	C36	1.385	1.385
C36	F37	1.366	1.352
C36	C38	1.384	1.385
C38	C39	1.390	1.379
C01	H012	1.100	1.089
C01	H011	1.100	1.090
C01	H013	1.100	1.090
C04	H041	1.080	1.080
C05	H051	1.080	1.080
C08	H081	1.100	1.090
C08	H083	1.099	1.090
C08	H082	1.100	1.090
C10	H101	1.080	1.080
C12	H121	1.081	1.080
C14	H143	1.100	1.089
C14	H141	1.100	1.090
C14	H142	1.100	1.089
C16	H161	1.080	1.081
N19	H191	1.000	0.971
C21	H211	1.080	1.080
C23	H231	1.080	1.080
C24	H241	1.080	1.079
N30	H301	1.000	0.970
C32	H323	1.100	1.089
C32	H322	1.100	1.090
C32	H321	1.100	1.091
C34	H341	1.080	1.079
C35	H351	1.080	1.080
C38	H381	1.080	1.080
C39	H391	1.080	1.080

Bond Angles for D5Q

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C01	O02	C03	115.3	117.0
O02	C01	H012	109.5	109.5
O02	C01	H011	109.5	109.5
O02	C01	H013	109.5	109.5
O02	C03	C04	120.8	119.9
O02	C03	C10	119.8	120.0
C04	C03	C10	119.4	120.1
C03	C04	C05	120.1	120.2
C03	C04	H041	120.0	119.9
C03	C10	C09	120.2	119.9
C03	C10	H101	119.9	120.0
C04	C05	C06	120.6	120.1
C05	C04	H041	119.9	119.9
C04	C05	H051	119.7	120.0
C05	C06	O07	122.2	120.0
C05	C06	C09	118.7	119.9
C06	C05	H051	119.7	120.0
O07	C06	C09	119.1	120.1
C06	O07	C08	120.3	117.0
C06	C09	C10	120.9	119.8
C06	C09	C11	121.5	120.1
O07	C08	H081	109.5	109.4
O07	C08	H083	109.5	109.4
O07	C08	H082	109.5	109.5
C10	C09	C11	117.6	120.1
C09	C10	H101	119.9	120.1
C09	C11	C12	128.6	126.3
C09	C11	C16	123.6	126.3
C12	C11	C16	107.8	107.4
C11	C12	N13	107.1	108.6
C11	C12	H121	126.4	125.7
C11	C16	C15	107.7	107.1
C11	C16	H161	126.1	126.5
C12	N13	C14	124.6	125.5
C12	N13	C15	109.8	109.0
N13	C12	H121	126.4	125.7
C14	N13	C15	125.6	125.6
N13	C14	H143	109.5	109.5
N13	C14	H141	109.5	109.4
N13	C14	H142	109.5	109.5
N13	C15	C16	107.6	107.9
N13	C15	C17	129.4	126.0
C16	C15	C17	123.0	126.1
C15	C16	H161	126.2	126.4
C15	C17	O18	120.5	120.0
C15	C17	N19	117.3	120.0
O18	C17	N19	122.1	119.9
C17	N19	C20	123.0	120.1
C17	N19	H191	118.5	119.9
N19	C20	C21	120.1	119.6
N19	C20	N25	119.0	119.6
C20	N19	H191	118.5	120.0
C21	C20	N25	120.8	120.8
C20	C21	C22	119.2	118.9
C20	C21	H211	120.4	120.6
C20	N25	C24	122.2	122.0
C21	C22	C23	117.8	118.2
C21	C22	C26	119.2	120.9
C22	C21	H211	120.4	120.6
C23	C22	C26	122.9	120.9
C22	C23	C24	120.0	119.1
C22	C23	H231	120.0	120.5
C22	C26	C27	130.2	126.8
C22	C26	N30	122.2	126.9
C23	C24	N25	119.9	121.0
C24	C23	H231	120.0	120.4
C23	C24	H241	120.1	119.5
N25	C24	H241	120.1	119.5
C27	C26	N30	107.6	106.3
C26	C27	N28	107.7	107.7
C26	C27	C33	129.6	126.2
C26	N30	C29	108.3	107.1
C26	N30	H301	125.9	126.4
N28	C27	C33	122.7	126.1
C27	N28	C29	108.3	109.7
C27	C33	C34	118.9	120.1
C27	C33	C39	121.0	120.1
N28	C29	N30	108.1	109.2
N28	C29	S31	126.3	125.4
N30	C29	S31	125.5	125.4
C29	N30	H301	125.8	126.4
C29	S31	C32	108.4	100.0
S31	C32	H323	109.5	109.5
S31	C32	H322	109.5	109.5
S31	C32	H321	109.4	109.4
C34	C33	C39	120.1	119.8
C33	C34	C35	120.0	119.9
C33	C34	H341	120.0	120.1
C33	C39	C38	119.8	119.9
C33	C39	H391	120.1	120.1
C34	C35	C36	120.0	120.1
C35	C34	H341	120.0	120.0
C34	C35	H351	120.0	119.9
C35	C36	F37	119.8	119.9
C35	C36	C38	120.0	120.2
C36	C35	H351	120.0	120.0
F37	C36	C38	120.2	119.9
C36	C38	C39	120.1	120.1
C36	C38	H381	120.0	120.0
C39	C38	H381	120.0	119.9
C38	C39	H391	120.1	120.1
H012	C01	H011	109.4	109.5
H012	C01	H013	109.5	109.5
H011	C01	H013	109.4	109.4
H081	C08	H083	109.5	109.5
H081	C08	H082	109.5	109.5
H083	C08	H082	109.5	109.5
H143	C14	H141	109.4	109.5
H143	C14	H142	109.5	109.5
H141	C14	H142	109.5	109.5
H322	C32	H323	109.4	109.5
H321	C32	H323	109.5	109.4
H321	C32	H322	109.5	109.5

Torsion Angles for D5Q

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C01	O02	C03	C04	117.9	0.0
C01	O02	C03	C10	297.5	179.7
H012	C01	O02	H011	240.0	240.0
H012	C01	O02	H013	120.1	120.0
H011	C01	O02	H013	240.0	240.1
C03	O02	C01	H012	180.0	300.0
C03	O02	C01	H011	300.0	60.0
C03	O02	C01	H013	60.0	180.0
C04	C03	O02	C10	180.4	180.4
O02	C03	C04	C05	179.8	180.0
O02	C03	C04	H041	359.8	359.9
O02	C03	C10	C09	179.5	179.7
O02	C03	C10	H101	359.5	0.1
O02	C03	C04	C10	179.6	179.6
C04	C03	C10	C09	359.1	359.4
C04	C03	C10	H101	179.1	179.7
C03	C04	C05	C06	359.9	0.0
C05	C04	C03	H041	180.0	180.1
C03	C04	C05	H051	179.9	180.0
O02	C03	C10	C04	180.4	180.4
C10	C03	C04	C05	0.2	0.3
C10	C03	C04	H041	180.2	180.3
C06	C09	C10	C03	1.5	0.6
C03	C10	C09	C11	179.5	180.3
C09	C10	C03	H101	180.0	179.7
C05	C04	C03	C10	0.2	0.3
C03	C04	C05	H041	180.0	179.9
C04	C05	C06	O07	179.3	180.0
C04	C05	C06	C09	0.8	359.9
C06	C05	C04	H051	180.0	180.1
C06	C05	C04	H041	179.9	180.1
C04	C05	C06	H051	180.0	179.9
O07	C06	C05	C09	178.5	180.1
C05	C06	O07	C08	22.1	360.0
C05	C06	C09	C10	358.5	359.8
C05	C06	C09	C11	180.6	180.0
C05	C06	O07	C09	181.5	179.9
O07	C06	C05	H051	359.3	0.0
O07	C06	C09	C10	179.9	179.7
O07	C06	C09	C11	2.0	360.0
C06	O07	C08	H081	180.0	180.0
C06	O07	C08	H083	300.0	300.0
C06	O07	C08	H082	60.0	60.0
C03	C10	C09	C06	1.5	0.6
C05	C06	C09	O07	178.6	180.1
C09	C06	C05	H051	180.8	180.0
C09	C06	O07	C08	200.6	180.1
C10	C09	C06	C11	177.9	179.7
C06	C09	C10	H101	181.5	180.2
C06	C09	C11	C12	296.1	130.0
C06	C09	C11	C16	117.1	309.7
C08	O07	C06	C09	200.6	180.1
H081	C08	O07	H083	240.0	240.0
H081	C08	O07	H082	120.0	120.0
H083	C08	O07	H082	240.0	240.0
C03	C10	C09	H101	180.0	180.3
C06	C09	C10	C11	182.0	180.3
C10	C09	C11	C12	118.1	310.3
C10	C09	C11	C16	299.1	129.9
C06	C09	C11	C10	178.0	179.7
C11	C09	C10	H101	359.5	360.0
C12	C11	C09	C16	179.0	180.4
C09	C11	C12	N13	180.4	180.0
C09	C11	C12	H121	0.4	359.9
C09	C11	C16	C15	179.3	179.9
C09	C11	C16	H161	359.3	0.0
C09	C11	C12	C16	180.9	179.7
C12	C11	C16	C15	0.2	359.5
C12	C11	C16	H161	180.2	179.7
C11	C12	N13	C14	180.1	180.0
C11	C12	N13	C15	0.6	359.9
N13	C12	C11	H121	180.0	180.1
C09	C11	C16	C12	179.1	180.3
C16	C11	C12	N13	359.5	0.3
C16	C11	C12	H121	179.5	180.2
N13	C15	C16	C11	0.2	0.4
C11	C16	C15	C17	179.4	180.2
C15	C16	C11	H161	180.0	179.8
N13	C12	C11	C16	359.5	0.3
C11	C12	N13	H121	180.0	179.9
C14	N13	C12	C15	179.5	180.1
C12	N13	C14	H143	180.0	87.1
C12	N13	C14	H141	300.0	207.1
C12	N13	C14	H142	60.0	327.1
C12	N13	C15	C16	359.5	359.8
C12	N13	C15	C17	180.4	180.0
C12	N13	C14	C15	180.6	179.9
C14	N13	C12	H121	0.1	0.1
C14	N13	C15	C16	180.0	179.7
C14	N13	C15	C17	0.9	359.9
H143	C14	N13	H141	240.0	240.0
H143	C14	N13	H142	120.0	120.0
H141	C14	N13	H142	240.0	240.0
C11	C16	C15	N13	0.2	0.4
C12	N13	C15	C14	179.5	180.1
C15	N13	C12	H121	180.6	180.0
C15	N13	C14	H143	359.4	267.2
C15	N13	C14	H141	119.4	27.2
C15	N13	C14	H142	239.4	147.2
C16	C15	N13	C17	179.1	179.8
N13	C15	C16	H161	180.2	180.2
N13	C15	C17	O18	29.1	5.5
N13	C15	C17	N19	208.2	185.5
C11	C16	C15	H161	180.0	180.2
N13	C15	C16	C17	180.9	180.2
C16	C15	C17	O18	210.1	185.8
C16	C15	C17	N19	29.3	5.7
N13	C15	C17	C16	178.9	179.8
C17	C15	C16	H161	359.4	0.0
O18	C17	C15	N19	180.9	180.0
C15	C17	N19	C20	181.1	186.9
C15	C17	N19	H191	1.1	6.8
C15	C17	O18	N19	179.1	180.0
O18	C17	N19	C20	0.2	6.8
O18	C17	N19	H191	180.2	186.8
C15	C17	N19	O18	180.9	180.0
C17	N19	C20	C21	30.4	338.2
C17	N19	C20	N25	208.4	158.0
C20	N19	C17	H191	180.0	180.0
C17	N19	C20	H191	180.0	180.0
C21	C20	N19	N25	182.0	180.2
N19	C20	C21	C22	179.7	180.0
N19	C20	C21	H211	359.7	360.0
N19	C20	N25	C24	180.8	179.7
N19	C20	C21	N25	178.0	179.8
C21	C20	N19	H191	210.4	158.3
C21	C20	N25	C24	358.8	359.5
C20	C21	C22	C23	358.4	0.1
C20	C21	C22	C26	180.3	180.0
C22	C21	C20	H211	180.0	180.0
N19	C20	N25	C21	182.0	180.2
N25	C20	N19	H191	28.4	338.0
N25	C20	C21	C22	1.7	0.2
N25	C20	C21	H211	181.7	180.2
C23	C24	N25	C20	0.6	0.5
C20	N25	C24	H241	180.6	180.3
C22	C21	C20	N25	1.7	0.2
C20	C21	C22	H211	180.0	180.0
C23	C22	C21	C26	178.1	180.1
C21	C22	C23	C24	1.1	359.9
C21	C22	C23	H231	181.1	180.0
C21	C22	C26	C27	208.8	135.0
C21	C22	C26	N30	29.6	314.7
C21	C22	C23	C26	182.0	179.9
C23	C22	C21	H211	178.4	180.1
C23	C22	C26	C27	30.8	315.0
C23	C22	C26	N30	211.5	134.6
C22	C23	C24	N25	359.4	359.8
C24	C23	C22	H231	180.0	180.0
C22	C23	C24	H241	179.4	180.0
C21	C22	C26	C23	178.0	180.1
C26	C22	C21	H211	0.3	0.0
C26	C22	C23	C24	179.1	180.0
C26	C22	C23	H231	359.1	0.0
C27	C26	C22	N30	179.3	180.3
C22	C26	C27	N28	180.4	180.0
C22	C26	C27	C33	1.0	359.9
C22	C26	N30	C29	179.5	179.9
C22	C26	N30	H301	359.5	0.0
C20	N25	C24	C23	0.6	0.5
C24	C23	C22	C26	179.1	180.0
C22	C23	C24	H231	180.0	180.0
N25	C24	C23	H241	180.0	179.8
N25	C24	C23	H231	179.4	179.8
C23	C24	N25	H241	180.0	180.2
C22	C26	C27	N30	180.6	179.7
C27	C26	N30	C29	0.1	359.6
C27	C26	N30	H301	180.1	179.7
N28	C27	C26	C33	179.5	180.0
C26	C27	N28	C29	0.2	360.0
C26	C27	C33	C34	229.0	145.0
C26	C27	C33	C39	50.6	324.7
C22	C26	N30	C27	179.4	180.3
N30	C26	C27	N28	359.8	0.3
N30	C26	C27	C33	180.3	180.2
N28	C29	N30	C26	0.1	0.4
C26	N30	C29	S31	179.8	180.2
C29	N30	C26	H301	180.0	179.9
N28	C27	C26	N30	359.8	0.3
C26	C27	N28	C33	180.5	180.0
N28	C27	C33	C34	49.6	325.0
N28	C27	C33	C39	231.2	144.7
C27	N28	C29	N30	359.8	359.7
C27	N28	C29	S31	180.0	180.0
C33	C27	C26	N30	180.3	180.2
C26	C27	C33	N28	179.4	180.0
C33	C27	N28	C29	179.8	180.0
C34	C33	C27	C39	178.4	180.3
C27	C33	C34	C35	180.7	180.0
C27	C33	C34	H341	0.7	359.9
C27	C33	C39	C38	179.3	179.8
C27	C33	C39	H391	359.3	0.0
C26	N30	C29	N28	0.1	0.4
C29	N28	C27	C33	179.8	180.0
N30	C29	N28	S31	179.8	179.7
N28	C29	N30	H301	180.1	180.3
N28	C29	S31	C32	134.1	0.0
C26	N30	C29	H301	180.0	180.1
N28	C29	N30	S31	180.2	180.3
N30	C29	S31	C32	314.4	180.3
N28	C29	S31	N30	179.7	179.7
S31	C29	N30	H301	359.8	0.0
C29	S31	C32	H323	180.0	180.0
C29	S31	C32	H322	300.0	60.0
C29	S31	C32	H321	60.0	300.0
H322	C32	S31	H323	120.0	239.9
H321	C32	S31	H323	240.0	119.9
H321	C32	S31	H322	120.0	240.0
C27	C33	C34	C39	181.6	179.7
C34	C33	C39	C38	0.8	359.4
C34	C33	C39	H391	180.9	179.7
C33	C34	C35	C36	0.4	359.9
C35	C34	C33	H341	180.0	180.1
C33	C34	C35	H351	180.4	180.0
C27	C33	C39	C34	178.4	180.3
C39	C33	C34	C35	359.2	0.3
C39	C33	C34	H341	179.2	180.3
C36	C38	C39	C33	359.6	0.5
C33	C39	C38	H381	179.6	180.3
C38	C39	C33	H391	180.0	179.7
C35	C34	C33	C39	359.2	0.3
C33	C34	C35	H341	180.0	179.9
C34	C35	C36	F37	180.1	180.0
C34	C35	C36	C38	0.1	360.0
C36	C35	C34	H351	180.0	180.0
C36	C35	C34	H341	180.4	180.0
C34	C35	C36	H351	180.0	180.0
F37	C36	C35	C38	180.0	180.0
C35	C36	C38	C39	359.9	359.8
C35	C36	C38	H381	179.9	180.0
C35	C36	F37	C38	180.0	180.0
F37	C36	C35	H351	0.1	359.9
F37	C36	C38	C39	179.9	179.8
F37	C36	C38	H381	359.9	360.0
C33	C39	C38	C36	359.6	0.5
C35	C36	C38	F37	180.0	180.0
C38	C36	C35	H351	180.1	179.9
C39	C38	C36	H381	180.0	179.8
C36	C38	C39	H391	179.6	180.2
C33	C39	C38	H391	180.0	180.3
C36	C38	C39	H381	180.0	180.2
H012	C01	O02	C03	180.0	300.0
O02	C01	H012	H011	120.0	120.0
O02	C01	H012	H013	240.0	240.0
H011	C01	H012	H013	120.0	119.9
H011	C01	O02	C03	300.0	60.0
O02	C01	H011	H012	240.0	239.9
O02	C01	H011	H013	120.0	120.0
H012	C01	H011	H013	240.0	240.0
H013	C01	O02	C03	60.0	180.0
O02	C01	H013	H012	120.1	120.1
O02	C01	H013	H011	240.0	240.0
H012	C01	H013	H011	120.0	120.0
H041	C04	C03	C10	180.2	180.3
C03	C04	H041	C05	180.0	180.1
H041	C04	C05	C06	179.9	180.1
H041	C04	C05	H051	359.9	0.0
C04	C05	H051	C06	180.0	180.1
H051	C05	C04	H041	359.9	0.0
H051	C05	C06	O07	359.3	0.0
H051	C05	C06	C09	180.8	180.0
O07	C08	H081	H083	120.0	119.9
O07	C08	H081	H082	240.0	240.0
H083	C08	H081	H082	120.0	120.1
O07	C08	H083	H081	240.0	240.1
O07	C08	H083	H082	120.0	120.0
H081	C08	H083	H082	240.0	239.9
O07	C08	H082	H081	120.0	120.0
O07	C08	H082	H083	240.0	240.0
H081	C08	H082	H083	120.0	120.0
C03	C10	H101	C09	180.0	179.7
H101	C10	C09	C11	359.5	360.0
H121	C12	C11	C16	179.5	180.2
C11	C12	H121	N13	180.0	180.1
H121	C12	N13	C14	0.1	0.1
H121	C12	N13	C15	180.6	180.0
H143	C14	N13	C15	359.4	267.2
N13	C14	H143	H141	120.0	120.0
N13	C14	H143	H142	240.0	240.0
H141	C14	H143	H142	120.0	120.0
H141	C14	N13	C15	119.4	27.2
N13	C14	H141	H143	240.0	240.0
N13	C14	H141	H142	120.0	120.0
H143	C14	H141	H142	240.0	240.0
H142	C14	N13	C15	239.4	147.2
N13	C14	H142	H143	120.0	120.0
N13	C14	H142	H141	240.0	240.0
H143	C14	H142	H141	120.0	120.0
C11	C16	H161	C15	180.0	179.8
H161	C16	C15	C17	359.4	0.0
C17	N19	H191	C20	180.0	180.0
H191	N19	C20	C21	210.4	158.3
H191	N19	C20	N25	28.4	338.0
H211	C21	C20	N25	181.7	180.2
C20	C21	H211	C22	180.0	180.0
H211	C21	C22	C23	178.4	180.1
H211	C21	C22	C26	0.3	0.0
H231	C23	C22	C26	359.1	0.0
C22	C23	H231	C24	180.0	180.0
H231	C23	C24	N25	179.4	179.8
H231	C23	C24	H241	359.4	359.9
C23	C24	H241	N25	180.0	179.8
H241	C24	C23	H231	359.4	359.9
C26	N30	H301	C29	180.0	179.9
H301	N30	C29	S31	359.8	0.0
S31	C32	H323	H322	120.0	240.0
S31	C32	H323	H321	240.0	119.9
H321	C32	H323	H322	240.0	120.0
S31	C32	H322	H323	240.0	120.0
S31	C32	H322	H321	120.0	240.0
H321	C32	H322	H323	120.0	240.0
S31	C32	H321	H323	120.0	240.0
S31	C32	H321	H322	240.0	120.0
H322	C32	H321	H323	240.0	120.1
H341	C34	C33	C39	179.2	180.3
C33	C34	H341	C35	180.0	180.1
H341	C34	C35	C36	180.4	180.0
H341	C34	C35	H351	0.4	0.1
C34	C35	H351	C36	180.0	180.0
H351	C35	C34	H341	0.4	0.1
H351	C35	C36	F37	0.1	359.9
H351	C35	C36	C38	180.1	179.9
C36	C38	H381	C39	180.0	179.8
H381	C38	C39	H391	359.6	0.0
C33	C39	H391	C38	180.0	179.7
H391	C39	C38	H381	359.6	0.0