PDB Chemical Component D5H
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D5H
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C18 |
C17 |
1.497 |
1.545 |
| C18 |
C14 |
1.500 |
1.511 |
| C17 |
C16 |
1.513 |
1.546 |
| O1 |
C13 |
1.178 |
1.216 |
| C14 |
C13 |
1.467 |
1.476 |
| C14 |
C15 |
1.315 |
1.340 |
| C13 |
N |
1.309 |
1.348 |
| C16 |
C15 |
1.498 |
1.511 |
| C11 |
C12 |
1.367 |
1.380 |
| C11 |
C10 |
1.370 |
1.390 |
| C12 |
C7 |
1.376 |
1.394 |
| C15 |
C19 |
1.447 |
1.475 |
| N |
C10 |
1.341 |
1.397 |
| C10 |
C9 |
1.451 |
1.392 |
| C |
O |
1.389 |
1.429 |
| C7 |
C5 |
1.498 |
1.484 |
| C7 |
C8 |
1.356 |
1.394 |
| C6 |
C5 |
1.371 |
1.392 |
| C6 |
C1 |
1.382 |
1.386 |
| C5 |
C4 |
1.354 |
1.394 |
| C1 |
O |
1.348 |
1.359 |
| C1 |
C2 |
1.364 |
1.387 |
| C4 |
C3 |
1.344 |
1.380 |
| C9 |
C8 |
1.358 |
1.381 |
| C9 |
F |
1.281 |
1.351 |
| C2 |
C3 |
1.355 |
1.383 |
| C19 |
O3 |
1.256 |
1.215 |
| C19 |
O2 |
1.164 |
1.347 |
| C8 |
H1 |
1.080 |
1.080 |
| C4 |
H2 |
1.080 |
1.079 |
| C3 |
H3 |
1.080 |
1.081 |
| C2 |
H4 |
1.080 |
1.079 |
| C |
H5 |
1.100 |
1.090 |
| C |
H6 |
1.100 |
1.090 |
| C |
H7 |
1.100 |
1.090 |
| C6 |
H8 |
1.080 |
1.080 |
| C12 |
H9 |
1.080 |
1.079 |
| C11 |
H10 |
1.080 |
1.080 |
| N |
H11 |
1.000 |
0.970 |
| O2 |
H12 |
0.950 |
0.966 |
| C18 |
H13 |
1.101 |
1.090 |
| C18 |
H14 |
1.100 |
1.090 |
| C17 |
H15 |
1.100 |
1.090 |
| C17 |
H16 |
1.100 |
1.090 |
| C16 |
H17 |
1.100 |
1.090 |
| C16 |
H18 |
1.101 |
1.090 |
Bond Angles for D5H
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C18 |
C17 |
C16 |
105.9 |
101.8 |
| C17 |
C18 |
H13 |
110.5 |
110.3 |
| C17 |
C18 |
H14 |
110.5 |
110.3 |
| C18 |
C17 |
H15 |
110.4 |
111.0 |
| C18 |
C17 |
H16 |
110.3 |
110.9 |
| C16 |
C17 |
H15 |
110.3 |
110.9 |
| C16 |
C17 |
H16 |
110.3 |
111.1 |
| C17 |
C16 |
H17 |
110.8 |
110.4 |
| C17 |
C16 |
H18 |
110.8 |
110.3 |
| C14 |
C15 |
C19 |
128.7 |
124.7 |
| C13 |
N |
H11 |
115.4 |
120.0 |
| C11 |
C12 |
H9 |
118.7 |
120.0 |
| C10 |
C11 |
H10 |
118.9 |
120.0 |
| C15 |
C19 |
O3 |
118.9 |
120.0 |
| C15 |
C19 |
O2 |
126.4 |
120.0 |
| C7 |
C5 |
C4 |
121.1 |
120.1 |
| C7 |
C8 |
H1 |
118.6 |
120.0 |
| C5 |
C4 |
C3 |
121.8 |
119.9 |
| C5 |
C4 |
H2 |
119.1 |
120.0 |
| C1 |
C2 |
H4 |
120.4 |
120.0 |
| C3 |
C4 |
H2 |
119.1 |
120.0 |
| C4 |
C3 |
H3 |
119.4 |
119.9 |
| C9 |
C8 |
H1 |
118.6 |
120.0 |
| C2 |
C3 |
H3 |
119.4 |
119.9 |
| O3 |
C19 |
O2 |
114.7 |
120.0 |
| C19 |
O2 |
H12 |
109.5 |
117.0 |
| H5 |
C |
H6 |
109.4 |
109.5 |
| H5 |
C |
H7 |
109.5 |
109.5 |
| H6 |
C |
H7 |
109.5 |
109.5 |
| H13 |
C18 |
H14 |
109.5 |
110.4 |
| H15 |
C17 |
H16 |
109.5 |
110.8 |
| H17 |
C16 |
H18 |
109.5 |
110.4 |
Torsion Angles for D5H
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C16 |
C17 |
C18 |
H15 |
240.6 |
241.9 |
| C16 |
C17 |
C18 |
H16 |
119.4 |
118.2 |
| C18 |
C17 |
C16 |
H17 |
134.2 |
215.8 |
| C18 |
C17 |
C16 |
H18 |
255.9 |
93.6 |
| H13 |
C18 |
C17 |
H14 |
238.7 |
122.2 |
| H15 |
C17 |
C18 |
H16 |
238.9 |
236.3 |
| C16 |
C17 |
C18 |
H13 |
105.9 |
266.4 |
| C16 |
C17 |
C18 |
H14 |
227.2 |
144.1 |
| C18 |
C17 |
C16 |
H15 |
119.5 |
118.1 |
| C18 |
C17 |
C16 |
H16 |
240.6 |
241.8 |
| H15 |
C17 |
C16 |
H16 |
121.1 |
123.7 |
| H17 |
C16 |
C17 |
H18 |
238.2 |
122.2 |
| O1 |
C13 |
N |
H11 |
181.2 |
184.0 |
| C14 |
C13 |
N |
H11 |
3.2 |
4.0 |
| C14 |
C15 |
C19 |
O3 |
172.1 |
355.0 |
| C14 |
C15 |
C19 |
O2 |
352.1 |
174.9 |
| C10 |
C11 |
C12 |
H9 |
178.6 |
179.8 |
| C12 |
C7 |
C8 |
H1 |
180.4 |
180.0 |
| O3 |
C19 |
C15 |
O2 |
180.0 |
180.0 |
| C15 |
C19 |
O2 |
H12 |
180.0 |
180.0 |
| N |
C10 |
C11 |
H10 |
0.1 |
359.8 |
| C10 |
C9 |
C8 |
H1 |
180.4 |
180.2 |
| C5 |
C7 |
C8 |
H1 |
359.2 |
0.1 |
| C7 |
C5 |
C4 |
C3 |
179.8 |
180.0 |
| C7 |
C5 |
C4 |
H2 |
359.8 |
360.0 |
| C9 |
C8 |
C7 |
H1 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H2 |
182.9 |
180.3 |
| C6 |
C1 |
C2 |
H4 |
180.3 |
179.7 |
| C3 |
C4 |
C5 |
H2 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
176.6 |
179.9 |
| O |
C1 |
C2 |
H4 |
358.2 |
0.0 |
| C1 |
C2 |
C3 |
H3 |
181.7 |
180.1 |
| C5 |
C4 |
C3 |
H2 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H1 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
H2 |
176.6 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C15 |
C19 |
O3 |
O2 |
180.0 |
180.0 |
| O3 |
C19 |
O2 |
H12 |
0.0 |
0.0 |
| C15 |
C19 |
O2 |
O3 |
180.0 |
180.0 |
| C5 |
C4 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C4 |
C3 |
H3 |
356.6 |
359.9 |
| H3 |
C3 |
C4 |
H2 |
356.6 |
359.9 |
| H4 |
C2 |
C3 |
H3 |
1.7 |
0.1 |
| H6 |
C |
H5 |
H7 |
120.0 |
120.1 |
| H5 |
C |
H6 |
H7 |
240.0 |
239.9 |
| H5 |
C |
H7 |
H6 |
120.0 |
120.1 |
| H10 |
C11 |
C12 |
H9 |
358.5 |
359.9 |
| H13 |
C18 |
C17 |
C16 |
105.9 |
266.4 |
| C17 |
C18 |
H13 |
H14 |
121.9 |
237.8 |
| H13 |
C18 |
C17 |
H15 |
225.3 |
24.4 |
| H13 |
C18 |
C17 |
H16 |
346.5 |
148.1 |
| H14 |
C18 |
C17 |
C16 |
227.2 |
144.1 |
| C17 |
C18 |
H14 |
H13 |
238.1 |
122.2 |
| H14 |
C18 |
C17 |
H15 |
346.6 |
262.2 |
| H14 |
C18 |
C17 |
H16 |
107.8 |
25.9 |
| C18 |
C17 |
H15 |
C16 |
243.3 |
247.6 |
| H15 |
C17 |
C18 |
H13 |
225.3 |
24.4 |
| H15 |
C17 |
C18 |
H14 |
346.6 |
262.2 |
| C18 |
C17 |
H15 |
H16 |
121.6 |
123.8 |
| C16 |
C17 |
H15 |
H16 |
238.4 |
236.1 |
| H15 |
C17 |
C16 |
H17 |
14.7 |
97.7 |
| H15 |
C17 |
C16 |
H18 |
136.5 |
335.4 |
| C18 |
C17 |
H16 |
C16 |
116.7 |
112.5 |
| H16 |
C17 |
C18 |
H13 |
346.5 |
148.1 |
| H16 |
C17 |
C18 |
H14 |
107.8 |
25.9 |
| C18 |
C17 |
H16 |
H15 |
238.3 |
236.2 |
| C16 |
C17 |
H16 |
H15 |
121.6 |
123.8 |
| H16 |
C17 |
C16 |
H17 |
253.6 |
334.0 |
| H16 |
C17 |
C16 |
H18 |
15.3 |
211.7 |
| H17 |
C16 |
C17 |
H15 |
14.7 |
97.7 |
| H17 |
C16 |
C17 |
H16 |
253.6 |
334.0 |
| C17 |
C16 |
H17 |
H18 |
122.6 |
237.8 |
| H18 |
C16 |
C17 |
H15 |
136.5 |
335.4 |
| H18 |
C16 |
C17 |
H16 |
15.3 |
211.7 |
| C17 |
C16 |
H18 |
H17 |
237.4 |
122.2 |