PDB Chemical Component D5C

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D5C

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
FBG CBD 1.335 1.399
FBE CBD 1.376 1.399
FBF CBD 1.380 1.400
CBD CBB 1.421 1.506
CBB CBA 1.398 1.383
CBB CBC 1.400 1.380
CBA CAZ 1.400 1.383
CBC CAX 1.402 1.394
CAZ CAY 1.392 1.381
CAX CAY 1.399 1.394
CAX CAU 1.405 1.482
CAT CAU 1.383 1.395
CAT CAS 1.387 1.377
CAU CAV 1.413 1.395
CAS CAR 1.398 1.397
CAV CAW 1.410 1.377
CAR CAW 1.394 1.398
CAR CAP 1.403 1.477
OAQ CAP 1.191 1.216
CAP NAO 1.298 1.348
NAO CAN 1.508 1.465
CAN CAL 1.558 1.530
CAL CAK 1.542 1.530
CAK CAJ 1.546 1.531
CAK NAM 1.461 1.469
CAJ CAD 1.403 1.507
CAC CAD 1.383 1.382
CAC CAB 1.391 1.384
FAI CAB 1.303 1.350
CAD CAE 1.377 1.384
CAB CAA 1.381 1.386
CAE FAG 1.220 1.351
CAE CAF 1.390 1.384
CAA CAF 1.396 1.383
CAA FAH 1.385 1.352
CBC H1 1.080 1.080
CBA H2 1.081 1.080
CAZ H3 1.080 1.080
CAY H4 1.080 1.080
CAV H5 1.080 1.080
CAW H6 1.080 1.080
CAT H7 1.079 1.081
CAS H8 1.080 1.080
NAO H9 1.000 0.970
CAN H10 1.100 1.089
CAN H11 1.100 1.090
CAL H12 1.100 1.090
CAL H13 1.100 1.090
CAK H14 1.100 1.089
NAM H15 1.000 1.009
NAM H16 1.000 1.009
CAJ H18 1.100 1.090
CAJ H19 1.100 1.090
CAF H20 1.080 1.080
CAC H21 1.080 1.080

Bond Angles for D5C

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
FBG CBD CBB 109.2 109.5
FBE CBD CBB 110.1 109.5
FBF CBD CBB 110.5 109.4
CBD CBB CBA 120.6 120.0
CBD CBB CBC 121.6 120.0
CBC CBB CBA 117.8 120.1
CBB CBA CAZ 121.2 120.3
CBB CBA H2 119.4 119.8
CBB CBC CAX 121.7 119.9
CBB CBC H1 119.2 120.1
CBA CAZ CAY 120.2 120.1
CAZ CBA H2 119.4 119.8
CBA CAZ H3 119.9 120.0
CBC CAX CAY 119.4 119.7
CBC CAX CAU 120.4 120.2
CAX CBC H1 119.2 120.0
CAY CAZ H3 119.9 119.9
CAZ CAY H4 120.2 120.0
CAX CAY H4 120.1 120.1
CAX CAU CAV 122.3 120.0
CAT CAS CAR 124.9 120.0
CAS CAT H7 120.9 120.0
CAT CAS H8 117.5 120.0
CAU CAV CAW 123.5 120.1
CAU CAV H5 118.3 120.0
CAS CAR CAP 113.1 120.0
CAR CAS H8 117.6 120.0
CAW CAV H5 118.3 120.0
CAV CAW H6 121.1 120.0
CAR CAW H6 121.0 120.0
CAR CAP NAO 131.5 120.0
OAQ CAP NAO 111.0 120.0
CAP NAO CAN 115.0 120.0
CAP NAO H9 122.5 120.0
NAO CAN CAL 111.8 109.4
CAN NAO H9 122.5 120.0
NAO CAN H10 108.9 109.4
NAO CAN H11 108.9 109.5
CAN CAL CAK 115.5 109.5
CAL CAN H10 108.9 109.5
CAL CAN H11 108.9 109.5
CAN CAL H12 108.0 109.5
CAN CAL H13 108.0 109.5
CAL CAK CAJ 111.7 109.5
CAL CAK NAM 109.3 109.5
CAK CAL H12 108.0 109.5
CAK CAL H13 107.9 109.5
CAL CAK H14 108.4 109.4
NAM CAK CAJ 109.5 109.5
CAK CAJ CAD 113.6 109.5
CAJ CAK H14 108.4 109.5
CAK CAJ H18 108.4 109.5
CAK CAJ H19 108.4 109.4
NAM CAK H14 109.5 109.5
CAK NAM H15 109.5 111.0
CAK NAM H16 109.5 111.0
CAJ CAD CAE 121.1 120.0
CAD CAJ H18 108.4 109.5
CAD CAJ H19 108.5 109.5
CAD CAE FAG 119.7 120.0
CAD CAE CAF 121.1 120.0
FAG CAE CAF 119.2 120.0
CAE CAF H20 120.0 120.0
CAA CAF H20 120.0 120.0
H10 CAN H11 109.5 109.5
H12 CAL H13 109.5 109.4
H15 NAM H16 109.5 111.0
H18 CAJ H19 109.5 109.5

Torsion Angles for D5C

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
FBE CBD FBG CBB 239.7 120.0
FBF CBD FBG CBB 120.8 240.0
FBG CBD CBB CBA 310.6 120.0
FBG CBD CBB CBC 130.8 300.3
FBG CBD FBE CBB 119.7 240.0
FBF CBD FBE CBB 238.6 120.0
FBE CBD CBB CBA 70.2 359.9
FBE CBD CBB CBC 250.4 180.3
FBG CBD FBF CBB 240.0 120.0
FBE CBD FBF CBB 121.1 240.0
FBF CBD CBB CBA 190.7 239.9
FBF CBD CBB CBC 10.9 60.3
CBC CBB CBD CBA 180.2 180.4
CBD CBB CBA CAZ 180.1 180.1
CBD CBB CBA H2 0.1 0.1
CBD CBB CBC CAX 179.5 180.0
CBD CBB CBC H1 359.5 359.9
CBD CBB CBA CBC 180.2 180.4
CBA CBB CBC CAX 359.7 0.3
CBA CBB CBC H1 179.7 180.3
CBB CBA CAZ CAY 0.1 0.0
CAZ CBA CBB H2 180.0 180.0
CBB CBA CAZ H3 180.1 180.0
CBD CBB CBC CBA 179.8 179.6
CBC CBB CBA CAZ 359.9 359.7
CBC CBB CBA H2 179.9 179.7
CBB CBC CAX CAY 0.7 359.9
CBB CBC CAX CAU 180.9 180.0
CAX CBC CBB H1 180.0 180.1
CBB CBA CAZ H2 180.0 180.0
CAY CAZ CBA H3 180.0 180.0
CBA CAZ CAY H4 180.3 180.0
CAX CBC CBB CBA 359.7 0.3
CBB CBC CAX H1 180.0 179.9
CBC CAX CAY H4 179.4 180.1
CBC CAX CAU CAV 131.2 180.0
CAY CAZ CBA H2 180.1 180.0
CBA CAZ CAY H3 180.0 180.0
CBC CAX CAY CAZ 359.4 359.8
CAX CAY CAZ H4 180.0 180.3
CBC CAX CAY CAU 180.2 180.0
CAY CAX CBC H1 180.7 180.0
CAX CAY CAZ H3 180.2 180.2
CAZ CAY CAX H4 180.0 179.7
CBC CAX CAU CAY 179.8 180.0
CAU CAX CBC H1 0.9 0.0
CAU CAX CAY H4 359.1 0.0
CAX CAU CAV CAW 180.3 180.0
CAX CAU CAV H5 0.3 0.0
CAT CAU CAV H5 179.1 180.3
CAT CAS CAR CAP 177.7 179.9
CAR CAS CAT H8 180.0 180.1
CAW CAV CAU H5 180.0 180.0
CAU CAV CAW H6 181.9 180.0
CAR CAS CAT H7 178.1 180.0
CAT CAS CAR H8 180.0 179.9
CAS CAR CAW H6 177.4 179.7
CAS CAR CAP NAO 175.1 180.0
CAU CAV CAW H5 180.0 180.0
CAR CAW CAV H6 180.0 180.0
CAR CAW CAV H5 181.9 180.0
CAV CAW CAR H6 180.0 180.0
CAP CAR CAS H8 357.7 360.0
CAP CAR CAW H6 3.4 0.1
OAQ CAP CAR NAO 173.6 180.1
CAR CAP NAO CAN 175.3 180.1
CAR CAP NAO H9 355.3 0.0
CAR CAP OAQ NAO 185.1 179.9
OAQ CAP NAO CAN 1.3 360.0
OAQ CAP NAO H9 181.3 179.9
CAP NAO CAN CAL 271.2 180.0
CAN NAO CAP H9 180.0 180.1
CAP NAO CAN H10 31.5 300.0
CAP NAO CAN H11 150.9 60.0
CAP NAO CAN H9 180.0 179.9
NAO CAN CAL CAK 189.4 180.0
CAL CAN NAO H10 239.7 240.0
CAL CAN NAO H11 120.3 120.0
NAO CAN CAL H12 310.3 300.0
NAO CAN CAL H13 68.5 60.0
H10 CAN NAO H11 240.7 240.0
CAL CAN NAO H9 91.2 0.1
NAO CAN CAL H10 120.3 119.9
NAO CAN CAL H11 239.6 240.0
CAN CAL CAK CAJ 58.1 175.0
CAN CAL CAK NAM 179.5 295.0
CAK CAL CAN H12 239.1 240.0
CAK CAL CAN H13 120.9 120.0
CAN CAL CAK H14 298.8 55.0
H10 CAN CAL H11 119.3 120.1
H12 CAL CAN H13 241.8 240.0
CAK CAL CAN H10 69.1 60.0
CAK CAL CAN H11 309.8 299.9
CAN CAL CAK H12 120.9 120.0
CAN CAL CAK H13 239.1 240.0
NAM CAK CAL CAJ 121.4 120.0
CAL CAK CAJ CAD 175.2 185.0
CAJ CAK CAL H14 119.3 120.0
CAL CAK CAJ H18 295.8 305.0
CAL CAK CAJ H19 54.6 65.0
NAM CAK CAL H14 240.7 240.0
CAL CAK NAM H15 180.0 176.1
CAL CAK NAM H16 300.0 300.0
H12 CAL CAK H13 118.2 120.0
CAL CAK CAJ NAM 121.2 120.0
CAJ CAK CAL H12 297.2 55.0
CAJ CAK CAL H13 179.0 295.0
CAL CAK CAJ H14 240.7 240.1
NAM CAK CAJ H14 119.4 120.0
CAJ CAK NAM H15 302.6 296.1
CAJ CAK NAM H16 62.6 60.0
CAK CAJ CAD CAE 256.1 85.0
CAD CAJ CAK H18 239.4 240.0
CAD CAJ CAK H19 120.6 120.0
H18 CAJ CAK H19 241.2 240.0
CAL CAK NAM CAJ 237.4 240.0
NAM CAK CAL H12 58.6 175.0
NAM CAK CAL H13 300.3 55.0
CAL CAK NAM H14 118.6 120.0
NAM CAK CAJ CAD 54.0 65.0
CAJ CAK NAM H14 241.3 240.0
NAM CAK CAJ H18 174.6 185.0
NAM CAK CAJ H19 293.4 305.0
H15 NAM CAK H16 240.0 236.1
CAD CAJ CAK H14 294.5 304.9
CAK CAJ CAD H18 120.6 120.0
CAK CAJ CAD H19 239.4 240.0
CAJ CAD CAE FAG 1.1 359.9
CAJ CAD CAE CAF 179.8 180.0
H18 CAJ CAD H19 118.8 120.0
CAC CAD CAJ H18 316.2 144.8
CAC CAD CAJ H19 197.4 24.7
CAE CAD CAJ H18 135.5 325.0
CAE CAD CAJ H19 16.7 205.0
FAG CAE CAD CAF 181.3 180.0
CAD CAE CAF H20 180.2 180.0
CAB CAA CAF H20 180.0 180.0
CAD CAE FAG CAF 178.7 180.0
FAG CAE CAF H20 358.9 0.0
CAD CAE CAF FAG 181.3 180.0
CAA CAF CAE H20 180.0 180.0
CAE CAF CAA H20 180.0 180.0
FAH CAA CAF H20 0.7 0.0
H1 CBC CBB CBA 179.7 180.3
CBB CBC H1 CAX 180.0 180.1
H1 CBC CAX CAY 180.7 180.0
H1 CBC CAX CAU 0.9 0.0
CBB CBA H2 CAZ 180.0 180.0
H2 CBA CAZ CAY 180.1 180.0
H2 CBA CAZ H3 0.1 360.0
CBA CAZ H3 CAY 180.0 180.0
H3 CAZ CBA H2 0.1 360.0
H3 CAZ CAY H4 0.2 360.0
H4 CAY CAZ H3 0.2 360.0
CAU CAV H5 CAW 180.0 180.0
H5 CAV CAW H6 1.9 0.0
H6 CAW CAV H5 1.9 0.0
H7 CAT CAS CAR 178.1 180.0
H7 CAT CAS H8 358.1 359.9
CAT CAS H8 CAR 180.0 180.1
H8 CAS CAT H7 358.1 359.9
H8 CAS CAR CAP 357.7 360.0
CAP NAO H9 CAN 180.0 180.1
H9 NAO CAN CAL 91.2 0.1
H9 NAO CAN H10 211.5 120.0
H9 NAO CAN H11 330.8 240.1
NAO CAN H10 CAL 237.9 240.1
H10 CAN NAO H9 211.5 120.0
NAO CAN H10 H11 119.0 120.0
H10 CAN CAL CAK 69.1 60.0
CAL CAN H10 H11 241.1 239.9
H10 CAN CAL H12 190.0 180.0
H10 CAN CAL H13 308.2 300.0
NAO CAN H11 CAL 122.1 120.0
H11 CAN NAO H9 330.8 240.1
NAO CAN H11 H10 241.0 240.0
H11 CAN CAL CAK 309.8 299.9
CAL CAN H11 H10 118.9 120.0
H11 CAN CAL H12 70.7 59.9
H11 CAN CAL H13 188.9 179.9
CAN CAL H12 CAK 234.5 240.0
H12 CAL CAN H10 190.0 180.0
H12 CAL CAN H11 70.7 59.9
CAN CAL H12 H13 117.3 120.0
H12 CAL CAK CAJ 297.2 55.0
H12 CAL CAK NAM 58.6 175.0
CAK CAL H12 H13 242.8 240.0
H12 CAL CAK H14 177.9 295.0
CAN CAL H13 CAK 125.5 120.0
H13 CAL CAN H10 308.2 300.0
H13 CAL CAN H11 188.9 179.9
CAN CAL H13 H12 242.7 240.0
H13 CAL CAK CAJ 179.0 295.0
H13 CAL CAK NAM 300.3 55.0
CAK CAL H13 H12 117.3 120.0
H13 CAL CAK H14 59.7 175.0
CAL CAK H14 CAJ 121.4 120.0
CAL CAK H14 NAM 240.8 240.0
H14 CAK CAL H12 177.9 295.0
H14 CAK CAL H13 59.7 175.0
NAM CAK H14 CAJ 240.6 240.0
H14 CAK CAJ CAD 294.5 304.9
H14 CAK CAJ H18 55.1 65.0
H14 CAK CAJ H19 173.9 184.9
H14 CAK NAM H15 61.3 56.1
H14 CAK NAM H16 181.4 180.0
H15 NAM CAK CAJ 302.6 296.1
H15 NAM CAK H14 61.3 56.1
CAK NAM H15 H16 120.0 123.9
H16 NAM CAK CAJ 62.6 60.0
H16 NAM CAK H14 181.4 180.0
CAK NAM H16 H15 239.9 236.1
CAK CAJ H18 CAD 236.2 240.0
H18 CAJ CAK H14 55.1 65.0
CAK CAJ H18 H19 118.1 120.0
H18 CAJ CAD CAE 135.5 325.0
CAD CAJ H18 H19 241.9 240.0
CAK CAJ H19 CAD 123.8 120.0
H19 CAJ CAK H14 173.9 184.9
CAK CAJ H19 H18 241.9 240.0
H19 CAJ CAD CAE 16.7 205.0
CAD CAJ H19 H18 118.1 120.0