PDB Chemical Component D55

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D55

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C3	1.506	1.506
C3	O8	1.444	1.444
C5	C6	1.510	1.510
C5	O3	1.458	1.458
C7	C8	1.390	1.390
C7	C31	1.391	1.391
C7	O3	1.374	1.374
C8	C9	1.381	1.381
C9	C11	1.391	1.391
C11	C12	1.406	1.406
C11	O8	1.372	1.372
C12	N13	1.413	1.413
C12	C31	1.389	1.389
N13	C14	1.345	1.345
C14	O15	1.206	1.206
C14	C16	1.503	1.503
C16	C17	1.391	1.391
C16	C30	1.388	1.388
C17	C18	1.391	1.391
C18	C19	1.507	1.507
C18	C20	1.408	1.408
C20	O21	1.374	1.374
C20	C28	1.406	1.406
O21	C22	1.444	1.444
C22	C23	1.517	1.517
C23	N24	1.487	1.487
C28	C29	1.507	1.507
C28	C30	1.387	1.387
C2	H2C1	1.100	1.100
C2	H2C2	1.100	1.099
C2	H2C3	1.100	1.100
C3	H3C1	1.100	1.100
C3	H3C2	1.100	1.100
C5	H5C1	1.100	1.100
C5	H5C2	1.100	1.100
C6	H6C1	1.100	1.099
C6	H6C2	1.100	1.100
C6	H6C3	1.100	1.100
C8	H8	1.080	1.080
C31	H31	1.080	1.080
C9	H9	1.079	1.079
N13	H13	1.000	1.000
C17	H17	1.080	1.080
C30	H30	1.080	1.080
C19	H191	1.100	1.100
C19	H192	1.100	1.100
C19	H193	1.100	1.100
C22	H221	1.100	1.101
C22	H222	1.100	1.100
C23	H231	1.100	1.100
C23	H232	1.100	1.100
N24	H241	1.000	1.000
N24	H242	1.000	1.000
C29	H291	1.100	1.100
C29	H292	1.100	1.100
C29	H293	1.100	1.100

Bond Angles for D55

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C3	O8	108.9	108.9
C2	C3	H3C1	109.7	109.7
C2	C3	H3C2	109.8	109.8
O8	C3	H3C1	109.7	109.7
O8	C3	H3C2	109.8	109.8
C6	C5	O3	109.0	109.0
C6	C5	H5C1	109.7	109.7
C6	C5	H5C2	109.8	109.8
C5	C6	H6C1	109.5	109.5
C5	C6	H6C2	109.4	109.4
C5	C6	H6C3	109.5	109.5
C5	O3	C7	117.9	117.9
O3	C5	H5C1	109.6	109.6
O3	C5	H5C2	109.7	109.7
C7	C8	H8	119.7	119.7
C31	C7	O3	121.5	121.5
C7	C31	H31	119.4	119.4
C8	C9	C11	120.6	120.6
C8	C9	H9	119.7	119.7
C9	C11	C12	119.4	119.4
C9	C11	O8	125.3	125.3
C11	C9	H9	119.7	119.7
C12	N13	C14	126.1	126.1
C12	N13	H13	117.0	117.0
C12	C31	H31	119.4	119.4
N13	C14	O15	121.8	121.8
N13	C14	C16	116.8	116.8
C14	N13	H13	117.0	117.0
O15	C14	C16	121.4	121.4
C14	C16	C17	120.9	120.9
C14	C16	C30	120.1	120.1
C17	C16	C30	119.0	119.0
C16	C17	C18	121.5	121.5
C16	C17	H17	119.2	119.2
C16	C30	C28	121.4	121.4
C16	C30	H30	119.3	119.3
C17	C18	C19	120.5	120.5
C17	C18	C20	118.6	118.6
C18	C17	H17	119.2	119.2
C19	C18	C20	120.9	120.9
C18	C19	H191	109.5	109.5
C18	C19	H192	109.5	109.5
C18	C19	H193	109.4	109.4
C18	C20	O21	121.7	121.7
C18	C20	C28	120.4	120.4
O21	C20	C28	118.0	118.0
C20	O21	C22	117.7	117.7
C20	C28	C29	120.3	120.3
C20	C28	C30	119.1	119.1
O21	C22	C23	108.3	108.3
O21	C22	H221	109.9	109.9
O21	C22	H222	110.1	110.2
C22	C23	N24	112.6	112.6
C23	C22	H221	109.8	109.9
C23	C22	H222	110.1	110.1
C22	C23	H231	108.5	108.5
C22	C23	H232	107.7	107.7
N24	C23	H231	108.5	108.5
N24	C23	H232	107.8	107.8
C23	N24	H241	109.5	109.5
C23	N24	H242	109.5	109.5
C29	C28	C30	120.6	120.6
C28	C29	H291	109.5	109.5
C28	C29	H292	109.4	109.5
C28	C29	H293	109.5	109.5
C28	C30	H30	119.3	119.3
H2C1	C2	H2C2	109.5	109.4
H2C1	C2	H2C3	109.5	109.5
H2C2	C2	H2C3	109.4	109.5
H3C1	C3	H3C2	109.0	109.0
H5C1	C5	H5C2	109.1	109.1
H6C1	C6	H6C2	109.5	109.5
H6C1	C6	H6C3	109.4	109.4
H6C2	C6	H6C3	109.5	109.5
H191	C19	H192	109.5	109.5
H191	C19	H193	109.4	109.4
H192	C19	H193	109.5	109.5
H221	C22	H222	108.6	108.5
H231	C23	H232	111.9	111.9
H241	N24	H242	109.5	109.5
H291	C29	H292	109.5	109.5
H291	C29	H293	109.5	109.5
H292	C29	H293	109.5	109.5

Torsion Angles for D55

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O8	C3	C2	H3C1	240.0	240.0
O8	C3	C2	H3C2	120.2	120.2
H3C1	C3	C2	H3C2	240.3	240.3
C2	C3	O8	H3C1	120.0	120.0
C2	C3	O8	H3C2	239.7	239.7
C9	C11	O8	C3	322.7	322.7
H3C1	C3	O8	H3C2	119.7	119.7
C6	C5	O3	C7	160.7	160.7
O3	C5	C6	H5C1	240.0	240.0
O3	C5	C6	H5C2	120.2	120.2
H5C1	C5	C6	H5C2	240.2	240.2
H6C1	C6	C5	H6C2	240.0	240.0
H6C1	C6	C5	H6C3	120.0	120.0
H6C2	C6	C5	H6C3	240.0	240.0
C6	C5	O3	H5C1	120.0	120.0
C6	C5	O3	H5C2	239.8	239.8
O3	C5	C6	H6C1	308.2	308.2
O3	C5	C6	H6C2	68.2	68.2
O3	C5	C6	H6C3	188.2	188.2
C31	C7	O3	C5	11.5	11.5
H5C1	C5	O3	H5C2	119.8	119.8
C5	O3	C7	C8	191.0	191.0
C7	C8	C9	C11	360.0	360.0
C7	C8	C9	H9	180.0	180.0
C5	O3	C7	C31	11.5	11.5
C31	C7	C8	H8	179.1	179.1
C12	C31	C7	H31	180.0	180.0
C7	O3	C5	H5C1	40.6	40.6
C7	O3	C5	H5C2	280.9	280.9
O3	C7	C8	H8	359.6	359.6
O3	C7	C31	H31	0.7	0.7
C8	C9	C11	C12	0.6	0.6
C8	C9	C11	O8	179.2	179.2
C11	C9	C8	H9	180.0	180.0
C8	C9	C11	H9	180.0	180.0
C9	C11	C12	O8	178.7	178.7
C12	C11	C9	H9	180.6	180.6
C11	C12	N13	H13	64.7	64.7
C11	C12	C31	H31	179.4	179.4
C11	O8	C3	H3C1	43.3	43.3
C11	O8	C3	H3C2	283.6	283.6
C9	C11	O8	C12	181.4	181.4
O8	C11	C9	H9	359.2	359.2
C9	C11	C12	N13	179.6	179.6
N13	C12	C31	H31	359.5	359.5
C12	N13	C14	O15	359.5	359.5
C12	N13	C14	C16	180.3	180.3
C14	N13	C12	H13	180.0	180.0
C12	C31	C7	O3	180.7	180.7
C7	C31	C12	H31	180.0	180.0
C9	C11	C12	C31	359.7	359.7
C12	N13	C14	H13	180.0	180.0
O15	C14	N13	C16	179.2	179.2
N13	C14	C16	C17	225.0	225.0
N13	C14	C16	C30	45.6	45.6
N13	C14	O15	C16	180.8	180.8
O15	C14	N13	H13	179.6	179.6
O15	C14	C16	C17	45.8	45.8
O15	C14	C16	C30	226.4	226.4
N13	C14	C16	O15	179.2	179.2
C16	C14	N13	H13	0.4	0.4
C17	C16	C14	C30	179.5	179.5
C14	C16	C17	C18	180.2	180.2
C14	C16	C17	H17	0.3	0.3
C14	C16	C30	C28	179.7	179.7
C14	C16	C30	H30	359.7	359.7
C14	C16	C17	C30	180.5	180.5
C17	C16	C30	C28	0.1	0.1
C17	C16	C30	H30	180.2	180.2
C16	C17	C18	C19	180.0	180.0
C16	C17	C18	C20	0.1	0.1
C18	C17	C16	H17	180.0	180.0
C14	C16	C30	C17	179.5	179.5
C30	C16	C17	C18	359.7	359.7
C30	C16	C17	H17	179.8	179.8
C20	C28	C30	C16	0.1	0.1
C29	C28	C30	C16	179.8	179.8
C28	C30	C16	H30	180.0	180.0
C18	C17	C16	C30	359.7	359.7
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	C20	179.8	179.8
C17	C18	C19	H191	280.5	280.5
C17	C18	C19	H192	40.6	40.6
C17	C18	C19	H193	160.6	160.6
C17	C18	C20	O21	179.5	179.5
C17	C18	C20	C28	0.1	0.1
C17	C18	C19	C20	180.2	180.2
C19	C18	C17	H17	360.0	360.0
C19	C18	C20	O21	359.7	359.7
C19	C18	C20	C28	180.3	180.3
H191	C19	C18	H192	240.0	240.0
H191	C19	C18	H193	120.0	120.0
H192	C19	C18	H193	240.0	240.0
C17	C18	C20	C19	179.8	179.8
C20	C18	C17	H17	180.1	180.1
C20	C18	C19	H191	100.4	100.4
C20	C18	C19	H192	220.4	220.4
C20	C18	C19	H193	340.4	340.4
O21	C20	C18	C28	179.4	179.4
C18	C20	O21	C22	83.4	83.4
C18	C20	C28	C29	180.0	180.0
C18	C20	C28	C30	359.8	359.8
C18	C20	O21	C28	180.6	180.6
O21	C20	C28	C29	0.6	0.6
O21	C20	C28	C30	180.4	180.4
C20	O21	C22	C23	159.3	159.3
C20	O21	C22	H221	279.3	279.3
C20	O21	C22	H222	38.8	38.8
C16	C30	C28	C20	0.1	0.1
C18	C20	C28	O21	179.4	179.4
C28	C20	O21	C22	262.8	262.8
C29	C28	C20	C30	180.2	180.2
C20	C28	C29	H291	303.0	303.0
C20	C28	C29	H292	63.0	63.0
C20	C28	C29	H293	183.0	183.0
C20	C28	C30	H30	180.0	180.0
C22	O21	C20	C28	262.8	262.8
O21	C22	C23	N24	77.9	77.9
C23	C22	O21	H221	240.0	240.0
C23	C22	O21	H222	120.5	120.5
O21	C22	C23	H231	197.9	197.9
O21	C22	C23	H232	319.3	319.3
H221	C22	O21	H222	240.4	240.5
O21	C22	C23	H221	120.0	120.0
O21	C22	C23	H222	239.5	239.5
N24	C23	C22	H231	240.0	240.0
N24	C23	C22	H232	118.7	118.7
C22	C23	N24	H241	283.0	283.0
C22	C23	N24	H242	43.0	43.0
H221	C22	C23	H222	119.5	119.5
H231	C23	C22	H232	238.7	238.7
N24	C23	C22	H221	317.9	317.9
N24	C23	C22	H222	198.4	198.4
C22	C23	N24	H231	120.0	120.0
C22	C23	N24	H232	241.4	241.4
H231	C23	N24	H232	121.3	121.3
H241	N24	C23	H242	240.0	240.0
C16	C30	C28	C29	179.8	179.8
C20	C28	C29	C30	179.8	179.8
C29	C28	C30	H30	359.8	359.8
H291	C29	C28	H292	240.0	240.0
H291	C29	C28	H293	120.0	120.0
H292	C29	C28	H293	240.0	240.0
C16	C30	C28	H30	180.0	180.0
C20	C28	C30	C29	180.2	180.2
C30	C28	C29	H291	123.3	123.2
C30	C28	C29	H292	243.3	243.2
C30	C28	C29	H293	3.2	3.2
H2C1	C2	C3	O8	96.3	96.3
H2C1	C2	C3	H3C1	216.3	216.3
H2C1	C2	C3	H3C2	336.1	336.1
H2C2	C2	H2C1	H2C3	120.0	120.0
H2C2	C2	C3	O8	216.3	216.3
H2C2	C2	C3	H3C1	336.3	336.3
H2C2	C2	C3	H3C2	96.1	96.0
H2C1	C2	H2C2	H2C3	240.0	240.0
H2C3	C2	C3	O8	336.3	336.3
H2C3	C2	C3	H3C1	96.3	96.3
H2C3	C2	C3	H3C2	216.0	216.1
H2C1	C2	H2C3	H2C2	120.0	120.0
C2	C3	H3C1	O8	240.5	240.5
C2	C3	H3C1	H3C2	120.2	120.2
O8	C3	H3C1	H3C2	239.8	239.8
C2	C3	H3C2	O8	119.7	119.7
C2	C3	H3C2	H3C1	239.9	239.9
O8	C3	H3C2	H3C1	120.1	120.1
C6	C5	H5C1	O3	240.4	240.4
C6	C5	H5C1	H5C2	120.2	120.2
H5C1	C5	C6	H6C1	68.2	68.2
H5C1	C5	C6	H6C2	188.2	188.2
H5C1	C5	C6	H6C3	308.2	308.2
H5C1	C5	O3	C7	40.6	40.6
O3	C5	H5C1	H5C2	239.8	239.8
C6	C5	H5C2	O3	119.7	119.7
C6	C5	H5C2	H5C1	239.8	239.8
H5C2	C5	C6	H6C1	188.0	188.0
H5C2	C5	C6	H6C2	308.0	308.0
H5C2	C5	C6	H6C3	68.0	68.0
H5C2	C5	O3	C7	280.9	280.9
O3	C5	H5C2	H5C1	120.1	120.1
H6C1	C6	C5	O3	308.2	308.2
H6C1	C6	C5	H5C1	68.2	68.2
H6C1	C6	C5	H5C2	188.0	188.0
C5	C6	H6C1	H6C2	120.0	120.0
C5	C6	H6C1	H6C3	240.0	240.0
H6C2	C6	H6C1	H6C3	120.0	120.0
H6C2	C6	C5	O3	68.2	68.2
H6C2	C6	C5	H5C1	188.2	188.2
H6C2	C6	C5	H5C2	308.0	308.0
C5	C6	H6C2	H6C1	240.0	240.0
C5	C6	H6C2	H6C3	120.0	120.0
H6C1	C6	H6C2	H6C3	240.0	240.0
H6C3	C6	C5	O3	188.2	188.2
H6C3	C6	C5	H5C1	308.2	308.2
H6C3	C6	C5	H5C2	68.0	68.0
C5	C6	H6C3	H6C1	120.0	120.0
C5	C6	H6C3	H6C2	240.0	240.0
H6C1	C6	H6C3	H6C2	120.0	120.0
H8	C8	C9	C11	180.0	180.0
H8	C8	C9	H9	360.0	360.0
H31	C31	C7	O3	0.7	0.7
C8	C9	H9	C11	180.0	180.0
H9	C9	C11	C12	180.6	180.6
H9	C9	C11	O8	359.2	359.2
C12	N13	H13	C14	180.0	180.0
H13	N13	C14	O15	179.6	179.6
H13	N13	C14	C16	0.4	0.4
H17	C17	C16	C30	179.8	179.8
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C19	360.0	360.0
H17	C17	C18	C20	180.1	180.1
C16	C30	H30	C28	180.0	180.0
H191	C19	C18	C20	100.4	100.4
C18	C19	H191	H192	120.0	120.0
C18	C19	H191	H193	240.0	240.0
H192	C19	H191	H193	120.0	120.0
H192	C19	C18	C20	220.4	220.4
C18	C19	H192	H191	240.0	240.0
C18	C19	H192	H193	120.0	120.0
H191	C19	H192	H193	240.0	240.0
H193	C19	C18	C20	340.4	340.4
C18	C19	H193	H191	120.0	120.0
C18	C19	H193	H192	240.0	240.0
H191	C19	H193	H192	120.0	120.0
O21	C22	H221	C23	241.0	241.0
O21	C22	H221	H222	120.5	120.5
H221	C22	C23	N24	317.9	317.9
C23	C22	H221	H222	239.5	239.5
H221	C22	C23	H231	77.9	77.9
H221	C22	C23	H232	199.3	199.3
O21	C22	H222	C23	119.3	119.4
O21	C22	H222	H221	239.6	239.7
H222	C22	C23	N24	198.4	198.4
C23	C22	H222	H221	120.3	120.3
H222	C22	C23	H231	318.4	318.5
H222	C22	C23	H232	79.7	79.8
C22	C23	H231	N24	237.4	237.4
H231	C23	C22	H221	77.9	77.9
H231	C23	C22	H222	318.4	318.5
C22	C23	H231	H232	118.7	118.7
N24	C23	H231	H232	241.2	241.2
H231	C23	N24	H241	162.9	162.9
H231	C23	N24	H242	282.9	282.9
C22	C23	H232	N24	121.7	121.7
H232	C23	C22	H221	199.3	199.3
H232	C23	C22	H222	79.7	79.8
C22	C23	H232	H231	240.9	240.9
N24	C23	H232	H231	119.2	119.2
H232	C23	N24	H241	41.6	41.6
H232	C23	N24	H242	161.6	161.6
H241	N24	C23	H231	162.9	162.9
H241	N24	C23	H232	41.6	41.6
C23	N24	H241	H242	120.0	120.0
H242	N24	C23	H231	282.9	282.9
H242	N24	C23	H232	161.6	161.6
C23	N24	H242	H241	240.0	240.0
H291	C29	C28	C30	123.3	123.2
C28	C29	H291	H292	120.0	120.0
C28	C29	H291	H293	240.0	240.0
H292	C29	H291	H293	120.0	120.0
H292	C29	C28	C30	243.3	243.2
C28	C29	H292	H291	240.0	240.0
C28	C29	H292	H293	120.0	120.0
H291	C29	H292	H293	240.0	240.0
H293	C29	C28	C30	3.2	3.2
C28	C29	H293	H291	120.0	120.0
C28	C29	H293	H292	240.0	240.0
H291	C29	H293	H292	120.0	120.0