PDB Chemical Component D54
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D54
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAA |
CAE |
1.235 |
1.208 |
| OAB |
CAF |
1.432 |
1.428 |
| OAB |
HOAB |
0.950 |
0.967 |
| CAI |
OAC |
1.230 |
1.208 |
| OAD |
CAJ |
1.272 |
1.212 |
| CAF |
CAE |
1.543 |
1.507 |
| CAE |
HAE |
1.080 |
1.080 |
| CAF |
CAG |
1.542 |
1.530 |
| CAF |
HAF |
1.100 |
1.090 |
| OAK |
CAG |
1.445 |
1.429 |
| CAG |
CAH |
1.538 |
1.530 |
| CAG |
HAG |
1.100 |
1.090 |
| CAH |
CAI |
1.538 |
1.506 |
| CAH |
HAH |
1.100 |
1.090 |
| CAH |
HAHA |
1.100 |
1.090 |
| CAI |
CAJ |
1.543 |
1.491 |
| CAJ |
OAL |
1.256 |
1.346 |
| OAK |
HOAK |
0.950 |
0.968 |
| OAL |
HOAL |
0.951 |
0.967 |
Bond Angles for D54
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAA |
CAE |
HAE |
119.4 |
120.0 |
| CAF |
OAB |
HOAB |
109.5 |
114.0 |
| OAB |
CAF |
CAE |
109.6 |
109.5 |
| OAB |
CAF |
CAG |
112.4 |
109.5 |
| OAB |
CAF |
HAF |
107.0 |
109.5 |
| OAD |
CAJ |
CAI |
117.2 |
120.0 |
| OAD |
CAJ |
OAL |
125.7 |
120.0 |
| CAF |
CAE |
HAE |
119.4 |
120.0 |
| CAG |
CAF |
HAF |
108.4 |
109.4 |
| CAF |
CAG |
CAH |
110.7 |
109.5 |
| CAF |
CAG |
HAG |
107.8 |
109.5 |
| OAK |
CAG |
HAG |
108.0 |
109.5 |
| CAH |
CAG |
HAG |
108.6 |
109.5 |
| CAG |
CAH |
CAI |
117.3 |
109.5 |
| CAG |
CAH |
HAH |
107.0 |
109.4 |
| CAG |
CAH |
HAHA |
107.0 |
109.5 |
| CAI |
CAH |
HAH |
107.0 |
109.5 |
| CAI |
CAH |
HAHA |
106.9 |
109.5 |
| CAH |
CAI |
CAJ |
118.3 |
120.0 |
| HAH |
CAH |
HAHA |
111.9 |
109.4 |
| CAI |
CAJ |
OAL |
117.1 |
120.0 |
| CAJ |
OAL |
HOAL |
109.5 |
117.0 |
Torsion Angles for D54
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
CAF |
CAE |
OAA |
304.0 |
360.0 |
| CAF |
CAE |
OAA |
HAE |
180.0 |
180.0 |
| OAB |
CAF |
CAE |
HAE |
124.1 |
180.0 |
| CAG |
CAF |
OAB |
HAF |
241.1 |
240.1 |
| OAB |
CAF |
CAG |
CAH |
200.6 |
55.0 |
| OAB |
CAF |
CAG |
HAG |
319.3 |
175.0 |
| HOAB |
OAB |
CAF |
CAE |
21.2 |
300.0 |
| HOAB |
OAB |
CAF |
CAG |
141.5 |
60.1 |
| HOAB |
OAB |
CAF |
HAF |
260.4 |
180.0 |
| CAH |
CAI |
CAJ |
OAD |
1.8 |
359.9 |
| CAI |
CAJ |
OAD |
OAL |
179.3 |
180.1 |
| OAD |
CAJ |
OAL |
HOAL |
0.0 |
0.1 |
| OAA |
CAE |
CAF |
HAE |
180.0 |
180.0 |
| CAE |
CAF |
OAB |
HOAB |
21.2 |
300.0 |
| OAB |
CAF |
CAE |
CAG |
122.8 |
120.0 |
| OAB |
CAF |
CAE |
HAF |
241.8 |
240.0 |
| CAG |
CAF |
OAB |
HOAB |
141.5 |
60.1 |
| OAB |
CAF |
CAG |
CAE |
238.9 |
239.9 |
| OAB |
CAF |
CAG |
HAF |
118.1 |
120.0 |
| CAG |
CAF |
CAE |
HAE |
1.2 |
60.0 |
| OAK |
CAG |
CAF |
HAG |
118.3 |
120.0 |
| CAH |
CAG |
CAF |
HAG |
241.4 |
240.0 |
| CAF |
CAG |
CAH |
CAI |
154.1 |
175.1 |
| CAF |
CAG |
CAH |
HAH |
274.1 |
295.1 |
| CAF |
CAG |
CAH |
HAHA |
34.1 |
55.0 |
| HAF |
CAF |
OAB |
HOAB |
260.4 |
180.0 |
| OAB |
CAF |
HAF |
CAE |
119.7 |
120.0 |
| OAB |
CAF |
HAF |
CAG |
238.6 |
240.0 |
| HAF |
CAF |
CAE |
HAE |
242.2 |
300.0 |
| HAF |
CAF |
CAG |
CAH |
82.5 |
295.0 |
| HAF |
CAF |
CAG |
HAG |
201.2 |
55.0 |
| OAK |
CAG |
CAF |
HAF |
319.4 |
175.0 |
| CAF |
CAG |
OAK |
HAG |
241.9 |
240.0 |
| CAH |
CAG |
OAK |
HAG |
118.6 |
120.0 |
| OAK |
CAG |
CAH |
HAH |
37.7 |
55.0 |
| OAK |
CAG |
CAH |
HAHA |
157.7 |
175.0 |
| CAH |
CAG |
CAF |
HAF |
82.5 |
295.0 |
| CAF |
CAG |
CAH |
HAG |
118.1 |
120.0 |
| OAK |
CAG |
CAH |
HAG |
241.7 |
240.0 |
| CAI |
CAH |
CAG |
HAH |
240.0 |
240.0 |
| CAI |
CAH |
CAG |
HAHA |
120.0 |
120.1 |
| CAG |
CAH |
CAI |
CAJ |
153.5 |
180.0 |
| HAH |
CAH |
CAG |
HAHA |
240.0 |
240.1 |
| HAG |
CAG |
CAF |
HAF |
201.2 |
55.0 |
| CAF |
CAG |
HAG |
CAH |
240.1 |
239.9 |
| HAG |
CAG |
CAH |
CAI |
36.0 |
55.0 |
| HAG |
CAG |
CAH |
HAH |
156.0 |
175.0 |
| HAG |
CAG |
CAH |
HAHA |
276.0 |
295.0 |
| OAD |
CAJ |
CAI |
CAH |
1.8 |
359.9 |
| CAI |
CAH |
CAG |
HAG |
36.0 |
55.0 |
| CAG |
CAH |
CAI |
HAH |
120.0 |
120.0 |
| CAG |
CAH |
CAI |
HAHA |
240.0 |
240.0 |
| HAH |
CAH |
CAI |
HAHA |
120.0 |
120.0 |
| CAH |
CAI |
CAJ |
OAL |
181.2 |
180.0 |
| HAH |
CAH |
CAG |
HAG |
156.0 |
175.0 |
| CAG |
CAH |
HAH |
CAI |
233.6 |
240.0 |
| CAG |
CAH |
HAH |
HAHA |
116.8 |
120.0 |
| CAI |
CAH |
HAH |
HAHA |
243.2 |
240.0 |
| HAH |
CAH |
CAI |
CAJ |
33.5 |
60.1 |
| HAHA |
CAH |
CAG |
HAG |
276.0 |
295.0 |
| CAG |
CAH |
HAHA |
CAI |
126.4 |
120.1 |
| CAG |
CAH |
HAHA |
HAH |
243.2 |
240.1 |
| CAI |
CAH |
HAHA |
HAH |
116.8 |
120.0 |
| HAHA |
CAH |
CAI |
CAJ |
273.5 |
300.1 |
| OAD |
CAJ |
CAI |
OAL |
180.6 |
179.9 |
| CAJ |
CAI |
CAH |
HAH |
33.5 |
60.1 |
| CAJ |
CAI |
CAH |
HAHA |
273.5 |
300.1 |
| CAI |
CAJ |
OAL |
HOAL |
180.7 |
180.0 |
| OAD |
CAJ |
OAL |
CAI |
179.3 |
180.1 |
| HOAK |
OAK |
CAG |
HAG |
298.1 |
180.0 |