PDB Chemical Component D4P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D4P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.463 1.473
N H 1.020 0.990
N H2 1.020 0.992
CA C 1.505 1.528
CA C1 1.501 1.492
CA HA 1.115 1.106
C O 1.254 1.224
C OXT   1.361
C1 C2 1.382 1.394
C1 C6 1.372 1.395
C2 C3 1.377 1.395
C2 H1 1.103 1.087
C3 C4 1.363 1.395
C3 H3 1.103 1.087
C4 O4 1.359 1.361
C4 C5 1.385 1.395
O4 H4 0.950 0.971
C5 C6 1.386 1.395
C5 H5 1.103 1.087
C6 H6 1.103 1.087
OXT HXT   0.981

Bond Angles for D4P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 118.5 117.4
CA N H2 118.5 117.4
N CA C 110.0 107.9
N CA C1 115.0 113.0
N CA HA 108.1 107.3
H N H2 91.8 123.7
C CA C1 107.4 111.9
C CA HA 108.1 106.2
CA C O 120.7 124.8
CA C OXT   112.9
C1 CA HA 108.1 110.2
CA C1 C2 119.9 120.0
CA C1 C6 118.9 120.0
O C OXT   122.2
C OXT HXT   115.1
C2 C1 C6 121.1 120.0
C1 C2 C3 122.0 120.0
C1 C2 H1 119.0 120.5
C1 C6 C5 116.4 120.0
C1 C6 H6 121.8 120.6
C3 C2 H1 119.0 119.5
C2 C3 C4 117.3 120.0
C2 C3 H3 121.4 119.7
C4 C3 H3 121.4 120.3
C3 C4 O4 119.9 120.0
C3 C4 C5 120.9 120.0
O4 C4 C5 119.1 120.0
C4 O4 H4 119.9 110.3
C4 C5 C6 122.1 120.0
C4 C5 H5 118.9 120.3
C6 C5 H5 118.9 119.6
C5 C6 H6 121.8 119.5

Torsion Angles for D4P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 109.5 166.6
C CA N C1 121.4 124.2
C CA N HA 242.2 245.9
N CA C O 315.5 354.8
N CA C OXT   176.1
C1 CA N HA 120.8 121.7
N CA C1 C2 197.9 240.0
N CA C1 C6 19.1 60.0
CA N H H2 236.0 194.4
H N CA C 93.8 160.2
H N CA C1 332.4 36.0
H N CA HA 211.5 274.3
CA N H2 H 124.0 165.7
H2 N CA C 344.3 353.7
H2 N CA C1 222.9 229.4
H2 N CA HA 102.0 107.7
C CA N H 93.8 160.2
C CA N H2 344.3 353.7
N CA C C1 234.1 235.1
N CA C HA 117.8 114.8
C1 CA C HA 243.6 239.7
C CA C1 C2 75.1 117.9
C CA C1 C6 256.3 297.9
O C CA OXT   178.7
CA C OXT HXT   178.8
C1 CA N H 332.4 36.0
C1 CA N H2 222.9 229.4
N CA C1 C 122.8 122.0
N CA C1 HA 239.2 239.9
C CA C1 HA 116.3 117.9
C1 CA C O 81.4 119.7
C1 CA C OXT   301.0
C2 C1 CA C6 178.8 180.0
CA C1 C2 C3 180.0 180.0
CA C1 C2 H1 360.0 0.1
CA C1 C6 C5 182.5 180.0
CA C1 C6 H6 2.5 0.0
HA CA N H 211.5 274.3
HA CA N H2 102.0 107.7
N CA HA C 241.0 244.8
N CA HA C1 125.1 123.4
C CA HA C1 244.1 238.6
HA CA C O 197.7 240.0
HA CA C OXT   61.3
HA CA C1 C2 318.7 0.0
HA CA C1 C6 140.0 180.0
O C CA C1 81.4 119.7
O C CA HA 197.7 240.0
CA C O OXT   181.4
O C OXT HXT   360.0
OXT C CA C1   301.0
OXT C CA HA   61.3
CA C OXT O   178.8
C2 C1 CA HA 318.7 0.0
CA C1 C2 C6 181.3 180.0
C2 C1 C6 C5 3.7 360.0
C2 C1 C6 H6 183.7 180.0
C3 C2 C1 H1 180.0 180.0
C1 C2 C3 C4 359.3 360.0
C1 C2 C3 H3 179.3 180.0
C6 C1 CA HA 140.0 180.0
CA C1 C6 C2 178.8 180.0
C6 C1 C2 C3 358.7 0.0
C6 C1 C2 H1 178.7 180.1
C4 C5 C6 C1 355.5 0.0
C1 C6 C5 H5 175.5 180.1
C5 C6 C1 H6 180.0 180.0
C3 C2 C1 C6 358.7 0.0
C1 C2 C3 H1 180.0 180.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 O4 178.5 179.9
C2 C3 C4 C5 360.0 0.0
H1 C2 C1 C6 178.7 180.1
C1 C2 H1 C3 180.0 180.0
H1 C2 C3 C4 179.3 179.9
H1 C2 C3 H3 359.3 360.0
C4 C3 C2 H1 179.3 179.9
C2 C3 C4 H3 180.0 180.0
O4 C4 C3 C5 178.6 179.9
C3 C4 O4 H4 180.0 347.9
C3 C4 C5 C6 2.7 360.0
C3 C4 C5 H5 182.7 179.9
H3 C3 C2 H1 359.3 360.0
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 O4 358.6 359.9
H3 C3 C4 C5 180.0 180.0
O4 C4 C3 H3 358.6 359.9
C3 C4 O4 C5 181.4 180.1
O4 C4 C5 C6 184.1 180.1
O4 C4 C5 H5 4.1 0.0
C1 C6 C5 C4 355.5 0.0
C5 C4 C3 H3 180.0 180.0
C3 C4 C5 O4 178.6 179.9
C5 C4 O4 H4 358.6 167.7
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 175.5 180.0
H4 O4 C4 C5 358.6 167.7
C1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 179.9
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 H6 355.6 0.0
C1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 355.6 0.0