PDB Chemical Component D42

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D42

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.520	1.529
C1	N6	1.482	1.469
C1	H11	1.116	1.090
C1	H12	1.114	1.090
C2	N3	1.481	1.468
C2	H21A	1.115	1.090
C2	H22	1.115	1.090
N3	C4	1.479	1.469
N3	N19	1.511	1.366
C4	C5	1.533	1.530
C4	H41	1.115	1.090
C4	H42	1.116	1.090
C5	N6	1.490	1.468
C5	H51	1.114	1.089
C5	H52	1.115	1.090
N6	C15	1.464	1.469
C15	H151	1.116	1.090
C15	H152	1.116	1.090
C15	H153	1.115	1.090
N19	C20	1.337	1.347
N19	H19	1.020	0.970
C20	N21	1.334	1.348
C20	O47	1.237	1.216
N21	C22	1.418	1.392
N21	H21	1.020	0.970
C22	C23	1.481	1.392
C22	C27	1.475	1.401
C23	C24	1.475	1.379
C23	H23	1.103	1.080
C24	C25	1.477	1.386
C24	H24	1.103	1.080
C25	C26	1.466	1.388
C25	H25	1.104	1.080
C26	C27	1.466	1.406
C26	C31	1.448	1.484
C27	C33	1.456	1.476
C31	C32	1.447	1.466
C31	N34	1.411	1.310
C32	C33	1.457	1.467
C32	C36	1.453	1.392
C33	O50	1.232	1.218
N34	N35	1.516	1.398
N35	C36	1.412	1.365
N35	H35	1.020	0.970
C36	C37	1.457	1.467
C37	S38	1.816	1.787
C37	C41	1.462	1.377
S38	C39	1.822	1.736
C39	N40	1.419	1.316
C39	C46	1.523	1.507
N40	C41	1.417	1.310
C41	C42	1.500	1.508
C42	H421	1.115	1.089
C42	H422	1.115	1.090
C42	H423	1.116	1.090
C46	H461	1.115	1.090
C46	H462	1.116	1.090
C46	H463	1.114	1.090

Bond Angles for D42

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N6	111.1	109.6
C2	C1	H11	111.6	109.4
C2	C1	H12	111.6	109.5
C1	C2	N3	111.7	109.6
C1	C2	H21A	111.4	109.4
C1	C2	H22	111.4	109.5
N6	C1	H11	111.6	109.4
N6	C1	H12	111.6	109.5
C1	N6	C5	115.1	106.9
C1	N6	C15	112.2	106.7
H11	C1	H12	98.7	109.4
N3	C2	H21A	111.4	109.4
N3	C2	H22	111.4	109.4
C2	N3	C4	113.1	106.9
C2	N3	N19	114.4	106.7
H21A	C2	H22	99.0	109.4
C4	N3	N19	126.7	106.7
N3	C4	C5	111.8	109.6
N3	C4	H41	111.4	109.4
N3	C4	H42	111.3	109.5
N3	N19	C20	124.6	120.0
N3	N19	H19	106.8	120.0
C5	C4	H41	111.4	109.4
C5	C4	H42	111.4	109.4
C4	C5	N6	113.0	109.6
C4	C5	H51	110.9	109.4
C4	C5	H52	110.9	109.4
H41	C4	H42	99.0	109.5
N6	C5	H51	110.9	109.5
N6	C5	H52	110.9	109.5
C5	N6	C15	118.9	106.7
H51	C5	H52	99.5	109.4
N6	C15	H151	112.2	109.5
N6	C15	H152	111.2	109.5
N6	C15	H153	111.2	109.5
H151	C15	H152	111.2	109.5
H151	C15	H153	111.2	109.5
H152	C15	H153	99.1	109.5
C20	N19	H19	106.8	120.0
N19	C20	N21	119.0	120.0
N19	C20	O47	120.4	120.0
N21	C20	O47	120.6	120.0
C20	N21	C22	127.0	120.0
C20	N21	H21	113.0	120.0
C22	N21	H21	120.0	120.0
N21	C22	C23	125.7	120.1
N21	C22	C27	112.1	120.1
C23	C22	C27	122.2	119.8
C22	C23	C24	117.7	120.3
C22	C23	H23	121.4	119.9
C22	C27	C26	118.6	119.5
C22	C27	C33	130.2	131.6
C24	C23	H23	120.9	119.9
C23	C24	C25	120.8	120.5
C23	C24	H24	119.5	119.8
C25	C24	H24	119.6	119.7
C24	C25	C26	120.0	120.2
C24	C25	H25	120.4	119.9
C26	C25	H25	119.6	119.9
C25	C26	C27	120.7	119.7
C25	C26	C31	134.1	131.6
C27	C26	C31	105.0	108.7
C26	C27	C33	111.2	108.9
C26	C31	C32	109.5	107.5
C26	C31	N34	137.1	145.2
C27	C33	C32	105.0	107.7
C27	C33	O50	124.7	126.2
C32	C31	N34	113.3	107.3
C31	C32	C33	109.3	107.2
C31	C32	C36	108.0	106.5
C31	N34	N35	100.4	109.7
C33	C32	C36	142.5	146.3
C32	C33	O50	130.0	126.1
C32	C36	N35	104.3	107.2
C32	C36	C37	134.6	126.4
N34	N35	C36	114.0	109.3
N34	N35	H35	126.1	125.3
C36	N35	H35	119.9	125.3
N35	C36	C37	120.4	126.5
C36	C37	S38	121.9	129.8
C36	C37	C41	128.9	129.7
S38	C37	C41	109.2	100.5
C37	S38	C39	90.7	97.5
C37	C41	N40	115.2	117.9
C37	C41	C42	127.3	121.1
S38	C39	N40	112.1	102.4
S38	C39	C46	124.3	128.8
N40	C39	C46	123.6	128.8
C39	N40	C41	112.7	121.7
C39	C46	H461	124.3	109.5
C39	C46	H462	106.9	109.5
C39	C46	H463	107.0	109.5
N40	C41	C42	117.5	121.0
C41	C42	H421	127.3	109.4
C41	C42	H422	106.0	109.4
C41	C42	H423	106.0	109.4
H421	C42	H422	106.0	109.5
H421	C42	H423	105.9	109.5
H422	C42	H423	103.4	109.5
H461	C46	H462	107.0	109.5
H461	C46	H463	107.0	109.5
H462	C46	H463	102.7	109.4

Torsion Angles for D42

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N6	C1	C2	H11	234.8	120.0
N6	C1	C2	H12	125.3	239.9
C2	C1	N6	C5	310.2	61.3
C2	C1	N6	C15	170.0	175.1
H11	C1	C2	H12	250.6	119.9
N3	C2	C1	H21A	234.7	120.0
N3	C2	C1	H22	125.3	239.9
C1	C2	N3	C4	303.8	61.3
C1	C2	N3	N19	148.5	175.1
H21A	C2	C1	H22	250.6	119.9
C2	C1	N6	H11	125.3	240.0
C2	C1	N6	H12	234.7	120.1
N6	C1	C2	N3	53.3	297.0
N6	C1	C2	H21A	178.6	177.0
N6	C1	C2	H22	288.1	57.1
H11	C1	N6	H12	109.5	240.1
C4	C5	N6	C1	47.2	298.7
C1	N6	C5	H51	281.9	58.8
C1	N6	C5	H52	172.4	178.7
C5	N6	C1	C15	140.2	246.2
C1	N6	C15	H151	180.0	306.0
C1	N6	C15	H152	305.2	66.0
C1	N6	C15	H153	54.7	186.0
C2	C1	H11	N6	235.0	120.1
C2	C1	H11	H12	117.5	240.0
H11	C1	C2	N3	178.6	177.0
H11	C1	C2	H21A	303.9	57.0
H11	C1	C2	H22	53.3	297.1
N6	C1	H11	H12	242.5	119.9
H11	C1	N6	C5	184.9	181.3
H11	C1	N6	C15	44.7	295.1
C2	C1	H12	N6	125.0	239.8
C2	C1	H12	H11	242.5	119.9
H12	C1	C2	N3	288.0	57.1
H12	C1	C2	H21A	53.3	297.1
H12	C1	C2	H22	162.8	177.1
N6	C1	H12	H11	117.5	240.1
H12	C1	N6	C5	75.5	301.2
H12	C1	N6	C15	295.3	55.0
N3	C2	C1	N6	53.3	297.0
N3	C2	C1	H11	178.6	177.0
N3	C2	C1	H12	288.0	57.1
C1	C2	N3	H21A	125.3	240.0
C1	C2	N3	H22	234.7	120.1
H21A	C2	N3	H22	109.4	240.1
C4	N3	C2	N19	155.3	246.2
C2	N3	C4	C5	52.6	298.7
C2	N3	C4	H41	177.9	178.8
C2	N3	C4	H42	287.4	58.8
C2	N3	N19	C20	76.5	123.9
C2	N3	N19	H19	311.3	303.8
H21A	C2	C1	N6	178.6	177.0
H21A	C2	C1	H11	303.9	57.0
H21A	C2	C1	H12	53.3	297.1
C1	C2	H21A	N3	234.5	120.1
C1	C2	H21A	H22	117.2	240.0
N3	C2	H21A	H22	242.7	119.9
H21A	C2	N3	C4	178.4	181.3
H21A	C2	N3	N19	23.2	295.1
H22	C2	C1	N6	288.1	57.1
H22	C2	C1	H11	53.3	297.1
H22	C2	C1	H12	162.8	177.1
C1	C2	H22	N3	125.5	239.8
C1	C2	H22	H21A	242.7	119.9
N3	C2	H22	H21A	117.3	240.1
H22	C2	N3	C4	69.0	301.2
H22	C2	N3	N19	273.7	55.0
C4	N3	C2	H21A	178.4	181.3
C4	N3	C2	H22	69.0	301.2
C2	N3	C4	N19	208.4	113.8
C4	N3	N19	C20	285.1	237.9
C4	N3	N19	H19	159.9	57.7
C5	C4	N3	H41	234.7	120.0
C5	C4	N3	H42	125.3	240.0
N3	C4	C5	N6	312.7	63.0
N3	C4	C5	H51	78.0	302.9
N3	C4	C5	H52	187.5	183.0
H41	C4	N3	H42	250.6	120.0
N19	N3	C2	H21A	23.2	295.1
N19	N3	C2	H22	273.7	55.0
C2	N3	N19	C4	151.3	246.0
N19	N3	C4	C5	204.3	184.9
N19	N3	C4	H41	329.6	64.9
N19	N3	C4	H42	79.0	304.9
C20	N19	N3	H19	125.2	180.1
N3	N19	C20	N21	62.6	5.0
N3	N19	C20	O47	242.0	185.1
C1	N6	C5	C4	47.2	298.7
C5	C4	N3	N19	204.3	184.9
N3	C4	C5	H41	125.3	240.0
N3	C4	C5	H42	234.8	120.1
H41	C4	C5	H42	109.5	240.0
N6	C5	C4	H51	234.7	120.1
N6	C5	C4	H52	125.2	240.0
C4	C5	N6	C15	184.6	184.9
H51	C5	C4	H52	250.4	119.9
H41	C4	N3	N19	329.6	64.9
N3	C4	H41	C5	234.5	120.1
N3	C4	H41	H42	117.2	240.0
C5	C4	H41	H42	242.7	119.9
H41	C4	C5	N6	187.4	183.0
H41	C4	C5	H51	312.7	62.9
H41	C4	C5	H52	62.2	303.0
H42	C4	N3	N19	79.0	304.9
N3	C4	H42	C5	125.5	239.9
N3	C4	H42	H41	242.7	119.9
C5	C4	H42	H41	117.3	240.1
H42	C4	C5	N6	77.9	302.9
H42	C4	C5	H51	203.2	182.8
H42	C4	C5	H52	312.8	63.0
C5	N6	C1	H11	184.9	181.3
C5	N6	C1	H12	75.5	301.2
C1	N6	C5	C15	222.6	113.8
N6	C5	C4	H41	187.4	183.0
N6	C5	C4	H42	77.9	302.9
C4	C5	N6	H51	125.3	239.9
C4	C5	N6	H52	234.8	120.0
H51	C5	N6	H52	109.5	240.0
C5	N6	C15	H151	41.5	60.0
C5	N6	C15	H152	166.7	180.0
C5	N6	C15	H153	276.2	300.0
H51	C5	C4	H41	312.7	62.9
H51	C5	C4	H42	203.2	182.8
C4	C5	H51	N6	233.6	120.2
C4	C5	H51	H52	116.8	240.2
N6	C5	H51	H52	243.2	120.0
H51	C5	N6	C15	59.3	304.9
H52	C5	C4	H41	62.2	303.0
H52	C5	C4	H42	312.8	63.0
C4	C5	H52	N6	126.4	239.9
C4	C5	H52	H51	243.2	119.9
N6	C5	H52	H51	116.8	240.0
H52	C5	N6	C15	309.8	64.9
C15	N6	C1	H11	44.7	295.1
C15	N6	C1	H12	295.3	55.0
C1	N6	C15	C5	138.5	246.0
C15	N6	C5	H51	59.3	304.9
C15	N6	C5	H52	309.8	64.9
H151	C15	N6	H152	234.8	240.0
H151	C15	N6	H153	125.3	120.0
H152	C15	N6	H153	250.5	240.0
N6	C15	H151	H152	125.2	120.0
N6	C15	H151	H153	234.7	240.0
H152	C15	H151	H153	109.5	120.0
N6	C15	H152	H151	234.2	240.0
N6	C15	H152	H153	117.1	120.0
H151	C15	H152	H153	242.9	240.0
N6	C15	H153	H151	125.9	120.0
N6	C15	H153	H152	242.9	240.0
H151	C15	H153	H152	117.1	120.0
N3	N19	C20	H19	234.8	179.9
N21	C20	N19	O47	180.6	179.9
N19	C20	N21	C22	166.2	174.2
N19	C20	N21	H21	346.2	354.3
N3	N19	H19	C20	135.4	180.1
H19	N19	C20	N21	187.8	185.1
H19	N19	C20	O47	7.2	5.2
N21	C20	N19	H19	187.8	185.1
N19	C20	N21	O47	179.4	180.1
C22	N21	C20	H21	180.0	179.9
C20	N21	C22	C23	4.4	332.5
C20	N21	C22	C27	185.0	152.2
O47	C20	N19	H19	7.2	5.2
N19	C20	O47	N21	180.6	179.9
O47	C20	N21	C22	346.8	354.1
O47	C20	N21	H21	166.7	174.2
C22	N21	C20	O47	346.8	354.1
C20	N21	C22	H21	180.0	180.1
C23	C22	N21	C27	179.3	180.3
N21	C22	C23	C24	180.9	180.0
N21	C22	C23	H23	0.9	359.9
N21	C22	C27	C26	178.7	179.8
N21	C22	C27	C33	354.6	0.7
H21	N21	C20	O47	166.7	174.2
C20	N21	H21	C22	180.0	179.9
H21	N21	C22	C23	184.4	152.4
H21	N21	C22	C27	5.1	332.1
C23	C22	N21	H21	184.4	152.4
N21	C22	C23	C27	180.8	179.7
C23	C22	C27	C26	359.3	359.5
C23	C22	C27	C33	175.3	180.4
C24	C23	C22	H23	180.0	180.1
C22	C23	C24	C25	0.4	0.0
C22	C23	C24	H24	180.4	180.0
C27	C22	N21	H21	5.1	332.1
N21	C22	C27	C23	179.3	180.3
C27	C22	C23	C24	0.1	0.3
C27	C22	C23	H23	180.1	180.2
C25	C26	C27	C22	0.8	0.5
C22	C27	C26	C31	177.1	180.3
C26	C27	C22	C33	184.0	179.1
C22	C27	C33	C32	183.7	179.6
C22	C27	C33	O50	358.9	359.3
C24	C23	C22	C27	0.1	0.3
C22	C23	C24	H23	180.0	179.9
C25	C24	C23	H24	180.0	180.1
C23	C24	C25	C26	359.7	359.9
C23	C24	C25	H25	179.7	180.0
H23	C23	C22	C27	180.1	180.2
C22	C23	H23	C24	180.0	180.1
H23	C23	C24	C25	180.4	180.1
H23	C23	C24	H24	0.4	0.0
C25	C24	C23	H23	180.4	180.1
C23	C24	C25	H24	180.0	179.9
C26	C25	C24	H25	180.0	179.9
C24	C25	C26	C27	359.7	359.8
C24	C25	C26	C31	184.7	180.0
H24	C24	C23	H23	0.4	0.0
C23	C24	H24	C25	180.0	180.1
H24	C24	C25	C26	179.7	180.0
H24	C24	C25	H25	359.7	0.0
C22	C27	C26	C25	0.8	0.5
C26	C25	C24	H24	179.7	180.0
C24	C25	C26	H25	180.0	180.1
C27	C26	C25	C31	175.0	179.8
C25	C26	C27	C33	184.1	179.8
C25	C26	C31	C32	175.0	180.1
C25	C26	C31	N34	359.6	0.1
H25	C25	C24	H24	359.7	0.0
C24	C25	H25	C26	180.0	179.9
H25	C25	C26	C27	179.7	179.8
H25	C25	C26	C31	4.7	360.0
C22	C27	C26	C33	176.7	180.7
C27	C26	C25	H25	179.7	179.8
C25	C26	C27	C31	183.7	180.1
C27	C26	C31	C32	359.5	0.2
C27	C26	C31	N34	184.1	180.2
C26	C27	C33	C32	359.9	0.4
C26	C27	C33	O50	175.2	180.1
C31	C26	C25	H25	4.7	360.0
C25	C26	C31	C27	175.5	179.8
C31	C26	C27	C33	0.4	359.6
C32	C31	C26	N34	175.4	180.0
C26	C31	C32	C33	0.5	0.0
C26	C31	C32	C36	183.8	180.0
C26	C31	N34	N35	175.5	179.9
C22	C27	C33	C26	183.8	179.2
C33	C27	C26	C31	0.4	359.6
C31	C32	C33	C27	359.7	359.8
C27	C33	C32	C36	174.5	179.7
C32	C33	C27	O50	184.8	180.3
C26	C31	C32	N34	183.4	180.0
C27	C33	C32	C31	359.7	359.8
C32	C31	N34	N35	0.3	359.9
C33	C32	C31	C36	176.7	180.0
C31	C32	C33	O50	184.9	180.0
C31	C32	C36	N35	359.0	360.0
C31	C32	C36	C37	169.1	180.0
C26	C31	N34	C32	175.3	180.0
N34	C31	C32	C33	177.1	180.0
N34	C31	C32	C36	0.5	0.0
C31	N34	N35	C36	359.1	0.1
C31	N34	N35	H35	179.2	180.0
C27	C33	C32	O50	174.9	179.7
C33	C32	C31	N34	177.1	180.0
C31	C32	C33	C36	185.2	180.1
C33	C32	C36	N35	184.2	180.1
C33	C32	C36	C37	354.3	0.0
C36	C32	C31	N34	0.5	0.0
C31	C32	C36	C33	174.8	179.9
C36	C32	C33	O50	359.7	360.0
N34	N35	C36	C32	1.2	360.0
C32	C36	N35	H35	181.1	180.0
N35	C36	C32	C37	189.9	180.0
C32	C36	C37	S38	338.4	320.3
C32	C36	C37	C41	161.9	140.0
C27	C33	O50	C32	186.0	180.3
O50	C33	C32	C36	359.7	360.0
C32	C36	N35	N34	1.2	360.0
C36	N35	N34	H35	179.9	180.1
N34	N35	C36	C37	189.4	180.0
C32	C36	N35	C37	171.9	180.0
N34	N35	C36	H35	180.1	179.9
N35	C36	C37	S38	147.2	140.3
N35	C36	C37	C41	330.8	320.0
N34	N35	H35	C36	179.9	180.1
H35	N35	C36	C37	9.3	0.1
C32	C36	C37	N35	191.1	180.0
C37	C36	N35	H35	9.3	0.1
S38	C37	C36	C41	176.4	180.3
C36	C37	S38	C39	182.7	180.0
C36	C37	C41	N40	177.2	179.8
C36	C37	C41	C42	358.4	0.3
C36	C37	S38	C41	182.9	179.8
S38	C37	C41	N40	0.4	359.6
S38	C37	C41	C42	181.6	180.1
C37	S38	C39	N40	0.0	0.0
C37	S38	C39	C46	179.5	180.0
C36	C37	C41	S38	176.8	180.2
C41	C37	S38	C39	359.8	0.2
C39	N40	C41	C37	359.6	0.6
N40	C41	C37	C42	178.8	179.5
C37	C41	C42	H421	180.0	269.4
C37	C41	C42	H422	305.3	29.4
C37	C41	C42	H423	54.8	149.4
C39	S38	C37	C41	359.8	0.2
N40	C39	S38	C46	180.5	180.0
S38	C39	N40	C41	0.2	359.7
S38	C39	C46	H461	180.0	90.0
S38	C39	C46	H462	305.3	210.0
S38	C39	C46	H463	54.7	330.0
C37	C41	N40	C39	359.6	0.6
S38	C39	N40	C46	179.5	180.0
N40	C39	C46	H461	359.4	270.0
N40	C39	C46	H462	124.6	30.0
N40	C39	C46	H463	234.1	150.0
C39	N40	C41	C42	178.6	180.0
S38	C39	C46	N40	180.6	180.0
C46	C39	N40	C41	180.7	179.7
H461	C46	C39	H462	234.8	240.0
H461	C46	C39	H463	125.3	120.0
H462	C46	C39	H463	250.5	240.0
C37	C41	N40	C42	181.1	180.5
C41	N40	C39	C46	180.7	179.7
N40	C41	C42	H421	1.2	90.0
N40	C41	C42	H422	126.5	210.0
N40	C41	C42	H423	236.0	330.0
C37	C41	C42	N40	178.8	179.4
H421	C42	C41	H422	234.7	240.0
H421	C42	C41	H423	125.2	120.0
H422	C42	C41	H423	250.5	240.0
C41	C42	H421	H422	125.4	120.0
C41	C42	H421	H423	234.8	240.1
H422	C42	H421	H423	109.4	120.1
C41	C42	H422	H421	222.5	240.0
C41	C42	H422	H423	111.3	119.9
H421	C42	H422	H423	248.8	239.9
C41	C42	H423	H421	137.5	119.9
C41	C42	H423	H422	248.7	240.1
H421	C42	H423	H422	111.3	120.1
C39	C46	H461	H462	125.2	120.0
C39	C46	H461	H463	234.7	240.0
H462	C46	H461	H463	109.5	120.0
C39	C46	H462	H461	224.9	240.0
C39	C46	H462	H463	112.4	120.0
H461	C46	H462	H463	247.5	240.0
C39	C46	H463	H461	135.2	120.0
C39	C46	H463	H462	247.6	240.0
H461	C46	H463	H462	112.4	120.0