PDB Chemical Component D3T

Ideal Model

Chemical Description

Name 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
Formula C10 H17 N2 O13 P3
Formal charge 0
Molecular weight 466.169 g/mol
Component type DNA OH 3 PRIME TERMINUS
Nonstandard Parent Id DT

Chemical features

Atom count 45
Chiral atom count 4
Chiral atoms PA C4' C1' PB
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) (hydroxy-phosphonooxy-phosphoryl) [(2S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2CC[C@@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2CC[C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O
InChI descriptor InChI=1S/C10H17N2O13P3/c1-6-4-12(10(14)11-9(6)13)8-3-2-7(23-8)5-22-27(18,19)25-28(20,21)24-26(15,16)17/h4,7-8H,2-3,5H2,1H3,(H,18,19)(H,20,21)(H,11,13,14)(H2,15,16,17)/t7-,8+/m0/s1
InChIKey descriptor URGJWIFLBWJRMF-JGVFFNPUSA-N

Status Information

Last modified 2011-06-04
Created 2004-06-28
Release status REL
Model PDB code 1TK8
Processing site RCSB