PDB Chemical Component D3L
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D3L
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O18 |
C19 |
1.410 |
1.428 |
| O18 |
C02 |
1.406 |
1.359 |
| C03 |
C02 |
1.396 |
1.394 |
| C03 |
C04 |
1.390 |
1.376 |
| C02 |
C01 |
1.397 |
1.379 |
| C04 |
C05 |
1.423 |
1.391 |
| C01 |
C06 |
1.422 |
1.401 |
| C05 |
C06 |
1.369 |
1.409 |
| C05 |
N09 |
1.379 |
1.378 |
| C06 |
C07 |
1.425 |
1.415 |
| N09 |
C08 |
1.343 |
1.381 |
| C07 |
C08 |
1.393 |
1.361 |
| C08 |
C10 |
1.520 |
1.468 |
| C10 |
O11 |
1.213 |
1.217 |
| C10 |
C12 |
1.518 |
1.478 |
| C17 |
C12 |
1.388 |
1.397 |
| C17 |
C16 |
1.386 |
1.380 |
| C12 |
C13 |
1.387 |
1.397 |
| C16 |
C15 |
1.385 |
1.384 |
| C13 |
C14 |
1.387 |
1.379 |
| C15 |
C14 |
1.384 |
1.383 |
| C13 |
H1 |
1.080 |
1.080 |
| C15 |
H2 |
1.080 |
1.080 |
| C17 |
H3 |
1.080 |
1.079 |
| C01 |
H4 |
1.080 |
1.081 |
| C03 |
H5 |
1.080 |
1.079 |
| C04 |
H6 |
1.080 |
1.080 |
| C07 |
H7 |
1.080 |
1.080 |
| N09 |
H8 |
1.000 |
0.970 |
| C14 |
H9 |
1.080 |
1.080 |
| C16 |
H10 |
1.080 |
1.080 |
| C19 |
H11 |
1.100 |
1.091 |
| C19 |
H12 |
1.100 |
1.090 |
| C19 |
H13 |
1.100 |
1.090 |
Bond Angles for D3L
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O18 |
C19 |
H11 |
109.5 |
109.5 |
| O18 |
C19 |
H12 |
109.5 |
109.5 |
| O18 |
C19 |
H13 |
109.4 |
109.5 |
| C03 |
C04 |
C05 |
120.0 |
120.0 |
| C04 |
C03 |
H5 |
120.0 |
119.7 |
| C03 |
C04 |
H6 |
120.0 |
120.0 |
| C02 |
C01 |
C06 |
120.1 |
119.7 |
| C02 |
C01 |
H4 |
120.0 |
120.1 |
| C04 |
C05 |
C06 |
120.2 |
119.6 |
| C04 |
C05 |
N09 |
131.3 |
133.0 |
| C05 |
C04 |
H6 |
120.0 |
120.0 |
| C01 |
C06 |
C05 |
119.7 |
119.7 |
| C01 |
C06 |
C07 |
133.6 |
133.3 |
| C06 |
C01 |
H4 |
120.0 |
120.2 |
| C06 |
C05 |
N09 |
108.5 |
107.4 |
| C05 |
C06 |
C07 |
106.6 |
107.0 |
| C05 |
N09 |
C08 |
109.7 |
108.7 |
| C05 |
N09 |
H8 |
125.2 |
125.6 |
| C06 |
C07 |
C08 |
107.1 |
107.7 |
| C06 |
C07 |
H7 |
126.5 |
126.1 |
| C08 |
C07 |
H7 |
126.5 |
126.1 |
| C08 |
C10 |
O11 |
118.9 |
120.0 |
| C08 |
C10 |
C12 |
122.2 |
120.0 |
| O11 |
C10 |
C12 |
118.9 |
119.9 |
| C10 |
C12 |
C17 |
121.1 |
120.1 |
| C10 |
C12 |
C13 |
119.3 |
120.2 |
| C12 |
C17 |
C16 |
120.1 |
119.8 |
| C12 |
C17 |
H3 |
120.0 |
120.1 |
| C16 |
C17 |
H3 |
119.9 |
120.1 |
| C17 |
C16 |
H10 |
120.0 |
119.9 |
| C12 |
C13 |
C14 |
120.3 |
119.8 |
| C12 |
C13 |
H1 |
119.8 |
120.0 |
| C16 |
C15 |
H2 |
119.9 |
119.8 |
| C13 |
C14 |
C15 |
119.9 |
120.2 |
| C14 |
C13 |
H1 |
119.9 |
120.2 |
| C13 |
C14 |
H9 |
120.1 |
119.9 |
| C14 |
C15 |
H2 |
120.0 |
119.9 |
| C15 |
C14 |
H9 |
120.1 |
119.9 |
| H11 |
C19 |
H12 |
109.4 |
109.5 |
| H11 |
C19 |
H13 |
109.5 |
109.4 |
| H12 |
C19 |
H13 |
109.5 |
109.4 |
Torsion Angles for D3L
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H11 |
C19 |
O18 |
H12 |
240.0 |
240.0 |
| H11 |
C19 |
O18 |
H13 |
120.0 |
120.0 |
| H12 |
C19 |
O18 |
H13 |
240.0 |
240.0 |
| O18 |
C02 |
C01 |
H4 |
0.0 |
359.7 |
| C03 |
C02 |
C01 |
C06 |
0.2 |
0.0 |
| C03 |
C02 |
C01 |
H4 |
180.2 |
179.7 |
| C03 |
C04 |
C05 |
C06 |
0.3 |
0.0 |
| C03 |
C04 |
C05 |
N09 |
180.1 |
180.0 |
| C05 |
C04 |
C03 |
H6 |
180.0 |
180.0 |
| C02 |
C01 |
C06 |
C05 |
359.9 |
360.0 |
| C02 |
C01 |
C06 |
C07 |
179.8 |
179.8 |
| C06 |
C01 |
C02 |
H4 |
180.0 |
180.3 |
| C05 |
C04 |
C03 |
H5 |
179.8 |
180.0 |
| C03 |
C04 |
C05 |
H6 |
180.0 |
180.0 |
| C01 |
C06 |
C05 |
C04 |
359.9 |
0.0 |
| C06 |
C05 |
C04 |
N09 |
180.1 |
180.1 |
| C04 |
C05 |
C06 |
C07 |
180.0 |
180.1 |
| C04 |
C05 |
N09 |
C08 |
180.3 |
179.9 |
| C04 |
C05 |
N09 |
H8 |
0.3 |
0.1 |
| C02 |
C01 |
C06 |
H4 |
180.0 |
179.7 |
| C04 |
C05 |
C06 |
C01 |
359.9 |
0.0 |
| C01 |
C06 |
C05 |
N09 |
180.0 |
180.1 |
| C05 |
C06 |
C01 |
C07 |
180.1 |
180.2 |
| C01 |
C06 |
C07 |
C08 |
179.9 |
180.0 |
| C01 |
C06 |
C07 |
H7 |
359.9 |
359.9 |
| C04 |
C05 |
C06 |
N09 |
179.9 |
179.9 |
| C06 |
C05 |
C04 |
H6 |
180.2 |
180.0 |
| C01 |
C06 |
C05 |
C07 |
179.9 |
179.9 |
| C05 |
C06 |
C01 |
H4 |
179.9 |
180.3 |
| C06 |
C05 |
N09 |
C08 |
0.1 |
359.9 |
| C06 |
C05 |
N09 |
H8 |
180.1 |
180.0 |
| C05 |
C06 |
C07 |
C08 |
359.8 |
359.8 |
| C05 |
C06 |
C07 |
H7 |
179.8 |
179.7 |
| C04 |
C05 |
N09 |
C06 |
180.1 |
180.1 |
| N09 |
C05 |
C04 |
H6 |
0.1 |
360.0 |
| N09 |
C05 |
C06 |
C07 |
0.1 |
0.2 |
| C01 |
C06 |
C07 |
C05 |
180.1 |
180.2 |
| C07 |
C06 |
C01 |
H4 |
359.8 |
0.1 |
| C07 |
C06 |
C05 |
N09 |
0.1 |
0.2 |
| C08 |
C07 |
C06 |
H7 |
180.0 |
180.1 |
| C05 |
N09 |
C08 |
H8 |
180.0 |
180.2 |
| N09 |
C08 |
C07 |
H7 |
180.3 |
180.2 |
| N09 |
C08 |
C10 |
O11 |
18.9 |
173.3 |
| N09 |
C08 |
C10 |
C12 |
200.0 |
353.1 |
| C05 |
N09 |
C08 |
C07 |
359.7 |
0.0 |
| C06 |
C07 |
C08 |
H7 |
180.0 |
179.9 |
| C07 |
C08 |
C10 |
O11 |
199.0 |
353.5 |
| C07 |
C08 |
C10 |
C12 |
20.0 |
173.3 |
| O11 |
C10 |
C08 |
C12 |
179.0 |
180.3 |
| C08 |
C10 |
C12 |
C17 |
26.6 |
333.0 |
| C08 |
C10 |
C12 |
C13 |
206.0 |
153.1 |
| C08 |
C10 |
O11 |
C12 |
181.0 |
179.7 |
| O11 |
C10 |
C12 |
C17 |
207.6 |
152.7 |
| O11 |
C10 |
C12 |
C13 |
27.0 |
332.8 |
| C08 |
C10 |
C12 |
O11 |
179.0 |
180.3 |
| C10 |
C12 |
C17 |
C16 |
180.0 |
180.5 |
| C10 |
C12 |
C17 |
H3 |
360.0 |
0.1 |
| C10 |
C12 |
C13 |
C14 |
180.0 |
180.0 |
| C10 |
C12 |
C13 |
H1 |
359.9 |
359.7 |
| C10 |
C12 |
C17 |
C13 |
179.4 |
180.1 |
| C16 |
C17 |
C12 |
H3 |
180.0 |
180.5 |
| C12 |
C17 |
C16 |
H10 |
179.7 |
180.0 |
| C17 |
C12 |
C13 |
C14 |
359.4 |
0.0 |
| C17 |
C12 |
C13 |
H1 |
179.4 |
179.8 |
| C12 |
C17 |
C16 |
H3 |
180.0 |
179.5 |
| C17 |
C16 |
C15 |
H2 |
180.1 |
180.5 |
| C10 |
C12 |
C13 |
C17 |
180.6 |
179.9 |
| C12 |
C13 |
C14 |
C15 |
0.4 |
359.8 |
| C14 |
C13 |
C12 |
H1 |
180.0 |
180.3 |
| C12 |
C13 |
C14 |
H9 |
180.4 |
179.7 |
| C14 |
C15 |
C16 |
H2 |
180.0 |
180.1 |
| C16 |
C15 |
C14 |
H9 |
179.9 |
180.0 |
| C12 |
C13 |
C14 |
H1 |
180.0 |
179.7 |
| C13 |
C14 |
C15 |
H2 |
179.9 |
180.0 |
| C15 |
C14 |
C13 |
H9 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H2 |
180.0 |
179.9 |
| C15 |
C14 |
C13 |
H1 |
180.4 |
180.1 |
| C13 |
C14 |
C15 |
H9 |
180.0 |
180.0 |
| C12 |
C13 |
H1 |
C14 |
180.0 |
180.3 |
| H1 |
C13 |
C14 |
C15 |
180.4 |
180.1 |
| H1 |
C13 |
C14 |
H9 |
0.4 |
0.0 |
| H2 |
C15 |
C14 |
H9 |
359.9 |
0.0 |
| C12 |
C17 |
H3 |
C16 |
180.0 |
180.5 |
| H3 |
C17 |
C16 |
H10 |
359.7 |
0.5 |
| C02 |
C01 |
H4 |
C06 |
180.0 |
180.3 |
| H4 |
C01 |
C06 |
C05 |
179.9 |
180.3 |
| H4 |
C01 |
C06 |
C07 |
359.8 |
0.1 |
| H5 |
C03 |
C04 |
C05 |
179.8 |
180.0 |
| H5 |
C03 |
C04 |
H6 |
359.9 |
0.1 |
| C03 |
C04 |
H6 |
C05 |
180.0 |
180.0 |
| H6 |
C04 |
C03 |
H5 |
359.9 |
0.1 |
| H6 |
C04 |
C05 |
C06 |
180.2 |
180.0 |
| H6 |
C04 |
C05 |
N09 |
0.1 |
360.0 |
| C06 |
C07 |
H7 |
C08 |
180.0 |
180.1 |
| C05 |
N09 |
H8 |
C08 |
180.0 |
179.8 |
| C13 |
C14 |
H9 |
C15 |
180.0 |
180.0 |
| H9 |
C14 |
C13 |
H1 |
0.4 |
0.0 |
| H9 |
C14 |
C15 |
H2 |
359.9 |
0.0 |
| H10 |
C16 |
C17 |
H3 |
359.7 |
0.5 |
| H10 |
C16 |
C15 |
H2 |
0.1 |
359.7 |
| O18 |
C19 |
H11 |
H12 |
120.0 |
120.1 |
| O18 |
C19 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C19 |
H11 |
H13 |
120.0 |
119.9 |
| O18 |
C19 |
H12 |
H11 |
240.0 |
240.0 |
| O18 |
C19 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C19 |
H12 |
H13 |
240.0 |
240.1 |
| O18 |
C19 |
H13 |
H11 |
120.0 |
120.0 |
| O18 |
C19 |
H13 |
H12 |
240.0 |
239.9 |
| H11 |
C19 |
H13 |
H12 |
120.0 |
120.0 |