PDB Chemical Component D36

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D36

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 S 1.668 1.814
O2 S 1.423 1.421
S N1 1.541 1.655
S O1 1.458 1.421
C1 H1 1.100 1.090
C1 H1A 1.099 1.090
C1 H1B 1.100 1.090
C2 N1 1.480 1.465
N1 C4 1.400 1.393
C3 C2 1.543 1.530
C2 H2 1.100 1.090
C2 H2A 1.100 1.090
N2 C3 1.484 1.469
N2 HN2 1.000 1.009
N2 HN2A 1.000 1.009
C3 H3 1.100 1.090
C3 H3A 1.100 1.090
C7 N3 1.361 1.401
N3 C8 1.367 1.384
N3 HN3 1.000 0.970
C4 C5 1.437 1.390
C4 N8 1.348 1.323
N4 C8 1.357 1.322
N4 C9 1.339 1.330
C5 C6 1.415 1.384
C5 H5 1.080 1.081
C10 N5 1.489 1.465
N5 C9 1.339 1.363
N5 N6 1.408 1.399
C6 C7 1.408 1.393
C6 H6 1.080 1.080
N6 C17 1.354 1.303
C20 C7 1.403 1.387
C8 N7 1.372 1.330
N7 C19 1.339 1.320
N8 C20 1.355 1.320
C9 C18 1.360 1.413
C16 C10 1.536 1.505
C11 C10 1.549 1.542
C10 H10 1.100 1.090
C12 C11 1.540 1.456
C11 H11 1.100 1.090
C11 H11A 1.100 1.089
C13 C12 1.534 1.543
C12 H12 1.100 1.089
C12 H12A 1.100 1.091
C14 C13 1.545 1.504
C13 H13 1.100 1.090
C13 H13A 1.100 1.090
C14 C15 1.552 1.540
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C15 C16 1.524 1.538
C15 H15 1.100 1.091
C15 H15A 1.100 1.090
C16 H16 1.100 1.090
C16 H16A 1.100 1.089
C18 C17 1.443 1.458
C17 H17 1.080 1.080
C18 C19 1.410 1.398
C19 H19 1.080 1.080
C20 H20 1.080 1.080

Bond Angles for D36

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 S N1 113.9 104.5
C1 S O1 106.6 110.5
N1 S O1 112.8 104.3
S N1 C4 117.6 120.0
H1 C1 H1A 109.5 109.5
H1 C1 H1B 109.4 109.5
H1A C1 H1B 109.5 109.5
C2 N1 C4 119.9 120.0
N1 C4 C5 122.1 119.6
N1 C4 N8 118.0 119.6
C3 C2 H2 110.2 109.5
C3 C2 H2A 110.2 109.5
H2 C2 H2A 108.8 109.5
C3 N2 HN2 109.5 111.0
C3 N2 HN2A 109.5 111.0
N2 C3 H3 107.8 109.5
N2 C3 H3A 107.8 109.5
HN2 N2 HN2A 109.5 111.0
H3 C3 H3A 111.1 109.5
C7 N3 C8 128.6 120.0
C7 N3 HN3 115.7 120.0
C8 N3 HN3 115.7 120.0
N3 C8 N4 119.6 118.8
N3 C8 N7 120.8 118.8
C5 C4 N8 119.9 120.8
C4 C5 C6 119.9 119.2
C4 C5 H5 120.1 120.4
C4 N8 C20 120.4 121.7
C8 N4 C9 121.7 120.4
N4 C8 N7 119.6 122.4
N4 C9 N5 135.7 134.7
N4 C9 C18 119.7 118.7
C6 C5 H5 120.0 120.4
C5 C6 C7 118.4 118.4
C5 C6 H6 120.8 120.8
N6 N5 C9 112.3 109.3
N5 C9 C18 104.5 106.6
N5 N6 C17 107.1 110.1
C7 C6 H6 120.8 120.8
N6 C17 H17 127.6 126.2
C8 N7 C19 120.0 121.2
N7 C19 C18 119.8 118.6
N7 C19 H19 120.1 120.7
N8 C20 H20 118.6 119.6
C9 C18 C17 111.3 106.3
C9 C18 C19 119.2 118.7
C16 C10 H10 102.9 109.6
C11 C10 H10 107.6 109.7
C12 C11 H11 106.8 108.9
C12 C11 H11A 106.8 108.8
H11 C11 H11A 112.0 108.9
C13 C12 H12 107.8 108.9
C13 C12 H12A 107.8 108.8
H12 C12 H12A 111.1 108.9
C14 C13 H13 110.6 109.7
C14 C13 H13A 110.6 109.8
H13 C13 H13A 108.4 109.7
C15 C14 H14 108.7 108.9
C15 C14 H14A 108.6 108.9
C14 C15 C16 111.7 112.9
C14 C15 H15 108.7 108.8
C14 C15 H15A 108.7 108.8
H14 C14 H14A 110.3 108.8
C16 C15 H15 108.8 108.9
C16 C15 H15A 108.8 108.7
C15 C16 H16 109.3 108.9
C15 C16 H16A 109.2 108.9
H15 C15 H15A 110.2 108.7
H16 C16 H16A 109.7 108.9
C18 C17 H17 127.7 126.2
C18 C19 H19 120.1 120.7

Torsion Angles for D36

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 S C1 O1 125.1 248.4
C1 S N1 C4 227.8 277.2
O2 S N1 C4 104.5 33.3
C1 S N1 O1 238.3 116.0
C2 N1 S C4 182.1 180.0
S N1 C4 C5 286.2 186.0
S N1 C4 N8 106.4 5.7
C1 S O1 N1 125.7 248.3
O1 S N1 C4 349.6 161.2
H1 C1 S N1 57.9 68.4
H1 C1 S O1 292.8 180.0
H1A C1 H1 H1B 120.0 120.1
H1A C1 S N1 178.0 188.4
H1A C1 S O1 52.8 300.0
H1 C1 H1A H1B 240.0 240.0
H1B C1 S N1 298.0 308.4
H1B C1 S O1 172.9 60.0
H1 C1 H1B H1A 120.0 120.0
S N1 C2 C4 177.8 180.0
C2 N1 C4 C5 104.2 6.1
C2 N1 C4 N8 284.4 185.8
C4 N1 S O1 349.6 161.2
C5 C4 N1 N8 179.8 180.3
N1 C4 C5 C6 180.2 180.0
N1 C4 C5 H5 0.2 360.0
N1 C4 N8 C20 178.2 179.7
C3 C2 N1 C4 276.1 275.0
H2 C2 C3 H2A 120.0 120.0
H2 C2 N1 C4 36.1 35.0
C3 C2 H2 H2A 239.1 240.0
H2A C2 N1 C4 156.1 155.0
C3 C2 H2A H2 120.9 120.0
N2 C3 C2 H2 99.2 60.0
N2 C3 C2 H2A 339.1 300.0
HN2 N2 C3 HN2A 240.0 236.1
H3 C3 N2 H3A 120.0 120.1
C3 N2 HN2 HN2A 120.0 123.9
HN2 N2 C3 H3 60.0 60.1
HN2 N2 C3 H3A 300.0 300.0
C3 N2 HN2A HN2 239.9 236.1
HN2A N2 C3 H3 180.0 184.0
HN2A N2 C3 H3A 60.0 63.9
H3 C3 C2 H2 219.2 180.0
H3 C3 C2 H2A 99.1 60.0
H3 C3 N2 HN2 60.0 60.1
H3 C3 N2 HN2A 180.0 184.0
N2 C3 H3 H3A 242.1 240.0
H3A C3 C2 H2 339.2 300.0
H3A C3 C2 H2A 219.1 180.0
H3A C3 N2 HN2 300.0 300.0
H3A C3 N2 HN2A 60.0 63.9
N2 C3 H3A H3 117.9 120.1
C8 N3 C7 HN3 180.0 180.0
C7 N3 C8 N4 3.5 174.4
C7 N3 C8 N7 183.7 354.5
C7 N3 C8 HN3 180.0 180.0
N3 C8 N4 C9 180.3 180.0
N4 C8 N3 N7 179.8 179.9
N3 C8 N7 C19 180.3 180.0
C7 N3 HN3 C8 180.0 180.0
HN3 N3 C8 N4 183.4 354.4
HN3 N3 C8 N7 3.6 174.5
N1 C4 C5 N8 180.2 179.7
C5 C4 N8 C20 358.4 359.4
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 C7 1.3 0.0
C4 C5 C6 H6 181.3 180.0
N1 C4 N8 C5 179.8 180.3
N8 C4 C5 C6 360.0 0.3
N8 C4 C5 H5 180.0 180.3
C4 N8 C20 H20 182.0 180.0
N4 C8 N3 HN3 183.4 354.4
N3 C8 N4 N7 180.2 180.1
C8 N4 C9 N5 180.9 180.1
C8 N4 C9 C18 359.3 0.1
N4 C8 N7 C19 0.5 0.1
C9 N4 C8 N7 0.1 359.9
N6 N5 C9 N4 177.7 180.0
N5 C9 N4 C18 181.6 180.0
N4 C9 C18 C17 181.2 180.0
N4 C9 C18 C19 0.8 360.0
C6 C5 C4 N8 360.0 0.3
C4 C5 C6 H5 180.0 180.0
C7 C6 C5 H6 180.0 180.0
H5 C5 C4 N8 180.0 180.3
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 C7 181.3 180.0
H5 C5 C6 H6 1.3 359.9
C10 N5 C9 C18 180.3 180.0
C10 N5 N6 C17 180.4 180.0
N4 C9 N5 C18 178.6 180.0
C9 N5 N6 C17 1.3 360.0
N5 C9 C18 C17 0.1 360.0
N5 C9 C18 C19 179.6 179.9
N4 C9 N5 N6 177.7 180.0
N6 N5 C9 C18 359.2 0.0
N5 N6 C17 H17 178.9 180.0
C6 C7 N3 C8 345.7 326.8
C6 C7 N3 HN3 165.7 146.8
C7 C6 C5 H5 181.3 180.0
C5 C6 C7 H6 180.0 180.0
H6 C6 C5 H5 1.3 359.9
C5 C6 H6 C7 180.0 180.0
C17 N6 N5 C9 1.3 360.0
C9 C18 C17 N6 0.7 360.0
C18 C17 N6 H17 180.0 180.0
C20 C7 N3 HN3 347.1 326.7
C4 N8 C20 C7 2.0 0.7
C20 C7 C6 H6 179.0 180.1
N7 C8 N3 HN3 3.6 174.5
N3 C8 N7 N4 179.8 179.9
N7 C8 N4 C9 0.1 359.9
C8 N7 C19 C18 359.6 359.9
C8 N7 C19 H19 179.6 180.0
C9 C18 C19 N7 359.8 0.0
C18 C19 N7 H19 180.0 179.9
N4 C9 C18 N5 181.1 180.0
N7 C19 C18 C9 359.8 0.0
C9 C18 C17 H17 180.7 180.0
C9 C18 C19 H19 179.8 180.0
C11 C10 C16 H10 117.5 119.8
C16 C10 C11 H10 245.1 240.2
C12 C11 C10 H10 113.9 39.9
H11 C11 C12 H11A 120.0 118.5
H11 C11 C10 H10 233.9 160.6
C12 C11 H11 H11A 243.4 241.5
H11A C11 C10 H10 353.9 279.3
C12 C11 H11A H11 116.5 118.5
C13 C12 C11 H11 169.9 301.1
C13 C12 C11 H11A 49.9 182.6
H12 C12 C13 H12A 120.0 118.5
H12 C12 C11 H11 289.9 61.9
H12 C12 C11 H11A 169.9 303.4
C13 C12 H12 H12A 242.1 241.5
H12A C12 C11 H11 49.9 180.5
H12A C12 C11 H11A 289.9 62.0
C13 C12 H12A H12 117.9 118.6
C14 C13 C12 H12 328.6 159.2
C14 C13 C12 H12A 208.6 40.7
H13 C13 C14 H13A 120.0 120.6
H13 C13 C12 H12 88.6 279.0
H13 C13 C12 H12A 328.5 160.4
C14 C13 H13 H13A 238.7 239.3
H13A C13 C12 H12 208.6 39.3
H13A C13 C12 H12A 88.6 280.8
C14 C13 H13A H13 121.3 120.6
C15 C14 C13 H13 168.2 334.5
C15 C14 C13 H13A 48.1 213.9
H14 C14 C15 H14A 120.0 118.4
C16 C15 C14 H15 240.0 239.0
C16 C15 C14 H15A 120.0 120.8
C14 C15 C16 H16 149.3 197.5
C14 C15 C16 H16A 29.3 79.0
H15 C15 C14 H15A 240.0 241.7
H14 C14 C13 H13 288.2 95.3
H14 C14 C13 H13A 168.2 334.7
C15 C14 H14 H14A 241.0 241.5
H14 C14 C15 C16 317.2 197.4
H14 C14 C15 H15 77.3 318.4
H14 C14 C15 H15A 197.2 76.6
H14A C14 C13 H13 48.2 213.7
H14A C14 C13 H13A 288.1 93.1
C15 C14 H14A H14 119.0 118.5
H14A C14 C15 C16 197.3 78.9
H14A C14 C15 H15 317.3 199.9
H14A C14 C15 H15A 77.2 318.2
C15 C16 C10 H10 309.4 334.1
C16 C15 C14 H14 317.2 197.4
C16 C15 C14 H14A 197.3 78.9
C14 C15 C16 H15 120.0 120.9
C14 C15 C16 H15A 240.0 239.2
H15 C15 C16 H15A 120.0 118.2
H16 C16 C15 H16A 120.0 118.5
H15 C15 C14 H14 77.3 318.4
H15 C15 C14 H14A 317.3 199.9
C14 C15 H15 C16 238.2 236.6
C14 C15 H15 H15A 119.1 118.3
C16 C15 H15 H15A 240.9 241.8
H15 C15 C16 H16 29.3 76.6
H15 C15 C16 H16A 269.3 318.1
H15A C15 C14 H14 197.2 76.6
H15A C15 C14 H14A 77.2 318.2
C14 C15 H15A C16 121.8 123.3
C14 C15 H15A H15 240.9 241.7
C16 C15 H15A H15 119.1 118.4
H15A C15 C16 H16 269.3 318.4
H15A C15 C16 H16A 149.4 199.8
H16 C16 C10 H10 69.4 95.0
H16 C16 C15 H15 29.3 76.6
H16 C16 C15 H15A 269.3 318.4
C15 C16 H16 H16A 240.3 241.4
H16A C16 C10 H10 189.4 213.5
H16A C16 C15 H15 269.3 318.1
H16A C16 C15 H15A 149.4 199.8
C15 C16 H16A H16 119.7 118.6
N6 C17 C18 H17 180.0 180.0
N7 C19 C18 C17 179.2 180.0
C9 C18 C17 C19 179.5 179.9
N7 C19 C18 H19 180.0 180.1
C9 C18 C19 C17 180.6 180.1
C19 C18 C17 H17 1.2 0.1
N7 C19 H19 C18 180.0 179.9