PDB Chemical Component D36
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D36
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
S |
1.668 |
1.814 |
O2 |
S |
1.423 |
1.421 |
S |
N1 |
1.541 |
1.655 |
S |
O1 |
1.458 |
1.421 |
C1 |
H1 |
1.100 |
1.090 |
C1 |
H1A |
1.099 |
1.090 |
C1 |
H1B |
1.100 |
1.090 |
C2 |
N1 |
1.480 |
1.465 |
N1 |
C4 |
1.400 |
1.393 |
C3 |
C2 |
1.543 |
1.530 |
C2 |
H2 |
1.100 |
1.090 |
C2 |
H2A |
1.100 |
1.090 |
N2 |
C3 |
1.484 |
1.469 |
N2 |
HN2 |
1.000 |
1.009 |
N2 |
HN2A |
1.000 |
1.009 |
C3 |
H3 |
1.100 |
1.090 |
C3 |
H3A |
1.100 |
1.090 |
C7 |
N3 |
1.361 |
1.401 |
N3 |
C8 |
1.367 |
1.384 |
N3 |
HN3 |
1.000 |
0.970 |
C4 |
C5 |
1.437 |
1.390 |
C4 |
N8 |
1.348 |
1.323 |
N4 |
C8 |
1.357 |
1.322 |
N4 |
C9 |
1.339 |
1.330 |
C5 |
C6 |
1.415 |
1.384 |
C5 |
H5 |
1.080 |
1.081 |
C10 |
N5 |
1.489 |
1.465 |
N5 |
C9 |
1.339 |
1.363 |
N5 |
N6 |
1.408 |
1.399 |
C6 |
C7 |
1.408 |
1.393 |
C6 |
H6 |
1.080 |
1.080 |
N6 |
C17 |
1.354 |
1.303 |
C20 |
C7 |
1.403 |
1.387 |
C8 |
N7 |
1.372 |
1.330 |
N7 |
C19 |
1.339 |
1.320 |
N8 |
C20 |
1.355 |
1.320 |
C9 |
C18 |
1.360 |
1.413 |
C16 |
C10 |
1.536 |
1.505 |
C11 |
C10 |
1.549 |
1.542 |
C10 |
H10 |
1.100 |
1.090 |
C12 |
C11 |
1.540 |
1.456 |
C11 |
H11 |
1.100 |
1.090 |
C11 |
H11A |
1.100 |
1.089 |
C13 |
C12 |
1.534 |
1.543 |
C12 |
H12 |
1.100 |
1.089 |
C12 |
H12A |
1.100 |
1.091 |
C14 |
C13 |
1.545 |
1.504 |
C13 |
H13 |
1.100 |
1.090 |
C13 |
H13A |
1.100 |
1.090 |
C14 |
C15 |
1.552 |
1.540 |
C14 |
H14 |
1.100 |
1.090 |
C14 |
H14A |
1.100 |
1.090 |
C15 |
C16 |
1.524 |
1.538 |
C15 |
H15 |
1.100 |
1.091 |
C15 |
H15A |
1.100 |
1.090 |
C16 |
H16 |
1.100 |
1.090 |
C16 |
H16A |
1.100 |
1.089 |
C18 |
C17 |
1.443 |
1.458 |
C17 |
H17 |
1.080 |
1.080 |
C18 |
C19 |
1.410 |
1.398 |
C19 |
H19 |
1.080 |
1.080 |
C20 |
H20 |
1.080 |
1.080 |
Bond Angles for D36
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
S |
N1 |
113.9 |
104.5 |
C1 |
S |
O1 |
106.6 |
110.5 |
N1 |
S |
O1 |
112.8 |
104.3 |
S |
N1 |
C4 |
117.6 |
120.0 |
H1 |
C1 |
H1A |
109.5 |
109.5 |
H1 |
C1 |
H1B |
109.4 |
109.5 |
H1A |
C1 |
H1B |
109.5 |
109.5 |
C2 |
N1 |
C4 |
119.9 |
120.0 |
N1 |
C4 |
C5 |
122.1 |
119.6 |
N1 |
C4 |
N8 |
118.0 |
119.6 |
C3 |
C2 |
H2 |
110.2 |
109.5 |
C3 |
C2 |
H2A |
110.2 |
109.5 |
H2 |
C2 |
H2A |
108.8 |
109.5 |
C3 |
N2 |
HN2 |
109.5 |
111.0 |
C3 |
N2 |
HN2A |
109.5 |
111.0 |
N2 |
C3 |
H3 |
107.8 |
109.5 |
N2 |
C3 |
H3A |
107.8 |
109.5 |
HN2 |
N2 |
HN2A |
109.5 |
111.0 |
H3 |
C3 |
H3A |
111.1 |
109.5 |
C7 |
N3 |
C8 |
128.6 |
120.0 |
C7 |
N3 |
HN3 |
115.7 |
120.0 |
C8 |
N3 |
HN3 |
115.7 |
120.0 |
N3 |
C8 |
N4 |
119.6 |
118.8 |
N3 |
C8 |
N7 |
120.8 |
118.8 |
C5 |
C4 |
N8 |
119.9 |
120.8 |
C4 |
C5 |
C6 |
119.9 |
119.2 |
C4 |
C5 |
H5 |
120.1 |
120.4 |
C4 |
N8 |
C20 |
120.4 |
121.7 |
C8 |
N4 |
C9 |
121.7 |
120.4 |
N4 |
C8 |
N7 |
119.6 |
122.4 |
N4 |
C9 |
N5 |
135.7 |
134.7 |
N4 |
C9 |
C18 |
119.7 |
118.7 |
C6 |
C5 |
H5 |
120.0 |
120.4 |
C5 |
C6 |
C7 |
118.4 |
118.4 |
C5 |
C6 |
H6 |
120.8 |
120.8 |
N6 |
N5 |
C9 |
112.3 |
109.3 |
N5 |
C9 |
C18 |
104.5 |
106.6 |
N5 |
N6 |
C17 |
107.1 |
110.1 |
C7 |
C6 |
H6 |
120.8 |
120.8 |
N6 |
C17 |
H17 |
127.6 |
126.2 |
C8 |
N7 |
C19 |
120.0 |
121.2 |
N7 |
C19 |
C18 |
119.8 |
118.6 |
N7 |
C19 |
H19 |
120.1 |
120.7 |
N8 |
C20 |
H20 |
118.6 |
119.6 |
C9 |
C18 |
C17 |
111.3 |
106.3 |
C9 |
C18 |
C19 |
119.2 |
118.7 |
C16 |
C10 |
H10 |
102.9 |
109.6 |
C11 |
C10 |
H10 |
107.6 |
109.7 |
C12 |
C11 |
H11 |
106.8 |
108.9 |
C12 |
C11 |
H11A |
106.8 |
108.8 |
H11 |
C11 |
H11A |
112.0 |
108.9 |
C13 |
C12 |
H12 |
107.8 |
108.9 |
C13 |
C12 |
H12A |
107.8 |
108.8 |
H12 |
C12 |
H12A |
111.1 |
108.9 |
C14 |
C13 |
H13 |
110.6 |
109.7 |
C14 |
C13 |
H13A |
110.6 |
109.8 |
H13 |
C13 |
H13A |
108.4 |
109.7 |
C15 |
C14 |
H14 |
108.7 |
108.9 |
C15 |
C14 |
H14A |
108.6 |
108.9 |
C14 |
C15 |
C16 |
111.7 |
112.9 |
C14 |
C15 |
H15 |
108.7 |
108.8 |
C14 |
C15 |
H15A |
108.7 |
108.8 |
H14 |
C14 |
H14A |
110.3 |
108.8 |
C16 |
C15 |
H15 |
108.8 |
108.9 |
C16 |
C15 |
H15A |
108.8 |
108.7 |
C15 |
C16 |
H16 |
109.3 |
108.9 |
C15 |
C16 |
H16A |
109.2 |
108.9 |
H15 |
C15 |
H15A |
110.2 |
108.7 |
H16 |
C16 |
H16A |
109.7 |
108.9 |
C18 |
C17 |
H17 |
127.7 |
126.2 |
C18 |
C19 |
H19 |
120.1 |
120.7 |
Torsion Angles for D36
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
S |
C1 |
O1 |
125.1 |
248.4 |
C1 |
S |
N1 |
C4 |
227.8 |
277.2 |
O2 |
S |
N1 |
C4 |
104.5 |
33.3 |
C1 |
S |
N1 |
O1 |
238.3 |
116.0 |
C2 |
N1 |
S |
C4 |
182.1 |
180.0 |
S |
N1 |
C4 |
C5 |
286.2 |
186.0 |
S |
N1 |
C4 |
N8 |
106.4 |
5.7 |
C1 |
S |
O1 |
N1 |
125.7 |
248.3 |
O1 |
S |
N1 |
C4 |
349.6 |
161.2 |
H1 |
C1 |
S |
N1 |
57.9 |
68.4 |
H1 |
C1 |
S |
O1 |
292.8 |
180.0 |
H1A |
C1 |
H1 |
H1B |
120.0 |
120.1 |
H1A |
C1 |
S |
N1 |
178.0 |
188.4 |
H1A |
C1 |
S |
O1 |
52.8 |
300.0 |
H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
H1B |
C1 |
S |
N1 |
298.0 |
308.4 |
H1B |
C1 |
S |
O1 |
172.9 |
60.0 |
H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
S |
N1 |
C2 |
C4 |
177.8 |
180.0 |
C2 |
N1 |
C4 |
C5 |
104.2 |
6.1 |
C2 |
N1 |
C4 |
N8 |
284.4 |
185.8 |
C4 |
N1 |
S |
O1 |
349.6 |
161.2 |
C5 |
C4 |
N1 |
N8 |
179.8 |
180.3 |
N1 |
C4 |
C5 |
C6 |
180.2 |
180.0 |
N1 |
C4 |
C5 |
H5 |
0.2 |
360.0 |
N1 |
C4 |
N8 |
C20 |
178.2 |
179.7 |
C3 |
C2 |
N1 |
C4 |
276.1 |
275.0 |
H2 |
C2 |
C3 |
H2A |
120.0 |
120.0 |
H2 |
C2 |
N1 |
C4 |
36.1 |
35.0 |
C3 |
C2 |
H2 |
H2A |
239.1 |
240.0 |
H2A |
C2 |
N1 |
C4 |
156.1 |
155.0 |
C3 |
C2 |
H2A |
H2 |
120.9 |
120.0 |
N2 |
C3 |
C2 |
H2 |
99.2 |
60.0 |
N2 |
C3 |
C2 |
H2A |
339.1 |
300.0 |
HN2 |
N2 |
C3 |
HN2A |
240.0 |
236.1 |
H3 |
C3 |
N2 |
H3A |
120.0 |
120.1 |
C3 |
N2 |
HN2 |
HN2A |
120.0 |
123.9 |
HN2 |
N2 |
C3 |
H3 |
60.0 |
60.1 |
HN2 |
N2 |
C3 |
H3A |
300.0 |
300.0 |
C3 |
N2 |
HN2A |
HN2 |
239.9 |
236.1 |
HN2A |
N2 |
C3 |
H3 |
180.0 |
184.0 |
HN2A |
N2 |
C3 |
H3A |
60.0 |
63.9 |
H3 |
C3 |
C2 |
H2 |
219.2 |
180.0 |
H3 |
C3 |
C2 |
H2A |
99.1 |
60.0 |
H3 |
C3 |
N2 |
HN2 |
60.0 |
60.1 |
H3 |
C3 |
N2 |
HN2A |
180.0 |
184.0 |
N2 |
C3 |
H3 |
H3A |
242.1 |
240.0 |
H3A |
C3 |
C2 |
H2 |
339.2 |
300.0 |
H3A |
C3 |
C2 |
H2A |
219.1 |
180.0 |
H3A |
C3 |
N2 |
HN2 |
300.0 |
300.0 |
H3A |
C3 |
N2 |
HN2A |
60.0 |
63.9 |
N2 |
C3 |
H3A |
H3 |
117.9 |
120.1 |
C8 |
N3 |
C7 |
HN3 |
180.0 |
180.0 |
C7 |
N3 |
C8 |
N4 |
3.5 |
174.4 |
C7 |
N3 |
C8 |
N7 |
183.7 |
354.5 |
C7 |
N3 |
C8 |
HN3 |
180.0 |
180.0 |
N3 |
C8 |
N4 |
C9 |
180.3 |
180.0 |
N4 |
C8 |
N3 |
N7 |
179.8 |
179.9 |
N3 |
C8 |
N7 |
C19 |
180.3 |
180.0 |
C7 |
N3 |
HN3 |
C8 |
180.0 |
180.0 |
HN3 |
N3 |
C8 |
N4 |
183.4 |
354.4 |
HN3 |
N3 |
C8 |
N7 |
3.6 |
174.5 |
N1 |
C4 |
C5 |
N8 |
180.2 |
179.7 |
C5 |
C4 |
N8 |
C20 |
358.4 |
359.4 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C7 |
1.3 |
0.0 |
C4 |
C5 |
C6 |
H6 |
181.3 |
180.0 |
N1 |
C4 |
N8 |
C5 |
179.8 |
180.3 |
N8 |
C4 |
C5 |
C6 |
360.0 |
0.3 |
N8 |
C4 |
C5 |
H5 |
180.0 |
180.3 |
C4 |
N8 |
C20 |
H20 |
182.0 |
180.0 |
N4 |
C8 |
N3 |
HN3 |
183.4 |
354.4 |
N3 |
C8 |
N4 |
N7 |
180.2 |
180.1 |
C8 |
N4 |
C9 |
N5 |
180.9 |
180.1 |
C8 |
N4 |
C9 |
C18 |
359.3 |
0.1 |
N4 |
C8 |
N7 |
C19 |
0.5 |
0.1 |
C9 |
N4 |
C8 |
N7 |
0.1 |
359.9 |
N6 |
N5 |
C9 |
N4 |
177.7 |
180.0 |
N5 |
C9 |
N4 |
C18 |
181.6 |
180.0 |
N4 |
C9 |
C18 |
C17 |
181.2 |
180.0 |
N4 |
C9 |
C18 |
C19 |
0.8 |
360.0 |
C6 |
C5 |
C4 |
N8 |
360.0 |
0.3 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
N8 |
180.0 |
180.3 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
C7 |
181.3 |
180.0 |
H5 |
C5 |
C6 |
H6 |
1.3 |
359.9 |
C10 |
N5 |
C9 |
C18 |
180.3 |
180.0 |
C10 |
N5 |
N6 |
C17 |
180.4 |
180.0 |
N4 |
C9 |
N5 |
C18 |
178.6 |
180.0 |
C9 |
N5 |
N6 |
C17 |
1.3 |
360.0 |
N5 |
C9 |
C18 |
C17 |
0.1 |
360.0 |
N5 |
C9 |
C18 |
C19 |
179.6 |
179.9 |
N4 |
C9 |
N5 |
N6 |
177.7 |
180.0 |
N6 |
N5 |
C9 |
C18 |
359.2 |
0.0 |
N5 |
N6 |
C17 |
H17 |
178.9 |
180.0 |
C6 |
C7 |
N3 |
C8 |
345.7 |
326.8 |
C6 |
C7 |
N3 |
HN3 |
165.7 |
146.8 |
C7 |
C6 |
C5 |
H5 |
181.3 |
180.0 |
C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
1.3 |
359.9 |
C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
C17 |
N6 |
N5 |
C9 |
1.3 |
360.0 |
C9 |
C18 |
C17 |
N6 |
0.7 |
360.0 |
C18 |
C17 |
N6 |
H17 |
180.0 |
180.0 |
C20 |
C7 |
N3 |
HN3 |
347.1 |
326.7 |
C4 |
N8 |
C20 |
C7 |
2.0 |
0.7 |
C20 |
C7 |
C6 |
H6 |
179.0 |
180.1 |
N7 |
C8 |
N3 |
HN3 |
3.6 |
174.5 |
N3 |
C8 |
N7 |
N4 |
179.8 |
179.9 |
N7 |
C8 |
N4 |
C9 |
0.1 |
359.9 |
C8 |
N7 |
C19 |
C18 |
359.6 |
359.9 |
C8 |
N7 |
C19 |
H19 |
179.6 |
180.0 |
C9 |
C18 |
C19 |
N7 |
359.8 |
0.0 |
C18 |
C19 |
N7 |
H19 |
180.0 |
179.9 |
N4 |
C9 |
C18 |
N5 |
181.1 |
180.0 |
N7 |
C19 |
C18 |
C9 |
359.8 |
0.0 |
C9 |
C18 |
C17 |
H17 |
180.7 |
180.0 |
C9 |
C18 |
C19 |
H19 |
179.8 |
180.0 |
C11 |
C10 |
C16 |
H10 |
117.5 |
119.8 |
C16 |
C10 |
C11 |
H10 |
245.1 |
240.2 |
C12 |
C11 |
C10 |
H10 |
113.9 |
39.9 |
H11 |
C11 |
C12 |
H11A |
120.0 |
118.5 |
H11 |
C11 |
C10 |
H10 |
233.9 |
160.6 |
C12 |
C11 |
H11 |
H11A |
243.4 |
241.5 |
H11A |
C11 |
C10 |
H10 |
353.9 |
279.3 |
C12 |
C11 |
H11A |
H11 |
116.5 |
118.5 |
C13 |
C12 |
C11 |
H11 |
169.9 |
301.1 |
C13 |
C12 |
C11 |
H11A |
49.9 |
182.6 |
H12 |
C12 |
C13 |
H12A |
120.0 |
118.5 |
H12 |
C12 |
C11 |
H11 |
289.9 |
61.9 |
H12 |
C12 |
C11 |
H11A |
169.9 |
303.4 |
C13 |
C12 |
H12 |
H12A |
242.1 |
241.5 |
H12A |
C12 |
C11 |
H11 |
49.9 |
180.5 |
H12A |
C12 |
C11 |
H11A |
289.9 |
62.0 |
C13 |
C12 |
H12A |
H12 |
117.9 |
118.6 |
C14 |
C13 |
C12 |
H12 |
328.6 |
159.2 |
C14 |
C13 |
C12 |
H12A |
208.6 |
40.7 |
H13 |
C13 |
C14 |
H13A |
120.0 |
120.6 |
H13 |
C13 |
C12 |
H12 |
88.6 |
279.0 |
H13 |
C13 |
C12 |
H12A |
328.5 |
160.4 |
C14 |
C13 |
H13 |
H13A |
238.7 |
239.3 |
H13A |
C13 |
C12 |
H12 |
208.6 |
39.3 |
H13A |
C13 |
C12 |
H12A |
88.6 |
280.8 |
C14 |
C13 |
H13A |
H13 |
121.3 |
120.6 |
C15 |
C14 |
C13 |
H13 |
168.2 |
334.5 |
C15 |
C14 |
C13 |
H13A |
48.1 |
213.9 |
H14 |
C14 |
C15 |
H14A |
120.0 |
118.4 |
C16 |
C15 |
C14 |
H15 |
240.0 |
239.0 |
C16 |
C15 |
C14 |
H15A |
120.0 |
120.8 |
C14 |
C15 |
C16 |
H16 |
149.3 |
197.5 |
C14 |
C15 |
C16 |
H16A |
29.3 |
79.0 |
H15 |
C15 |
C14 |
H15A |
240.0 |
241.7 |
H14 |
C14 |
C13 |
H13 |
288.2 |
95.3 |
H14 |
C14 |
C13 |
H13A |
168.2 |
334.7 |
C15 |
C14 |
H14 |
H14A |
241.0 |
241.5 |
H14 |
C14 |
C15 |
C16 |
317.2 |
197.4 |
H14 |
C14 |
C15 |
H15 |
77.3 |
318.4 |
H14 |
C14 |
C15 |
H15A |
197.2 |
76.6 |
H14A |
C14 |
C13 |
H13 |
48.2 |
213.7 |
H14A |
C14 |
C13 |
H13A |
288.1 |
93.1 |
C15 |
C14 |
H14A |
H14 |
119.0 |
118.5 |
H14A |
C14 |
C15 |
C16 |
197.3 |
78.9 |
H14A |
C14 |
C15 |
H15 |
317.3 |
199.9 |
H14A |
C14 |
C15 |
H15A |
77.2 |
318.2 |
C15 |
C16 |
C10 |
H10 |
309.4 |
334.1 |
C16 |
C15 |
C14 |
H14 |
317.2 |
197.4 |
C16 |
C15 |
C14 |
H14A |
197.3 |
78.9 |
C14 |
C15 |
C16 |
H15 |
120.0 |
120.9 |
C14 |
C15 |
C16 |
H15A |
240.0 |
239.2 |
H15 |
C15 |
C16 |
H15A |
120.0 |
118.2 |
H16 |
C16 |
C15 |
H16A |
120.0 |
118.5 |
H15 |
C15 |
C14 |
H14 |
77.3 |
318.4 |
H15 |
C15 |
C14 |
H14A |
317.3 |
199.9 |
C14 |
C15 |
H15 |
C16 |
238.2 |
236.6 |
C14 |
C15 |
H15 |
H15A |
119.1 |
118.3 |
C16 |
C15 |
H15 |
H15A |
240.9 |
241.8 |
H15 |
C15 |
C16 |
H16 |
29.3 |
76.6 |
H15 |
C15 |
C16 |
H16A |
269.3 |
318.1 |
H15A |
C15 |
C14 |
H14 |
197.2 |
76.6 |
H15A |
C15 |
C14 |
H14A |
77.2 |
318.2 |
C14 |
C15 |
H15A |
C16 |
121.8 |
123.3 |
C14 |
C15 |
H15A |
H15 |
240.9 |
241.7 |
C16 |
C15 |
H15A |
H15 |
119.1 |
118.4 |
H15A |
C15 |
C16 |
H16 |
269.3 |
318.4 |
H15A |
C15 |
C16 |
H16A |
149.4 |
199.8 |
H16 |
C16 |
C10 |
H10 |
69.4 |
95.0 |
H16 |
C16 |
C15 |
H15 |
29.3 |
76.6 |
H16 |
C16 |
C15 |
H15A |
269.3 |
318.4 |
C15 |
C16 |
H16 |
H16A |
240.3 |
241.4 |
H16A |
C16 |
C10 |
H10 |
189.4 |
213.5 |
H16A |
C16 |
C15 |
H15 |
269.3 |
318.1 |
H16A |
C16 |
C15 |
H15A |
149.4 |
199.8 |
C15 |
C16 |
H16A |
H16 |
119.7 |
118.6 |
N6 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
N7 |
C19 |
C18 |
C17 |
179.2 |
180.0 |
C9 |
C18 |
C17 |
C19 |
179.5 |
179.9 |
N7 |
C19 |
C18 |
H19 |
180.0 |
180.1 |
C9 |
C18 |
C19 |
C17 |
180.6 |
180.1 |
C19 |
C18 |
C17 |
H17 |
1.2 |
0.1 |
N7 |
C19 |
H19 |
C18 |
180.0 |
179.9 |