PDB Chemical Component D33

Ideal Model

Chemical Description

Name 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-imidazole
Formula C8 H13 N2 O6 P
Formal charge 0
Molecular weight 264.172 g/mol
Component type DNA linking

Chemical features

Atom count 30
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms HO3' OP3 HOP3
Bond count 31
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-imidazole
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-imidazol-1-yl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2ccnc2
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2ccnc2
Stereo SMILES (OpenEye) c1cn(cn1)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C8H13N2O6P/c11-6-3-8(10-2-1-9-5-10)16-7(6)4-15-17(12,13)14/h1-2,5-8,11H,3-4H2,(H2,12,13,14)/t6-,7+,8+/m0/s1
InChIKey descriptor YJJFDZQLJDAGPJ-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2008-07-09
Release status REL
Model PDB code 2K69
Processing site RCSB