PDB Chemical Component D30

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D30

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C5 C2 1.389 1.394
C2 C6 1.514 1.506
C2 C1 1.396 1.376
C8 C3 1.398 1.386
C3 C1 1.393 1.395
C3 S7 1.699 1.763
C6 C12 1.518 1.527
C6 H6 1.100 1.090
C6 H6A 1.100 1.090
O1 C7 1.425 1.428
C7 C11 1.459 1.471
C7 H7 1.100 1.090
C7 H7A 1.100 1.090
C12 C9 1.525 1.534
C4 C9 1.522 1.527
C9 H9 1.100 1.090
C9 H9A 1.100 1.090
C10 C5 1.391 1.384
C10 C8 1.385 1.381
C10 H10 1.080 1.080
C20 C23 1.387 1.383
C20 C16 1.392 1.383
C20 H20 1.080 1.080
C19 C21 1.460 1.472
C21 C22 1.523 1.531
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C28 C26 1.392 1.387
C27 C26 1.393 1.387
C26 O25 1.379 1.359
C29 C27 1.392 1.381
C27 H27 1.080 1.081
C30 C28 1.388 1.381
C28 H28 1.080 1.080
C31 C29 1.397 1.383
C29 H29 1.080 1.080
C31 C30 1.389 1.382
C30 H30 1.080 1.080
C32 C31 1.505 1.507
F35 C32 1.313 1.399
F34 C32 1.322 1.400
C32 F33 1.329 1.399
O21 C17 1.226 1.209
O22 C17 1.253 1.342
C17 C14 1.514 1.507
O22 HO22 0.950 0.967
C14 O11 1.434 1.429
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
O11 C5 1.387 1.360
C8 H8 1.081 1.081
C12 H12 1.100 1.089
C12 H12A 1.100 1.090
C1 C4 1.520 1.507
C4 H4 1.100 1.090
C4 H4A 1.100 1.089
C13 S7 1.709 1.762
C16 C13 1.389 1.387
C13 C15 1.397 1.394
C16 H16 1.080 1.079
C18 C15 1.386 1.384
C15 O1 1.365 1.361
C11 C19 1.175 1.175
C22 H22 1.100 1.090
C22 H22A 1.100 1.090
C22 H22B 1.100 1.090
C23 C18 1.379 1.383
C18 H18 1.080 1.080
C24 C23 1.523 1.506
O25 C24 1.434 1.429
C24 H24 1.100 1.089
C24 H24A 1.100 1.091

Bond Angles for D30

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C2 C1 120.3 119.7
C6 C2 C1 122.1 122.6
C2 C6 C12 110.6 110.6
C2 C6 H6 109.1 109.2
C2 C6 H6A 108.9 109.2
C2 C1 C3 118.9 119.7
C2 C1 C4 122.6 122.6
C8 C3 C1 120.6 120.5
C8 C3 S7 117.9 119.7
C1 C3 S7 121.4 119.8
C3 C1 C4 118.5 117.8
C12 C6 H6 109.1 109.3
C12 C6 H6A 108.9 109.3
C6 C12 C9 112.8 108.4
C6 C12 H12 108.4 109.7
C6 C12 H12A 107.6 109.7
H6 C6 H6A 110.4 109.2
O1 C7 C11 108.4 109.5
O1 C7 H7 109.8 109.5
O1 C7 H7A 110.1 109.5
C11 C7 H7 109.8 109.5
C11 C7 H7A 110.1 109.5
C7 C11 C19 175.3 180.0
H7 C7 H7A 108.6 109.4
C12 C9 H9 108.2 109.7
C12 C9 H9A 107.3 109.6
C4 C9 H9 108.2 109.7
C4 C9 H9A 107.3 109.8
H9 C9 H9A 112.6 109.7
C5 C10 C8 119.5 119.8
C5 C10 H10 120.2 120.1
C10 C5 O11 119.9 119.7
C8 C10 H10 120.2 120.1
C10 C8 H8 120.0 120.1
C16 C20 C23 121.4 120.2
C23 C20 H20 119.3 119.9
C20 C23 C18 119.3 120.2
C16 C20 H20 119.3 119.9
C20 C16 C13 119.3 119.9
C20 C16 H16 120.3 120.0
C19 C21 C22 108.5 109.5
C19 C21 H21 109.8 109.5
C19 C21 H21A 110.0 109.5
C22 C21 H21 109.8 109.5
C22 C21 H21A 110.0 109.5
C21 C22 H22 109.5 109.5
C21 C22 H22A 109.4 109.5
C21 C22 H22B 109.4 109.5
H21 C21 H21A 108.8 109.5
C28 C26 O25 120.6 120.1
C27 C26 O25 119.9 120.1
C26 O25 C24 125.5 117.0
C29 C27 H27 120.1 120.0
C30 C28 H28 119.5 120.0
C31 C29 H29 119.9 119.9
C31 C30 H30 120.3 119.9
F35 C32 F33 108.6 109.4
O21 C17 C14 116.3 120.0
O22 C17 C14 122.6 120.0
C17 C14 O11 112.9 109.5
C17 C14 H14 108.4 109.5
C17 C14 H14A 107.6 109.5
O11 C14 H14 108.4 109.5
O11 C14 H14A 107.6 109.5
C14 O11 C5 122.3 117.0
H14 C14 H14A 112.1 109.4
H12 C12 H12A 112.1 109.8
C1 C4 H4 107.9 109.2
C1 C4 H4A 106.8 109.2
H4 C4 H4A 113.4 109.2
C16 C13 C15 119.1 119.8
C13 C15 O1 119.8 120.1
H22 C22 H22A 109.4 109.5
H22 C22 H22B 109.4 109.5
H22A C22 H22B 109.6 109.4
C23 C18 H18 120.0 120.0
O25 C24 H24 110.1 109.5
O25 C24 H24A 110.5 109.4
H24 C24 H24A 108.0 109.5

Torsion Angles for D30

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C2 C5 C1 180.3 179.7
C5 C2 C6 C12 203.7 162.5
C5 C2 C6 H6 323.7 282.7
C5 C2 C6 H6A 84.1 42.2
C5 C2 C1 C3 359.7 0.1
C5 C2 C1 C4 180.2 180.5
C5 C2 C6 C1 179.7 180.3
C6 C2 C1 C3 179.4 180.4
C6 C2 C1 C4 359.8 0.8
C12 C6 C2 H6 240.0 239.7
C12 C6 C2 H6A 119.5 120.3
C2 C6 C12 C9 308.9 51.1
C2 C6 C12 H12 68.9 170.8
C2 C6 C12 H12A 190.3 291.4
H6 C6 C2 H6A 239.5 240.6
C1 C2 C6 C12 24.0 342.2
C1 C2 C6 H6 144.0 102.5
C1 C2 C6 H6A 264.4 221.9
C8 C3 C1 C2 0.8 359.7
C2 C1 C3 S7 179.7 179.8
C3 C1 C2 C4 179.6 179.6
C2 C1 C4 H4 243.2 221.9
C2 C1 C4 H4A 121.0 102.5
C2 C1 C3 C8 0.8 359.7
C1 C3 C8 S7 179.0 180.1
C8 C3 C1 C4 180.3 179.3
C2 C1 C3 C4 180.4 180.4
C8 C3 C1 S7 181.0 179.9
C3 C1 C4 H4 63.7 42.3
C3 C1 C4 H4A 301.5 282.9
C8 C3 S7 C1 179.0 180.1
S7 C3 C1 C4 359.3 359.4
C12 C6 C2 C1 24.0 342.2
C2 C6 C12 H6 120.0 120.3
C2 C6 C12 H6A 240.5 239.7
H6 C6 C12 H6A 120.5 119.4
C6 C12 C9 H9 176.1 49.9
C6 C12 C9 H9A 297.8 170.4
H12 C12 C6 H12A 238.5 239.4
H6 C6 C2 C1 144.0 102.5
C2 C6 H6 C12 239.1 238.9
C2 C6 H6 H6A 119.6 119.4
C12 C6 H6 H6A 240.4 240.5
H6 C6 C12 C9 188.9 290.8
H6 C6 C12 H12 308.9 50.5
H6 C6 C12 H12A 70.3 171.1
H6A C6 C2 C1 264.4 221.9
C2 C6 H6A C12 120.6 121.1
C2 C6 H6A H6 240.3 240.6
C12 C6 H6A H6 119.7 119.5
H6A C6 C12 C9 68.4 171.4
H6A C6 C12 H12 188.4 291.1
H6A C6 C12 H12A 309.9 51.7
C11 C7 O1 H7 240.0 240.0
C11 C7 O1 H7A 120.5 120.0
O1 C7 C11 C19 83.6 91.1
H7 C7 O1 H7A 240.5 240.0
O1 C7 C11 H7 120.0 120.0
O1 C7 C11 H7A 239.6 240.0
H7 C7 C11 H7A 119.6 120.0
O1 C7 H7 C11 240.9 240.0
O1 C7 H7 H7A 120.4 120.0
C11 C7 H7 H7A 239.5 240.0
H7 C7 C11 C19 323.6 331.1
O1 C7 H7A C11 119.4 120.0
O1 C7 H7A H7 239.7 240.0
C11 C7 H7A H7 120.3 120.0
H7A C7 C11 C19 204.1 211.1
C9 C12 C6 H6 188.9 290.8
C9 C12 C6 H6A 68.4 171.4
C6 C12 C9 H12 120.0 119.7
C6 C12 C9 H12A 241.5 240.3
C4 C9 C12 H9 240.0 240.3
C4 C9 C12 H9A 118.3 119.8
H9 C9 C12 H9A 238.3 239.5
C2 C1 C4 C9 3.2 342.2
C3 C1 C4 C9 183.7 162.5
C12 C9 C4 H9 120.0 119.7
C12 C9 C4 H9A 241.7 240.3
H9 C9 C4 H9A 121.7 120.6
C12 C9 H9 H9A 118.4 120.5
C4 C9 H9 H9A 241.6 239.4
C12 C9 H9A H9 241.1 239.5
C4 C9 H9A H9 118.9 120.6
C10 C5 C2 C1 359.7 0.1
C8 C10 C5 H10 180.0 180.0
C5 C10 C8 H8 180.0 180.1
C14 O11 C5 C10 7.3 360.0
C10 C8 C3 C1 359.4 0.3
C10 C8 C3 S7 180.4 180.2
C5 C10 C8 H10 180.0 180.0
C8 C10 C5 O11 178.9 179.9
C5 C10 H10 C8 180.0 180.0
H10 C10 C5 O11 358.9 360.0
H10 C10 C8 H8 360.0 0.1
C16 C20 C23 H20 180.0 179.7
C23 C20 C16 C13 358.9 360.0
C23 C20 C16 H16 178.9 180.0
C20 C23 C18 H18 178.7 180.0
C23 C20 C16 H20 180.0 180.3
C16 C20 C23 C18 1.2 0.0
C20 C16 C13 C15 1.2 0.0
C16 C20 H20 C23 180.0 180.3
H20 C20 C23 C18 181.2 180.3
H20 C20 C16 C13 178.9 179.7
H20 C20 C16 H16 358.9 359.7
C7 C11 C19 C21 48.5 264.8
C22 C21 C19 H21 240.0 240.0
C22 C21 C19 H21A 120.4 120.0
C19 C21 C22 H22 68.3 300.0
C19 C21 C22 H22A 188.3 60.0
C19 C21 C22 H22B 308.4 180.0
H21 C21 C19 H21A 240.4 240.0
C19 C21 C22 H21 120.0 120.0
C19 C21 C22 H21A 239.6 240.0
H21 C21 C22 H21A 119.6 120.0
H22 C22 C21 H22A 240.0 240.0
H22 C22 C21 H22B 120.0 120.0
H22A C22 C21 H22B 239.9 240.0
C19 C21 H21 C22 240.8 240.0
C19 C21 H21 H21A 120.4 120.0
C22 C21 H21 H21A 239.6 240.0
H21 C21 C22 H22 308.3 180.0
H21 C21 C22 H22A 68.3 300.0
H21 C21 C22 H22B 188.4 60.0
C19 C21 H21A C22 119.5 120.0
C19 C21 H21A H21 239.7 240.0
C22 C21 H21A H21 120.3 120.0
H21A C21 C22 H22 188.7 60.0
H21A C21 C22 H22A 308.7 180.0
H21A C21 C22 H22B 68.7 300.0
C27 C26 C28 O25 179.6 179.8
C28 C26 O25 C24 340.1 359.8
C28 C26 C27 O25 180.4 180.2
C27 C26 O25 C24 160.4 180.0
C26 O25 C24 H24 70.8 59.9
C26 O25 C24 H24A 311.6 299.9
C29 C27 C26 O25 180.0 180.0
H27 C27 C26 O25 359.9 0.0
C30 C28 C26 O25 179.7 179.9
H28 C28 C26 O25 359.7 360.0
C31 C29 C27 H27 180.1 180.0
H29 C29 C27 H27 0.1 0.0
C31 C30 C28 H28 180.6 180.0
C30 C31 C29 H29 179.9 179.7
H30 C30 C28 H28 0.6 360.0
C32 C31 C29 H29 359.4 360.0
C32 C31 C30 H30 0.3 0.0
O22 C17 O21 C14 180.9 180.0
O21 C17 C14 O11 162.4 0.0
O21 C17 C14 H14 282.5 120.0
O21 C17 C14 H14A 43.9 240.0
O21 C17 O22 C14 179.0 180.0
O22 C17 C14 O11 341.5 180.0
O22 C17 C14 H14 101.5 300.0
O22 C17 C14 H14A 223.0 60.0
O11 C14 C17 H14 240.0 240.0
O11 C14 C17 H14A 118.6 120.0
C17 C14 O11 C5 286.4 180.0
H14 C14 C17 H14A 238.6 240.0
HO22 O22 C17 C14 180.9 180.1
C10 C5 O11 C14 7.3 360.0
C17 C14 O11 H14 120.0 120.0
C17 C14 O11 H14A 241.5 240.0
H14 C14 O11 H14A 121.4 120.0
C17 C14 H14 O11 237.2 240.0
C17 C14 H14 H14A 118.6 120.0
O11 C14 H14 H14A 241.4 240.0
H14 C14 O11 C5 166.4 60.0
C17 C14 H14A O11 121.9 120.0
C17 C14 H14A H14 241.0 240.0
O11 C14 H14A H14 119.1 120.0
H14A C14 O11 C5 45.0 300.0
O11 C5 C2 C1 181.2 180.0
O11 C5 C10 C8 178.9 179.9
O11 C5 C10 H10 358.9 360.0
C5 O11 C14 H14 166.4 60.0
C5 O11 C14 H14A 45.0 300.0
H8 C8 C3 C1 179.4 180.0
H8 C8 C3 S7 0.4 360.0
H8 C8 C10 H10 360.0 0.1
H12 C12 C6 H6 308.9 50.5
H12 C12 C6 H6A 188.4 291.1
C6 C12 H12 C9 237.3 241.1
C6 C12 H12 H12A 118.6 120.6
H12 C12 C9 H9 56.1 290.2
H12 C12 C9 H9A 177.8 50.7
H12A C12 C6 H6 70.3 171.1
H12A C12 C6 H6A 309.9 51.7
C6 C12 H12A C9 121.8 118.9
C6 C12 H12A H12 240.9 239.4
H12A C12 C9 H9 294.6 169.6
H12A C12 C9 H9A 56.3 290.1
C2 C1 C4 C3 179.6 179.6
C4 C1 C3 S7 359.3 359.4
C1 C4 C9 H9 209.6 291.4
C1 C4 C9 H9A 87.8 170.8
H4 C4 C1 H4A 122.2 119.4
H4 C4 C9 H9 329.5 51.7
H4 C4 C9 H9A 207.8 291.1
C1 C4 H4 H4A 242.0 240.6
H4A C4 C9 H9 91.7 171.1
H4A C4 C9 H9A 330.0 50.5
C1 C4 H4A H4 118.7 119.4
C20 C16 C13 S7 180.3 180.0
C13 C16 C20 C23 358.9 360.0
C13 C16 C20 H20 178.9 179.7
C20 C16 C13 H16 180.0 180.0
C16 C13 C15 O1 180.0 180.0
H16 C16 C20 C23 178.9 180.0
H16 C16 C20 H20 358.9 359.7
C20 C16 H16 C13 180.0 180.0
H16 C16 C13 C15 181.2 180.0
C20 C23 C18 C15 358.7 360.0
C15 O1 C7 C11 69.3 180.0
C15 O1 C7 H7 189.3 300.0
C15 O1 C7 H7A 308.8 59.9
C19 C11 C7 H7 323.6 331.1
C19 C11 C7 H7A 204.1 211.1
C11 C19 C21 C22 49.8 304.1
C11 C19 C21 H21 169.8 64.1
C11 C19 C21 H21A 289.4 184.1
H22 C22 C21 H21 308.3 180.0
H22 C22 C21 H21A 188.7 60.0
C21 C22 H22 H22A 120.0 120.0
C21 C22 H22 H22B 240.0 240.0
H22A C22 H22 H22B 120.1 120.0
H22A C22 C21 H21 68.3 300.0
H22A C22 C21 H21A 308.7 180.0
C21 C22 H22A H22 240.0 240.0
C21 C22 H22A H22B 120.0 120.0
H22 C22 H22A H22B 240.0 240.0
H22B C22 C21 H21 188.4 60.0
H22B C22 C21 H21A 68.7 300.0
C21 C22 H22B H22 120.0 120.0
C21 C22 H22B H22A 240.0 240.0
H22 C22 H22B H22A 120.0 120.0
C18 C23 C20 H20 181.2 180.3
C24 C23 C20 H20 359.5 0.2
C26 O25 C24 C23 190.8 180.0
C24 C23 C18 H18 0.3 0.1
H24 C24 O25 H24A 119.3 120.0
O25 C24 H24 H24A 239.2 240.0
O25 C24 H24A H24 120.5 120.0