PDB Chemical Component D2X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D2X
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAJ |
PAW |
1.608 |
1.610 |
| OAJ |
HOAJ |
0.950 |
0.967 |
| PAW |
OAZ |
1.609 |
1.609 |
| OAZ |
HOAZ |
0.950 |
0.967 |
| OAX |
PAW |
1.479 |
1.480 |
| OAV |
PAW |
1.609 |
1.610 |
| PAU |
OAV |
1.610 |
1.609 |
| PAU |
OAI |
1.610 |
1.610 |
| OAI |
HOAI |
0.950 |
0.967 |
| OAY |
PAU |
1.480 |
1.480 |
| OAT |
PAU |
1.610 |
1.610 |
| OAT |
CAS |
1.430 |
1.429 |
| CAS |
CAR |
1.529 |
1.530 |
| CAS |
HAS |
1.100 |
1.090 |
| CAS |
HASA |
1.100 |
1.091 |
| CAR |
HAR |
1.100 |
1.090 |
| CAR |
HARA |
1.100 |
1.091 |
| CAQ |
CAR |
1.530 |
1.507 |
| CAQ |
SAP |
1.742 |
1.762 |
| CAH |
CAQ |
1.390 |
1.337 |
| CAB |
CAH |
1.530 |
1.506 |
| CAB |
HAB |
1.100 |
1.089 |
| CAB |
HABA |
1.100 |
1.090 |
| CAB |
HABB |
1.100 |
1.091 |
| CAO |
SAP |
1.743 |
1.709 |
| CAO |
HAO |
1.080 |
1.080 |
| NAG |
CAH |
1.334 |
1.318 |
| NAG |
CAO |
1.335 |
1.291 |
| CAF |
NAG |
1.468 |
1.465 |
| CAF |
HAF |
1.100 |
1.090 |
| CAF |
HAFA |
1.100 |
1.090 |
| CAE |
CAF |
1.530 |
1.507 |
| CAE |
CAN |
1.390 |
1.381 |
| CAN |
HAN |
1.080 |
1.081 |
| NAM |
CAN |
1.321 |
1.325 |
| CAL |
NAM |
1.340 |
1.318 |
| CAK |
CAL |
1.531 |
1.507 |
| CAK |
HAK |
1.101 |
1.090 |
| CAK |
HAKA |
1.100 |
1.090 |
| CAK |
HAKB |
1.100 |
1.090 |
| NAC |
CAL |
1.398 |
1.318 |
| NAC |
CAD |
1.399 |
1.328 |
| CAD |
CAE |
1.389 |
1.394 |
| OAA |
CAD |
1.230 |
1.355 |
| OAA |
H19 |
0.951 |
0.967 |
Bond Angles for D2X
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| PAW |
OAJ |
HOAJ |
109.5 |
114.0 |
| OAJ |
PAW |
OAZ |
105.8 |
109.5 |
| PAW |
OAZ |
HOAZ |
109.5 |
114.0 |
| PAU |
OAI |
HOAI |
109.5 |
114.0 |
| OAT |
CAS |
CAR |
110.6 |
109.5 |
| OAT |
CAS |
HAS |
109.1 |
109.5 |
| OAT |
CAS |
HASA |
108.8 |
109.5 |
| CAR |
CAS |
HAS |
109.1 |
109.5 |
| CAR |
CAS |
HASA |
108.8 |
109.5 |
| CAS |
CAR |
HAR |
108.8 |
109.5 |
| CAS |
CAR |
HARA |
108.4 |
109.4 |
| HAS |
CAS |
HASA |
110.4 |
109.4 |
| HAR |
CAR |
HARA |
111.0 |
109.5 |
| CAQ |
CAR |
HAR |
108.8 |
109.5 |
| CAQ |
CAR |
HARA |
108.4 |
109.4 |
| CAH |
CAQ |
SAP |
106.2 |
107.9 |
| HAB |
CAB |
HABA |
109.4 |
109.5 |
| HAB |
CAB |
HABB |
109.5 |
109.4 |
| HABA |
CAB |
HABB |
109.5 |
109.4 |
| NAG |
CAO |
HAO |
126.3 |
124.9 |
| HAF |
CAF |
HAFA |
110.1 |
109.5 |
| CAE |
CAF |
HAF |
109.2 |
109.5 |
| CAE |
CAF |
HAFA |
109.0 |
109.5 |
| CAE |
CAN |
HAN |
119.1 |
120.4 |
| NAM |
CAN |
HAN |
119.2 |
120.4 |
| HAK |
CAK |
HAKA |
109.4 |
109.5 |
| HAK |
CAK |
HAKB |
109.4 |
109.5 |
| HAKA |
CAK |
HAKB |
109.5 |
109.5 |
Torsion Angles for D2X
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAJ |
PAW |
OAZ |
HOAZ |
111.9 |
300.0 |
| HOAJ |
OAJ |
PAW |
OAZ |
180.3 |
300.0 |
| OAZ |
PAW |
OAJ |
HOAJ |
180.3 |
300.0 |
| OAX |
PAW |
OAJ |
HOAJ |
304.0 |
60.0 |
| OAX |
PAW |
OAZ |
HOAZ |
348.1 |
180.0 |
| OAV |
PAW |
OAJ |
HOAJ |
67.4 |
180.0 |
| OAV |
PAW |
OAZ |
HOAZ |
224.0 |
60.0 |
| OAY |
PAU |
OAI |
HOAI |
258.1 |
180.0 |
| OAT |
PAU |
OAI |
HOAI |
134.1 |
60.0 |
| CAR |
CAS |
OAT |
HAS |
240.0 |
239.9 |
| CAR |
CAS |
OAT |
HASA |
119.5 |
120.0 |
| OAT |
CAS |
CAR |
HAR |
181.2 |
300.1 |
| OAT |
CAS |
CAR |
HARA |
302.0 |
60.0 |
| HAS |
CAS |
OAT |
HASA |
239.5 |
240.1 |
| OAT |
CAS |
CAR |
HAS |
120.0 |
120.0 |
| OAT |
CAS |
CAR |
HASA |
240.5 |
240.0 |
| HAS |
CAS |
CAR |
HASA |
120.5 |
119.9 |
| HAR |
CAR |
CAS |
HARA |
239.1 |
240.0 |
| CAQ |
CAR |
CAS |
HAR |
240.0 |
239.9 |
| CAQ |
CAR |
CAS |
HARA |
119.2 |
120.0 |
| OAT |
CAS |
HAS |
CAR |
239.1 |
239.9 |
| OAT |
CAS |
HAS |
HASA |
119.5 |
119.9 |
| CAR |
CAS |
HAS |
HASA |
240.5 |
240.0 |
| HAS |
CAS |
CAR |
HAR |
61.2 |
180.0 |
| HAS |
CAS |
CAR |
HARA |
182.0 |
300.0 |
| OAT |
CAS |
HASA |
CAR |
120.6 |
120.1 |
| OAT |
CAS |
HASA |
HAS |
240.3 |
240.0 |
| CAR |
CAS |
HASA |
HAS |
119.7 |
120.0 |
| HASA |
CAS |
CAR |
HAR |
300.7 |
60.1 |
| HASA |
CAS |
CAR |
HARA |
61.5 |
180.0 |
| HAR |
CAR |
CAS |
HAS |
61.2 |
180.0 |
| HAR |
CAR |
CAS |
HASA |
300.7 |
60.1 |
| CAS |
CAR |
HAR |
HARA |
119.2 |
120.0 |
| CAQ |
CAR |
HAR |
HARA |
240.8 |
240.0 |
| HARA |
CAR |
CAS |
HAS |
182.0 |
300.0 |
| HARA |
CAR |
CAS |
HASA |
61.5 |
180.0 |
| CAS |
CAR |
HARA |
HAR |
240.5 |
240.0 |
| CAQ |
CAR |
HARA |
HAR |
119.5 |
120.0 |
| CAQ |
CAR |
CAS |
HAS |
301.2 |
60.0 |
| CAQ |
CAR |
CAS |
HASA |
180.7 |
300.0 |
| CAS |
CAR |
CAQ |
HAR |
120.0 |
120.0 |
| CAS |
CAR |
CAQ |
HARA |
240.8 |
240.0 |
| HAR |
CAR |
CAQ |
HARA |
120.8 |
120.0 |
| SAP |
CAQ |
CAR |
HAR |
121.6 |
150.0 |
| SAP |
CAQ |
CAR |
HARA |
0.8 |
30.0 |
| CAH |
CAQ |
CAR |
HAR |
301.1 |
330.3 |
| CAH |
CAQ |
CAR |
HARA |
180.2 |
210.3 |
| CAB |
CAH |
CAQ |
SAP |
180.0 |
180.3 |
| HABA |
CAB |
HAB |
HABB |
120.0 |
119.9 |
| HAB |
CAB |
HABA |
HABB |
240.0 |
240.1 |
| HAB |
CAB |
HABB |
HABA |
120.0 |
119.9 |
| CAF |
NAG |
CAO |
HAO |
0.9 |
0.0 |
| CAE |
CAF |
HAF |
HAFA |
240.3 |
239.9 |
| CAE |
CAF |
HAFA |
HAF |
119.8 |
120.0 |
| HAF |
CAF |
CAE |
HAFA |
120.3 |
120.1 |
| CAN |
CAE |
CAF |
HAF |
241.0 |
145.0 |
| CAN |
CAE |
CAF |
HAFA |
120.7 |
24.9 |
| NAM |
CAN |
CAE |
HAN |
180.0 |
179.9 |
| CAE |
CAN |
NAM |
HAN |
180.0 |
180.1 |
| CAL |
NAM |
CAN |
HAN |
180.2 |
180.0 |
| HAKA |
CAK |
HAK |
HAKB |
120.0 |
120.0 |
| HAK |
CAK |
HAKA |
HAKB |
240.0 |
240.0 |
| HAK |
CAK |
HAKB |
HAKA |
120.0 |
120.0 |
| CAD |
CAE |
CAF |
HAF |
61.6 |
324.8 |
| CAD |
CAE |
CAF |
HAFA |
301.3 |
204.7 |
| CAD |
CAE |
CAN |
HAN |
180.0 |
180.2 |