PDB Chemical Component D2U

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D2U

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C40	C39	1.394	1.388
C40	C41	1.390	1.366
C39	C38	1.389	1.378
C41	C37	1.402	1.396
C38	C36	1.404	1.391
C37	C36	1.382	1.407
C37	C33	1.406	1.465
O42	C31	1.257	1.208
C36	N35	1.340	1.377
C32	C33	1.534	1.507
C32	C30	1.534	1.530
C33	C34	1.392	1.342
C31	C30	1.529	1.507
C31	O43	1.261	1.343
N35	C34	1.322	1.368
C30	N29	1.456	1.466
N29	C27	1.456	1.348
O28	C27	1.188	1.212
C27	C11	1.530	1.507
C7	C1	1.524	1.507
C2	C1	1.384	1.380
C2	C3	1.390	1.396
O26	C9	1.187	1.216
C1	C6	1.382	1.384
C11	N10	1.453	1.465
C11	C12	1.533	1.529
C9	N10	1.462	1.348
C9	C3	1.537	1.478
N10	C25	1.451	1.465
C3	C4	1.383	1.396
C6	C5	1.386	1.383
C12	C13	1.536	1.507
C4	C5	1.388	1.379
C5	C8	1.520	1.508
C13	C14	1.387	1.383
C13	C18	1.383	1.383
C14	C15	1.386	1.380
C18	C17	1.384	1.380
C15	C16	1.388	1.393
C17	C16	1.384	1.394
C16	C19	1.535	1.484
C19	C24	1.388	1.393
C19	C20	1.386	1.394
C24	C23	1.389	1.380
C20	C21	1.385	1.381
C23	C22	1.382	1.384
C21	C22	1.384	1.383
C2	H1	1.080	1.079
C4	H2	1.080	1.080
C6	H3	1.080	1.080
C7	H4	1.100	1.090
C7	H5	1.100	1.090
C7	H6	1.100	1.090
C8	H7	1.100	1.090
C8	H8	1.100	1.090
C8	H9	1.100	1.090
C11	H10	1.100	1.090
C12	H11	1.100	1.090
C12	H12	1.100	1.091
C14	H13	1.080	1.081
C15	H14	1.080	1.081
C17	H15	1.080	1.080
C18	H16	1.080	1.080
C20	H17	1.080	1.080
C21	H18	1.080	1.080
C22	H19	1.080	1.080
C23	H20	1.079	1.081
C24	H21	1.080	1.081
C25	H22	1.100	1.090
C25	H23	1.100	1.090
C25	H24	1.100	1.090
N29	H25	1.000	0.969
C30	H26	1.100	1.090
C32	H27	1.100	1.090
C32	H28	1.100	1.090
C34	H29	1.080	1.080
N35	H30	1.000	0.971
C38	H31	1.080	1.080
C39	H32	1.080	1.080
C40	H33	1.080	1.081
C41	H34	1.080	1.080
O43	H35	0.950	0.967

Bond Angles for D2U

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C40	C39	H32	120.0	119.7
C41	C40	H33	119.8	119.7
C40	C41	H34	120.3	120.1
C39	C38	H31	120.0	120.1
O42	C31	O43	120.4	120.0
C36	N35	H30	125.0	125.0
C32	C33	C34	128.0	126.5
C33	C32	H27	108.9	109.5
C33	C32	H28	108.8	109.5
C32	C30	H26	108.4	109.5
C33	C34	H29	125.6	125.0
C31	C30	H26	108.4	109.4
C31	O43	H35	109.5	117.0
N35	C34	H29	125.6	125.0
C30	N29	H25	119.1	119.9
C27	C11	H10	105.3	109.4
C2	C1	C6	119.9	120.1
C2	C3	C4	119.4	119.7
C3	C2	H1	119.7	120.0
C1	C6	C5	119.7	120.3
C1	C6	H3	120.2	119.8
C11	N10	C25	118.1	120.0
C11	C12	C13	112.7	109.5
C12	C11	H10	105.3	109.5
C11	C12	H11	108.6	109.5
C11	C12	H12	108.7	109.5
C9	N10	C25	122.7	120.0
N10	C25	H22	109.5	109.4
N10	C25	H23	109.5	109.5
N10	C25	H24	109.5	109.4
C3	C4	C5	120.0	119.9
C3	C4	H2	120.0	120.0
C6	C5	C8	119.6	119.9
C12	C13	C14	120.5	119.9
C12	C13	C18	119.0	119.9
C13	C12	H11	108.7	109.4
C13	C12	H12	108.6	109.5
C4	C5	C8	119.9	119.9
C5	C4	H2	120.0	120.2
C5	C8	H7	109.5	109.5
C5	C8	H8	109.5	109.4
C5	C8	H9	109.5	109.4
C14	C13	C18	120.5	120.2
C13	C14	C15	119.4	120.2
C13	C14	H13	120.3	119.9
C13	C18	C17	120.0	120.1
C13	C18	H16	120.0	119.9
C14	C15	C16	120.2	119.9
C15	C14	H13	120.3	119.9
C14	C15	H14	119.9	120.1
C18	C17	H15	120.1	120.1
C15	C16	C19	120.5	120.1
C16	C15	H14	119.9	120.1
C17	C16	C19	119.4	120.1
C16	C19	C24	120.7	120.1
C16	C19	C20	119.4	120.1
C20	C19	C24	119.9	119.8
C19	C24	C23	119.8	119.9
C19	C24	H21	120.1	120.1
C19	C20	C21	120.2	119.9
C19	C20	H17	119.9	120.1
C24	C23	H20	119.9	120.0
C20	C21	C22	119.9	120.1
C21	C20	H17	119.9	120.1
C20	C21	H18	120.0	119.9
C23	C22	H19	119.9	119.9
C22	C21	H18	120.0	120.0
C21	C22	H19	119.9	119.9
H4	C7	H5	109.5	109.5
H4	C7	H6	109.5	109.5
H5	C7	H6	109.5	109.5
H7	C8	H8	109.5	109.5
H7	C8	H9	109.5	109.5
H8	C8	H9	109.5	109.5
H11	C12	H12	109.5	109.5
H22	C25	H23	109.4	109.5
H22	C25	H24	109.5	109.5
H23	C25	H24	109.5	109.5
H27	C32	H28	109.5	109.5

Torsion Angles for D2U

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C40	C39	C38	H31	180.4	180.1
C41	C40	C39	H32	179.5	179.7
C38	C36	N35	H30	359.9	0.1
C37	C36	N35	H30	180.1	179.8
C37	C33	C32	H27	293.3	324.7
C37	C33	C32	H28	52.6	204.7
C37	C33	C34	H29	180.2	180.2
O42	C31	C30	H26	25.3	240.0
O42	C31	O43	H35	360.0	0.0
C36	N35	C34	H29	179.8	180.0
C33	C32	C30	H26	46.9	55.0
C32	C33	C34	H29	359.6	360.0
H27	C32	C33	H28	240.7	120.0
C31	C30	C32	H26	119.9	120.0
C32	C30	N29	H25	304.4	335.0
C34	C33	C32	H27	114.1	145.0
C34	C33	C32	H28	233.4	25.0
N35	C34	C33	H29	180.0	180.0
C32	C30	C31	H26	240.2	239.9
C31	C30	N29	H25	67.6	95.0
O43	C31	C30	H26	206.0	60.1
C33	C34	N35	H29	180.0	180.0
N29	C27	C11	H10	59.1	319.9
O28	C27	C11	H10	238.4	139.9
C12	C11	C27	H10	114.9	120.0
C27	C11	C12	H11	298.0	305.0
C27	C11	C12	H12	57.0	65.0
C7	C1	C6	H3	0.1	0.3
C2	C1	C6	C5	0.1	360.0
C2	C1	C6	H3	180.1	180.0
C3	C2	C1	C6	359.3	360.0
C2	C3	C4	C5	358.7	360.0
C2	C3	C4	H2	178.7	180.0
C1	C6	C5	C8	180.2	180.0
C9	N10	C11	C25	177.9	180.0
C11	N10	C25	H22	180.0	247.6
C11	N10	C25	H23	300.0	7.5
C11	N10	C25	H24	60.0	127.6
C27	C11	C12	H10	245.1	240.0
C12	C11	N10	C25	48.6	55.0
C11	C12	C13	C14	42.7	90.0
C11	C12	C13	C18	223.4	269.7
C13	C12	C11	H11	239.5	240.0
C13	C12	C11	H12	120.5	120.0
H11	C12	C11	H12	241.0	240.0
C11	N10	C9	C25	182.2	180.0
C9	N10	C25	H22	2.2	67.6
C9	N10	C25	H23	122.2	187.6
C9	N10	C25	H24	242.2	307.6
C9	C3	C2	H1	359.4	359.9
C9	C3	C4	H2	0.6	0.0
H22	C25	N10	H23	240.0	240.0
H22	C25	N10	H24	120.0	120.0
H23	C25	N10	H24	240.0	240.0
C4	C3	C2	H1	181.3	180.0
C3	C4	C5	C8	180.4	180.0
C5	C4	C3	H2	180.0	180.0
C1	C6	C5	H3	180.0	180.0
C4	C5	C6	C8	179.7	180.0
C6	C5	C4	H2	180.7	180.0
C6	C5	C8	H7	89.9	270.0
C6	C5	C8	H8	209.9	30.0
C6	C5	C8	H9	329.9	150.0
C13	C12	C11	H10	292.4	305.0
C11	C12	C13	H11	120.5	120.0
C11	C12	C13	H12	239.5	240.0
C14	C13	C12	C18	179.3	180.3
C12	C13	C14	C15	180.2	180.0
C12	C13	C14	H13	0.2	359.9
C12	C13	C18	C17	179.8	179.8
C12	C13	C18	H16	359.8	0.1
H11	C12	C13	H12	119.0	120.0
C1	C6	C5	C4	359.9	0.0
C3	C4	C5	H2	180.0	180.0
C6	C5	C4	C8	180.3	180.0
C4	C5	C8	H7	270.1	90.0
C4	C5	C8	H8	30.1	210.0
C4	C5	C8	H9	150.1	329.9
C8	C5	C4	H2	0.4	0.0
H7	C8	C5	H8	240.0	240.0
H7	C8	C5	H9	120.0	120.0
H8	C8	C5	H9	240.0	240.1
C12	C13	C14	C18	180.7	179.7
C14	C13	C12	H11	282.2	330.0
C14	C13	C12	H12	163.1	210.0
C14	C13	C18	C17	0.5	359.5
C14	C13	C18	H16	180.5	179.8
C13	C14	C15	C16	0.2	360.0
C15	C14	C13	H13	180.0	180.1
C13	C14	C15	H14	180.2	180.0
C12	C13	C18	C14	179.3	180.3
C18	C13	C12	H11	102.9	149.7
C18	C13	C12	H12	343.9	29.7
C18	C13	C14	C15	359.5	0.3
C18	C13	C14	H13	179.5	180.2
C13	C18	C17	H15	179.8	180.3
C15	C14	C13	C18	359.5	0.3
C13	C14	C15	H13	180.0	179.9
C14	C15	C16	C19	179.5	180.0
C16	C15	C14	H14	180.0	180.0
C13	C18	C17	H16	180.0	180.3
C18	C17	C16	C19	180.5	179.8
C16	C15	C14	H13	180.2	180.0
C14	C15	C16	H14	180.0	180.0
C17	C16	C15	C19	180.6	180.0
C15	C16	C19	C24	32.4	180.0
C15	C16	C19	C20	212.8	0.3
C13	C18	C17	C16	359.8	0.5
C15	C16	C17	C19	179.4	180.0
C17	C16	C15	H14	180.1	180.0
C17	C16	C19	C24	211.9	360.0
C17	C16	C19	C20	32.2	180.3
C19	C16	C15	H14	359.5	360.0
C20	C19	C16	C24	180.3	180.3
C16	C19	C24	C23	180.2	179.7
C16	C19	C24	H21	0.3	0.0
C16	C19	C20	C21	179.8	180.0
C16	C19	C20	H17	359.8	359.9
C16	C19	C24	C20	180.3	180.3
C24	C19	C20	C21	0.1	0.3
C24	C19	C20	H17	180.1	180.2
C19	C24	C23	H20	180.1	180.3
C16	C19	C20	C24	179.7	179.7
C20	C19	C24	C23	359.9	359.4
C20	C19	C24	H21	180.0	179.7
C19	C20	C21	C22	359.9	360.0
C21	C20	C19	H17	180.0	180.0
C19	C20	C21	H18	179.9	180.0
C19	C24	C23	H21	180.0	180.3
C24	C23	C22	H19	179.9	179.7
C21	C20	C19	C24	0.1	0.3
C19	C20	C21	H17	180.0	180.0
C22	C21	C20	H18	180.0	180.0
C20	C21	C22	H19	180.1	180.0
C19	C24	C23	C22	0.1	0.6
C23	C22	C21	H18	180.1	180.0
C21	C22	C23	H19	180.0	179.9
C22	C21	C20	H17	179.9	180.0
C20	C21	C22	H18	180.0	180.0
C23	C22	C21	H19	180.0	180.1
H1	C2	C1	C6	179.3	180.0
H1	C2	C3	C4	181.3	180.0
C3	C4	H2	C5	180.0	180.0
H2	C4	C5	C8	0.4	0.0
C1	C6	H3	C5	180.0	180.0
H3	C6	C5	C8	0.1	360.0
H5	C7	H4	H6	120.0	120.1
H4	C7	H5	H6	240.0	239.9
H4	C7	H6	H5	120.0	120.0
C5	C8	H7	H8	120.0	120.0
C5	C8	H7	H9	240.0	240.0
H8	C8	H7	H9	120.0	120.0
C5	C8	H8	H7	240.0	240.0
C5	C8	H8	H9	120.0	119.9
H7	C8	H8	H9	240.0	240.0
C5	C8	H9	H7	120.0	120.0
C5	C8	H9	H8	240.0	240.1
H7	C8	H9	H8	120.0	120.1
H10	C11	N10	C25	165.3	175.0
H10	C11	C12	C13	292.4	305.0
H10	C11	C12	H11	52.9	65.0
H10	C11	C12	H12	171.9	185.0
C11	C12	H11	C13	237.0	240.0
H11	C12	C11	H10	52.9	65.0
C11	C12	H11	H12	118.5	120.0
H11	C12	C13	C14	282.2	330.0
H11	C12	C13	C18	102.9	149.7
C13	C12	H11	H12	241.5	240.0
C11	C12	H12	C13	123.0	120.0
H12	C12	C11	H10	171.9	185.0
C11	C12	H12	H11	241.5	240.0
H12	C12	C13	C14	163.1	210.0
H12	C12	C13	C18	343.9	29.7
C13	C12	H12	H11	118.5	120.0
H13	C14	C13	C18	179.5	180.2
C13	C14	H13	C15	180.0	180.1
H13	C14	C15	C16	180.2	180.0
H13	C14	C15	H14	0.2	0.0
C14	C15	H14	C16	180.0	180.0
H14	C15	C14	H13	0.2	0.0
H14	C15	C16	C19	359.5	360.0
H15	C17	C16	C19	0.5	360.0
C13	C18	H16	C17	180.0	179.7
H16	C18	C17	H15	359.8	0.0
H17	C20	C19	C24	180.1	180.2
C19	C20	H17	C21	180.0	180.0
H17	C20	C21	C22	179.9	180.0
H17	C20	C21	H18	359.9	0.1
C20	C21	H18	C22	180.0	180.0
H18	C21	C20	H17	359.9	0.1
H18	C21	C22	H19	0.1	359.9
H19	C22	C21	H18	0.1	359.9
H20	C23	C22	H19	359.9	0.1
C19	C24	H21	C23	180.0	179.7
H21	C24	C23	H20	0.0	360.0
N10	C25	H22	H23	120.0	120.0
N10	C25	H22	H24	240.0	240.0
H23	C25	H22	H24	120.0	120.1
N10	C25	H23	H22	240.0	240.0
N10	C25	H23	H24	120.0	120.0
H22	C25	H23	H24	240.0	240.0
N10	C25	H24	H22	120.1	120.0
N10	C25	H24	H23	240.0	240.0
H22	C25	H24	H23	119.9	120.0
H26	C30	N29	H25	184.7	215.0
H27	C32	C33	C34	114.1	145.0
C33	C32	H27	H28	118.9	240.0
H27	C32	C30	H26	286.5	175.0
H28	C32	C33	C34	233.4	25.0
C33	C32	H28	H27	241.1	120.0
H28	C32	C30	H26	167.2	295.0
H30	N35	C34	H29	359.8	360.0
H32	C39	C38	H31	0.4	359.9
H33	C40	C39	H32	359.5	0.1
H33	C40	C41	H34	0.5	359.7
H34	C41	C40	H33	0.5	359.7