PDB Chemical Component D2N

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D2N

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N1 1.342 1.329
N1 C6 1.343 1.326
N3 C2 1.341 1.320
NAD C2 1.348 1.382
N3 C4 1.344 1.341
NAR C4 1.350 1.334
C4 C5 1.389 1.416
C5 CBB 1.406 1.400
C5 C6 1.420 1.416
C6 NAE 1.345 1.378
CAA CAK 1.538 1.529
CAA HAA 1.100 1.089
CAA HAAA 1.100 1.090
CAA HAAB 1.099 1.091
OAU CAB 1.431 1.429
CAB HAB 1.099 1.090
CAB HABA 1.100 1.089
CAB HABB 1.100 1.090
CBB CAC 1.546 1.507
CAC HAC 1.100 1.089
CAC HACA 1.100 1.089
CAC HACB 1.100 1.091
NAD HNAD 1.000 0.970
NAD HNAA 1.000 0.970
NAE HNAE 1.000 0.970
NAE HNAB 0.999 0.969
OAF CAX 1.228 1.208
CAH CAG 1.386 1.381
CAG CAZ 1.382 1.387
CAG HAG 1.080 1.080
CAH CBE 1.387 1.387
CAH HAH 1.080 1.080
NAR CAI 1.335 1.314
CAI CBC 1.393 1.389
CAI HAI 1.080 1.080
CAZ CAJ 1.409 1.387
CBD CAJ 1.401 1.381
CAJ HAJ 1.080 1.080
OAV CAK 1.451 1.452
CAK HAK 1.100 1.090
CAK HAKA 1.100 1.090
CAM CAL 1.530 1.529
CAN CAL 1.533 1.531
CAL HAL 1.100 1.091
CAL HALA 1.100 1.090
CAM CAO 1.517 1.530
CAM HAM 1.100 1.090
CAM HAMA 1.100 1.091
CAP CAN 1.526 1.530
CAN HAN 1.101 1.090
CAN HANA 1.100 1.090
CAO OAW 1.438 1.430
CAO HAO 1.100 1.090
CAO HAOA 1.100 1.090
CAP CAX 1.532 1.507
CAP HAP 1.100 1.090
CAP HAPA 1.100 1.090
CBD CAQ 1.555 1.507
CBC CAQ 1.562 1.507
CAQ HAQ 1.100 1.091
CAQ HAQA 1.100 1.090
OAU CBE 1.351 1.360
CAX OAV 1.366 1.342
CAZ OAW 1.367 1.359
CBC CBB 1.399 1.370
CBE CBD 1.398 1.387

Bond Angles for D2N

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.0 121.2
N1 C6 C5 120.3 118.3
N1 C6 NAE 114.4 120.8
N3 C4 C5 121.7 118.6
C4 C5 CBB 117.8 119.3
C4 C5 C6 115.8 118.6
C6 C5 CBB 126.3 122.1
C5 CBB CAC 124.5 121.0
C5 C6 NAE 125.3 120.9
C6 NAE HNAE 109.5 120.0
C6 NAE HNAB 109.5 120.0
CAK CAA HAA 109.5 109.5
CAK CAA HAAA 109.5 109.5
CAK CAA HAAB 109.4 109.5
CAA CAK HAK 108.1 109.5
CAA CAK HAKA 108.1 109.5
HAA CAA HAAA 109.5 109.5
HAA CAA HAAB 109.5 109.5
HAAA CAA HAAB 109.5 109.4
OAU CAB HAB 109.5 109.5
OAU CAB HABA 109.4 109.5
OAU CAB HABB 109.5 109.5
HAB CAB HABA 109.4 109.4
HAB CAB HABB 109.5 109.5
HABA CAB HABB 109.5 109.5
CBB CAC HAC 109.5 109.5
CBB CAC HACA 109.5 109.5
CBB CAC HACB 109.5 109.4
HAC CAC HACA 109.4 109.5
HAC CAC HACB 109.4 109.5
HACA CAC HACB 109.5 109.5
HNAD NAD HNAA 109.5 120.0
HNAE NAE HNAB 109.5 120.0
OAF CAX CAP 119.8 120.0
OAF CAX OAV 118.4 120.0
CAH CAG CAZ 120.3 120.0
CAH CAG HAG 119.8 120.0
CAZ CAG HAG 119.8 120.0
CAG CAZ CAJ 120.5 120.0
CAG CAZ OAW 116.5 120.0
CBE CAH HAH 120.3 120.0
CAH CBE OAU 118.2 120.1
CAH CBE CBD 121.8 120.0
NAR CAI CBC 121.7 121.8
NAR CAI HAI 119.2 119.1
CBC CAI HAI 119.1 119.1
CAI CBC CAQ 119.0 120.1
CAI CBC CBB 119.3 119.9
CAZ CAJ HAJ 120.2 120.0
CBD CAJ HAJ 120.2 120.0
OAV CAK HAK 108.1 109.5
OAV CAK HAKA 108.1 109.4
HAK CAK HAKA 110.8 109.5
CAM CAL HAL 109.8 109.5
CAM CAL HALA 109.8 109.5
CAN CAL HAL 109.9 109.5
CAN CAL HALA 109.9 109.4
HAL CAL HALA 109.1 109.5
CAO CAM HAM 108.9 109.4
CAO CAM HAMA 108.9 109.5
CAM CAO OAW 105.4 109.5
CAM CAO HAO 110.9 109.5
CAM CAO HAOA 110.9 109.5
HAM CAM HAMA 110.0 109.5
CAP CAN HAN 109.0 109.5
CAP CAN HANA 108.9 109.5
HAN CAN HANA 110.0 109.5
OAW CAO HAO 110.9 109.4
OAW CAO HAOA 110.9 109.4
HAO CAO HAOA 108.0 109.5
CAX CAP HAP 109.0 109.5
CAX CAP HAPA 109.1 109.4
CAP CAX OAV 121.8 120.0
HAP CAP HAPA 109.9 109.5
CBD CAQ HAQ 107.7 109.5
CBD CAQ HAQA 107.6 109.5
CBC CAQ HAQ 107.6 109.4
CBC CAQ HAQA 107.7 109.5
HAQ CAQ HAQA 111.2 109.5
OAU CBE CBD 120.0 120.0

Torsion Angles for D2N

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 2.9 359.9
C2 N1 C6 NAE 181.1 180.0
C4 C5 C6 N1 356.3 0.1
N1 C6 C5 CBB 179.1 180.0
C5 C6 N1 NAE 181.7 180.0
N1 C6 NAE HNAE 360.0 138.7
N1 C6 NAE HNAB 120.0 318.8
N3 C2 N1 C6 358.2 0.1
N3 C4 C5 CBB 181.1 180.0
N3 C4 C5 C6 3.7 359.9
NAR C4 C5 CBB 359.4 0.1
N1 C6 C5 C4 356.3 0.1
C6 C5 C4 CBB 182.6 180.0
C4 C5 CBB CAC 181.3 180.0
C4 C5 C6 NAE 178.3 180.0
C4 C5 CBB C6 182.9 180.0
CBB C5 C6 NAE 1.1 360.0
C5 CBB CAC HAC 89.9 82.8
C5 CBB CAC HACA 209.9 202.8
C5 CBB CAC HACB 329.9 322.8
CAI CBC CBB C5 0.0 0.0
N1 C6 C5 NAE 178.1 180.0
C4 C5 C6 CBB 177.2 180.0
C6 C5 CBB CAC 358.4 0.1
C5 C6 NAE HNAE 178.1 318.8
C5 C6 NAE HNAB 298.2 138.8
N1 C6 NAE C5 181.8 180.0
NAE C6 C5 CBB 1.1 360.0
HNAE NAE C6 HNAB 240.0 180.0
HAA CAA CAK HAAA 240.0 240.0
HAA CAA CAK HAAB 120.0 120.0
HAAA CAA CAK HAAB 240.0 240.1
OAV CAK CAA HAK 240.0 239.9
OAV CAK CAA HAKA 120.0 120.0
HAK CAK CAA HAKA 240.0 240.0
CAK CAA HAA HAAA 120.0 120.1
CAK CAA HAA HAAB 240.0 240.0
HAA CAA CAK HAK 300.0 180.0
HAA CAA CAK HAKA 60.0 300.0
HAAA CAA HAA HAAB 120.0 119.9
CAK CAA HAAA HAA 240.0 239.9
CAK CAA HAAA HAAB 120.0 120.0
HAAA CAA CAK HAK 60.0 300.1
HAAA CAA CAK HAKA 180.0 60.0
HAA CAA HAAA HAAB 240.0 240.0
CAK CAA HAAB HAA 120.0 120.0
CAK CAA HAAB HAAA 240.0 240.0
HAAB CAA CAK HAK 180.0 60.0
HAAB CAA CAK HAKA 300.0 180.0
HAA CAA HAAB HAAA 120.0 120.0
HAB CAB OAU HABA 240.0 240.1
HAB CAB OAU HABB 120.0 120.0
HABA CAB OAU HABB 240.0 240.0
OAU CAB HAB HABA 120.0 120.0
OAU CAB HAB HABB 240.0 240.0
HABA CAB HAB HABB 120.0 120.0
OAU CAB HABA HAB 240.0 240.0
OAU CAB HABA HABB 120.0 120.0
HAB CAB HABA HABB 240.0 240.0
OAU CAB HABB HAB 120.0 120.0
OAU CAB HABB HABA 240.0 240.0
HAB CAB HABB HABA 120.0 120.0
HAC CAC CBB HACA 240.0 239.9
HAC CAC CBB HACB 120.0 120.0
HACA CAC CBB HACB 240.0 240.1
CBB CAC HAC HACA 120.0 120.0
CBB CAC HAC HACB 240.0 240.0
HACA CAC HAC HACB 119.9 120.0
CBB CAC HACA HAC 240.0 239.9
CBB CAC HACA HACB 120.0 119.9
HAC CAC HACA HACB 240.1 240.0
CBB CAC HACB HAC 120.0 120.0
CBB CAC HACB HACA 240.0 240.0
HAC CAC HACB HACA 119.9 120.0
C6 NAE HNAE HNAB 120.0 180.0
C6 NAE HNAB HNAE 240.0 180.0
OAF CAX CAP HAP 337.3 240.0
OAF CAX CAP HAPA 217.3 120.0
CAP CAX OAF OAV 182.5 180.1
CAZ CAG CAH HAG 180.0 180.3
CAH CAG CAZ CAJ 359.9 359.7
CAH CAG CAZ OAW 180.5 179.7
CAH CAG CAZ HAG 180.0 179.7
CAG CAZ CAJ HAJ 180.3 180.0
CAH CAG HAG CAZ 180.0 180.3
HAG CAG CAZ CAJ 180.0 180.0
HAG CAG CAZ OAW 0.5 0.0
CBE CAH CAG CAZ 0.2 0.1
CBE CAH CAG HAG 180.1 179.8
OAU CBE CAH CBD 180.5 180.0
HAH CAH CAG CAZ 180.2 180.0
HAH CAH CAG HAG 0.1 359.7
HAH CAH CBE OAU 359.9 0.0
HAH CAH CBE CBD 179.5 180.0
CBC CAI NAR HAI 180.0 180.1
NAR CAI CBC CAQ 178.6 180.0
NAR CAI CBC CBB 358.3 359.9
NAR CAI CBC HAI 180.0 179.9
CAI CBC CAQ HAQ 245.5 25.0
CAI CBC CAQ HAQA 125.5 145.0
NAR CAI HAI CBC 180.0 180.1
HAI CAI CBC CAQ 358.6 0.1
HAI CAI CBC CBB 178.3 180.0
CAJ CAZ CAG HAG 180.0 180.0
CAG CAZ CAJ OAW 180.6 180.0
CBD CAJ CAZ HAJ 180.0 180.5
CAH CBE CBD CAJ 0.8 0.3
CAZ CAJ CBD HAJ 180.0 179.5
OAV CAK CAA HAA 180.0 60.0
OAV CAK CAA HAAA 300.0 180.0
OAV CAK CAA HAAB 60.0 299.9
CAA CAK OAV HAK 120.0 120.0
CAA CAK OAV HAKA 240.0 240.0
OAF CAX OAV CAK 330.6 0.1
HAK CAK OAV HAKA 120.0 120.0
HAK CAK CAA HAA 300.0 180.0
HAK CAK CAA HAAA 60.0 300.1
HAK CAK CAA HAAB 180.0 60.0
CAA CAK HAK HAKA 118.3 120.0
OAV CAK HAK HAKA 241.7 240.0
HAKA CAK CAA HAA 60.0 300.0
HAKA CAK CAA HAAA 180.0 60.0
HAKA CAK CAA HAAB 300.0 180.0
CAA CAK HAKA HAK 241.7 240.0
OAV CAK HAKA HAK 118.3 120.0
CAN CAL CAM HAL 240.0 240.0
CAN CAL CAM HALA 120.0 120.0
HAL CAL CAM HALA 240.0 240.0
CAM CAL CAN HAL 120.0 120.0
CAM CAL CAN HALA 240.0 240.0
HAL CAL CAN HALA 120.0 120.0
CAM CAL HAL HALA 120.5 120.0
CAN CAL HAL HALA 239.5 240.1
CAM CAL HALA HAL 239.5 240.0
CAN CAL HALA HAL 120.5 120.0
CAO CAM CAL HAL 350.0 300.0
CAO CAM CAL HALA 110.0 60.0
HAM CAM CAO HAMA 120.0 120.0
OAW CAO CAM HAO 240.0 240.0
OAW CAO CAM HAOA 120.0 120.0
HAO CAO CAM HAOA 240.0 239.9
HAM CAM CAL HAL 110.0 60.0
HAM CAM CAL HALA 230.0 180.0
CAO CAM HAM HAMA 240.7 240.0
HAM CAM CAO OAW 198.5 60.0
HAM CAM CAO HAO 318.5 180.0
HAM CAM CAO HAOA 78.5 300.1
HAMA CAM CAL HAL 230.0 180.0
HAMA CAM CAL HALA 350.0 300.0
CAO CAM HAMA HAM 119.3 120.0
HAMA CAM CAO OAW 78.5 300.0
HAMA CAM CAO HAO 198.5 60.0
HAMA CAM CAO HAOA 318.5 180.1
OAF CAX CAP CAN 97.3 0.0
CAP CAN CAL HAL 306.8 60.0
CAP CAN CAL HALA 186.8 300.0
HAN CAN CAP HANA 120.0 120.1
HAN CAN CAL HAL 66.8 180.0
HAN CAN CAL HALA 306.8 60.0
CAP CAN HAN HANA 240.7 240.0
HANA CAN CAL HAL 186.8 300.0
HANA CAN CAL HALA 66.8 180.0
CAP CAN HANA HAN 119.4 120.1
CAG CAZ OAW CAO 342.7 360.0
OAW CAO CAM HAM 198.5 60.0
OAW CAO CAM HAMA 78.5 300.0
CAM CAO OAW HAO 120.0 120.0
CAM CAO OAW HAOA 240.0 240.0
HAO CAO OAW HAOA 120.0 120.0
HAO CAO CAM HAM 318.5 180.0
HAO CAO CAM HAMA 198.5 60.0
CAM CAO HAO OAW 243.3 240.0
CAM CAO HAO HAOA 121.7 120.1
OAW CAO HAO HAOA 238.3 240.1
HAOA CAO CAM HAM 78.5 300.1
HAOA CAO CAM HAMA 318.5 180.1
CAM CAO HAOA OAW 116.7 120.0
CAM CAO HAOA HAO 238.3 239.9
OAW CAO HAOA HAO 121.7 119.9
OAF CAX CAP OAV 177.5 179.9
CAX CAP CAN HAN 354.0 60.0
CAX CAP CAN HANA 233.9 300.0
HAP CAP CAX HAPA 120.0 120.0
HAP CAP CAN HAN 114.0 180.0
HAP CAP CAN HANA 353.9 59.9
CAX CAP HAP HAPA 240.5 240.0
HAP CAP CAX OAV 159.9 60.1
HAPA CAP CAN HAN 233.9 300.1
HAPA CAP CAN HANA 113.9 180.0
CAX CAP HAPA HAP 119.5 120.0
HAPA CAP CAX OAV 39.9 300.0
CAH CBE CBD CAQ 180.0 180.2
CAQ CBD CAJ HAJ 0.1 0.1
CBC CAQ CBD HAQ 240.0 119.9
CBC CAQ CBD HAQA 120.0 240.0
HAQ CAQ CBD HAQA 240.0 120.1
CAQ CBC CAI HAI 358.6 0.1
CAI CBC CAQ CBB 179.7 180.0
CBD CAQ CBC HAQ 120.0 240.0
CBD CAQ CBC HAQA 240.0 120.0
HAQ CAQ CBC HAQA 120.0 240.0
CBD CAQ HAQ HAQA 117.7 239.9
CBC CAQ HAQ HAQA 242.3 120.0
CBD CAQ HAQA HAQ 242.3 120.0
CBC CAQ HAQA HAQ 117.7 240.0
CBE OAU CAB HAB 180.0 300.1
CBE OAU CAB HABA 300.0 60.0
CBE OAU CAB HABB 60.0 180.0
OAU CBE CAH HAH 359.9 0.0
CAH CBE OAU CBD 179.5 180.0
OAF CAX OAV CAP 182.5 180.1
CAX OAV CAK HAK 296.7 59.9
CAX OAV CAK HAKA 176.7 300.0
OAV CAX CAP HAP 159.9 60.1
OAV CAX CAP HAPA 39.9 300.0
OAW CAZ CAG HAG 0.5 0.0
CAG CAZ OAW CAJ 179.4 180.0
OAW CAZ CAJ HAJ 359.7 360.0
CAZ OAW CAO HAO 112.8 60.0
CAZ OAW CAO HAOA 352.8 300.0
CBC CBB CAC HAC 270.1 262.8
CBC CBB CAC HACA 30.1 22.9
CBC CBB CAC HACB 150.1 142.8
CBB CBC CAI HAI 178.3 180.0
CAI CBC CBB CAQ 180.3 180.0
CBB CBC CAQ HAQ 65.8 205.0
CBB CBC CAQ HAQA 305.8 325.0
CBD CBE CAH HAH 179.5 180.0
CAH CBE CBD OAU 180.5 180.0
CBE CBD CAJ HAJ 179.4 180.0
CBE CBD CAQ HAQ 205.3 325.1
CBE CBD CAQ HAQA 325.3 205.0