PDB Chemical Component D2F

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D2F

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.361	1.326
N1	C6	1.345	1.330
C2	N3	1.355	1.323
C2	NAC	1.335	1.385
N3	C4	1.340	1.331
C4	C5	1.395	1.403
C4	OAQ	1.341	1.344
C5	C6	1.423	1.399
C5	CAT	1.400	1.473
C6	NAD	1.348	1.383
CAA	CAK	1.505	1.530
CAB	OAP	1.456	1.429
CAE	CAR	1.402	1.344
CAE	CAT	1.445	1.472
CAF	CAG	1.390	1.383
CAF	CAH	1.389	1.384
CAG	CAI	1.394	1.380
CAH	CAV	1.395	1.384
CAI	CAW	1.390	1.398
CAJ	OAQ	1.417	1.344
CAJ	CAT	1.333	1.359
CAK	CAL	1.535	1.530
CAL	CAM	1.532	1.530
CAM	CAR	1.551	1.507
OAP	CAV	1.358	1.359
CAR	CAW	1.425	1.473
CAV	CAW	1.413	1.402
CAA	HAA	1.100	1.089
CAA	HAAA	1.100	1.091
CAA	HAAB	1.100	1.090
CAB	HAB	1.100	1.089
CAB	HABA	1.100	1.090
CAB	HABB	1.100	1.090
NAC	HNAC	1.000	0.970
NAC	HNAA	1.000	0.970
NAD	HNAD	1.000	0.970
NAD	HNAB	1.000	0.969
CAE	HAE	1.080	1.080
CAF	HAF	1.080	1.080
CAG	HAG	1.080	1.080
CAH	HAH	1.080	1.080
CAI	HAI	1.080	1.080
CAJ	HAJ	1.080	1.080
CAK	HAK	1.100	1.090
CAK	HAKA	1.100	1.090
CAL	HAL	1.101	1.089
CAL	HALA	1.100	1.090
CAM	HAM	1.100	1.091
CAM	HAMA	1.100	1.090

Bond Angles for D2F

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	119.5	120.8
N1	C2	N3	121.4	122.5
N1	C2	NAC	118.0	118.8
N1	C6	C5	120.3	118.5
N1	C6	NAD	117.7	120.8
N3	C2	NAC	120.5	118.7
C2	N3	C4	120.9	120.7
C2	NAC	HNAC	109.5	120.0
C2	NAC	HNAA	109.4	120.0
N3	C4	C5	119.9	118.5
N3	C4	OAQ	132.3	134.0
C5	C4	OAQ	107.7	107.6
C4	C5	C6	117.9	119.1
C4	C5	CAT	106.9	105.7
C4	OAQ	CAJ	109.0	111.3
C6	C5	CAT	135.2	135.3
C5	C6	NAD	122.1	120.8
C5	CAT	CAE	126.5	127.1
C5	CAT	CAJ	109.2	105.7
C6	NAD	HNAD	109.5	120.0
C6	NAD	HNAB	109.5	120.1
CAA	CAK	CAL	111.8	109.4
CAK	CAA	HAA	109.5	109.5
CAK	CAA	HAAA	109.5	109.4
CAK	CAA	HAAB	109.5	109.5
CAA	CAK	HAK	108.7	109.5
CAA	CAK	HAKA	108.7	109.5
CAB	OAP	CAV	115.7	117.0
OAP	CAB	HAB	109.5	109.5
OAP	CAB	HABA	109.5	109.4
OAP	CAB	HABB	109.4	109.5
CAR	CAE	CAT	124.6	120.0
CAE	CAR	CAM	118.9	120.0
CAE	CAR	CAW	119.9	120.0
CAR	CAE	HAE	117.7	120.0
CAE	CAT	CAJ	124.2	127.2
CAT	CAE	HAE	117.7	120.0
CAG	CAF	CAH	119.4	120.4
CAF	CAG	CAI	121.2	120.3
CAG	CAF	HAF	120.3	119.8
CAF	CAG	HAG	119.4	119.8
CAF	CAH	CAV	119.6	120.1
CAH	CAF	HAF	120.3	119.8
CAF	CAH	HAH	120.2	119.9
CAG	CAI	CAW	120.3	119.9
CAI	CAG	HAG	119.4	119.9
CAG	CAI	HAI	119.8	120.1
CAH	CAV	OAP	119.6	120.1
CAH	CAV	CAW	121.4	119.7
CAV	CAH	HAH	120.2	120.0
CAI	CAW	CAR	122.2	120.2
CAI	CAW	CAV	118.1	119.6
CAW	CAI	HAI	119.9	120.0
OAQ	CAJ	CAT	107.1	109.7
OAQ	CAJ	HAJ	126.4	125.2
CAT	CAJ	HAJ	126.5	125.1
CAK	CAL	CAM	108.9	109.5
CAL	CAK	HAK	108.7	109.5
CAL	CAK	HAKA	108.7	109.5
CAK	CAL	HAL	109.6	109.5
CAK	CAL	HALA	109.6	109.5
CAL	CAM	CAR	111.3	109.5
CAM	CAL	HAL	109.6	109.5
CAM	CAL	HALA	109.7	109.4
CAL	CAM	HAM	108.9	109.5
CAL	CAM	HAMA	108.9	109.5
CAM	CAR	CAW	120.8	120.0
CAR	CAM	HAM	108.9	109.4
CAR	CAM	HAMA	108.9	109.5
OAP	CAV	CAW	119.0	120.1
CAR	CAW	CAV	119.7	120.2
HAA	CAA	HAAA	109.5	109.4
HAA	CAA	HAAB	109.4	109.5
HAAA	CAA	HAAB	109.5	109.5
HAB	CAB	HABA	109.4	109.5
HAB	CAB	HABB	109.5	109.5
HABA	CAB	HABB	109.5	109.4
HNAC	NAC	HNAA	109.5	120.0
HNAD	NAD	HNAB	109.5	120.0
HAK	CAK	HAKA	110.2	109.5
HAL	CAL	HALA	109.3	109.5
HAM	CAM	HAMA	110.0	109.5

Torsion Angles for D2F

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	0.1	359.9
C2	N1	C6	NAD	181.1	180.0
N3	C2	N1	NAC	178.2	180.0
N1	C2	N3	C4	3.2	0.0
N1	C2	NAC	HNAC	0.0	0.0
N1	C2	NAC	HNAA	120.0	180.0
C6	N1	C2	N3	357.9	0.0
C6	N1	C2	NAC	179.7	180.0
C4	C5	C6	N1	0.8	0.0
N1	C6	C5	CAT	180.2	180.1
C5	C6	N1	NAD	178.9	179.9
N1	C6	NAD	HNAD	360.0	359.9
N1	C6	NAD	HNAB	120.0	180.0
N3	C2	N1	C6	357.9	0.0
N1	C2	N3	NAC	181.8	180.0
N3	C2	NAC	HNAC	181.8	180.0
N3	C2	NAC	HNAA	301.8	360.0
C2	N3	C4	C5	357.7	359.9
C2	N3	C4	OAQ	177.7	180.0
NAC	C2	N1	C6	179.7	180.0
N1	C2	NAC	N3	178.2	180.0
NAC	C2	N3	C4	181.4	180.0
HNAC	NAC	C2	HNAA	240.0	180.1
C4	N3	C2	NAC	181.4	180.0
C5	C4	N3	OAQ	180.1	180.0
N3	C4	C5	C6	0.3	0.0
N3	C4	C5	CAT	180.7	180.0
N3	C4	OAQ	CAJ	179.2	180.0
N1	C6	C5	C4	0.8	0.0
N3	C4	C5	OAQ	179.9	180.0
C5	C4	OAQ	CAJ	359.2	0.0
C6	C5	C4	CAT	179.6	180.0
C4	C5	C6	NAD	179.7	180.0
C4	C5	CAT	CAE	179.2	179.9
C4	C5	CAT	CAJ	359.6	0.0
N3	C4	OAQ	C5	180.1	180.0
OAQ	C4	C5	C6	180.4	180.0
OAQ	C4	C5	CAT	0.8	360.0
C4	OAQ	CAJ	CAT	0.6	360.0
C4	OAQ	CAJ	HAJ	180.6	180.1
N1	C6	C5	NAD	181.1	180.1
C6	C5	C4	OAQ	180.4	180.0
C4	C5	C6	CAT	180.6	180.0
C6	C5	CAT	CAE	359.7	359.9
C6	C5	CAT	CAJ	180.1	180.0
C5	C6	NAD	HNAD	181.1	180.0
C5	C6	NAD	HNAB	301.1	0.1
CAT	C5	C4	OAQ	0.8	360.0
C4	C5	CAT	C6	179.5	180.0
CAT	C5	C6	NAD	359.1	0.0
CAR	CAE	CAT	C5	91.4	160.2
CAE	CAT	C5	CAJ	179.6	179.9
C5	CAT	CAE	HAE	271.4	340.2
OAQ	CAJ	CAT	C5	359.9	360.0
C5	CAT	CAJ	HAJ	179.9	179.9
N1	C6	NAD	C5	178.9	179.9
NAD	C6	C5	CAT	359.1	0.0
HNAD	NAD	C6	HNAB	240.0	179.9
CAA	CAK	CAL	CAM	193.9	180.0
CAL	CAK	CAA	HAK	240.0	240.0
CAL	CAK	CAA	HAKA	120.0	120.0
CAA	CAK	CAL	HAL	313.9	300.0
CAA	CAK	CAL	HALA	73.9	60.0
HAA	CAA	CAK	HAAA	240.0	240.0
HAA	CAA	CAK	HAAB	120.0	120.1
HAAA	CAA	CAK	HAAB	240.0	240.0
HAK	CAK	CAA	HAKA	240.0	240.0
CAH	CAV	OAP	CAB	355.1	0.1
CAB	OAP	CAV	CAW	174.5	180.0
HAB	CAB	OAP	HABA	240.1	240.0
HAB	CAB	OAP	HABB	120.0	120.1
HABA	CAB	OAP	HABB	240.0	240.0
C5	CAT	CAE	CAR	91.4	160.2
CAR	CAE	CAT	CAJ	270.9	340.1
CAT	CAE	CAR	HAE	180.0	180.1
CAI	CAW	CAR	CAE	274.6	105.0
CAL	CAM	CAR	CAE	117.2	99.0
CAM	CAR	CAE	CAW	172.9	180.1
CAE	CAR	CAM	HAM	357.2	339.0
CAE	CAR	CAM	HAMA	237.2	219.0
CAE	CAR	CAW	CAV	96.3	285.1
C5	CAT	CAE	CAJ	180.5	180.1
CAT	CAE	CAR	CAM	357.4	353.1
CAT	CAE	CAR	CAW	184.5	173.0
CAR	CAE	CAT	HAE	180.0	179.9
OAQ	CAJ	CAT	CAE	180.3	180.1
CAE	CAT	CAJ	HAJ	0.3	360.0
CAG	CAF	CAH	CAV	359.3	0.0
CAH	CAF	CAG	HAF	180.0	180.2
CAG	CAF	CAH	HAH	179.3	180.0
CAF	CAG	CAI	CAW	359.8	360.0
CAI	CAG	CAF	HAG	180.0	180.0
CAF	CAG	CAI	HAI	179.8	180.0
CAH	CAF	CAG	CAI	0.8	360.0
CAG	CAF	CAH	HAF	180.0	179.8
CAH	CAF	CAG	HAG	180.8	180.0
CAF	CAH	CAV	OAP	179.4	180.0
CAF	CAH	CAV	CAW	0.1	360.0
CAV	CAH	CAF	HAH	180.0	180.1
CAI	CAG	CAF	CAH	0.8	360.0
CAI	CAG	CAF	HAF	180.8	179.8
CAF	CAG	CAI	HAG	180.0	180.0
CAG	CAI	CAW	CAR	181.3	180.1
CAG	CAI	CAW	CAV	359.6	0.0
CAW	CAI	CAG	HAI	180.0	180.0
CAB	OAP	CAV	CAH	355.1	0.1
CAV	CAH	CAF	HAF	179.3	180.3
CAF	CAH	CAV	HAH	180.0	179.9
CAI	CAW	CAV	CAH	0.5	0.0
OAP	CAV	CAH	CAW	179.4	180.0
CAR	CAW	CAV	CAH	178.8	180.0
CAE	CAR	CAW	CAI	274.6	105.0
CAW	CAI	CAG	HAG	179.8	180.0
CAG	CAI	CAW	HAI	180.0	180.0
CAH	CAV	CAW	CAI	0.5	0.0
CAM	CAR	CAW	CAI	101.8	284.9
OAP	CAV	CAW	CAI	181.2	180.0
CAR	CAW	CAI	CAV	181.7	180.0
C5	CAT	CAJ	OAQ	359.9	360.0
CAE	CAT	CAJ	OAQ	180.3	180.1
CAT	CAJ	OAQ	HAJ	180.0	179.9
C5	CAT	CAJ	CAE	179.6	179.9
CAJ	CAT	CAE	HAE	90.9	160.2
OAQ	CAJ	CAT	HAJ	180.0	180.1
CAL	CAK	CAA	HAA	180.0	60.0
CAL	CAK	CAA	HAAA	300.0	180.0
CAL	CAK	CAA	HAAB	60.0	299.9
CAA	CAK	CAL	HAK	120.0	120.0
CAA	CAK	CAL	HAKA	240.0	240.0
CAK	CAL	CAM	CAR	301.6	184.2
CAM	CAL	CAK	HAL	240.0	240.0
CAM	CAL	CAK	HALA	120.0	120.0
CAK	CAL	CAM	HAM	61.6	304.2
CAK	CAL	CAM	HAMA	181.6	64.2
HAK	CAK	CAL	HAKA	120.0	120.0
HAL	CAL	CAK	HALA	240.0	240.0
CAE	CAR	CAM	CAL	117.2	99.0
CAM	CAL	CAK	HAK	73.9	60.0
CAM	CAL	CAK	HAKA	313.9	300.0
CAK	CAL	CAM	HAL	120.0	120.0
CAK	CAL	CAM	HALA	240.0	240.0
CAL	CAM	CAR	CAW	290.1	279.0
CAR	CAM	CAL	HAM	240.0	240.1
CAR	CAM	CAL	HAMA	120.0	120.0
HAL	CAL	CAM	HALA	120.0	120.0
HAM	CAM	CAL	HAMA	240.0	240.0
CAM	CAR	CAE	CAT	357.4	353.1
CAE	CAR	CAM	CAW	187.1	179.9
CAM	CAR	CAE	HAE	177.4	173.0
CAI	CAW	CAR	CAM	101.8	284.9
CAR	CAM	CAL	HAL	181.6	64.2
CAR	CAM	CAL	HALA	61.6	304.2
CAL	CAM	CAR	HAM	120.0	120.0
CAL	CAM	CAR	HAMA	240.0	239.9
CAM	CAR	CAW	CAV	283.5	105.0
HAM	CAM	CAR	HAMA	120.0	119.9
CAV	OAP	CAB	HAB	180.0	180.0
CAV	OAP	CAB	HABA	300.0	300.0
CAV	OAP	CAB	HABB	60.0	59.9
CAH	CAV	OAP	CAW	180.6	180.0
OAP	CAV	CAH	HAH	359.4	0.0
CAI	CAW	CAV	OAP	181.2	180.0
CAR	CAW	CAV	OAP	359.5	360.0
CAW	CAR	CAE	CAT	184.5	173.0
CAE	CAR	CAW	CAM	172.8	180.1
CAW	CAR	CAE	HAE	4.5	352.9
CAH	CAV	CAW	CAR	178.8	180.0
CAI	CAW	CAR	CAV	178.3	179.9
CAR	CAW	CAI	HAI	1.3	0.1
CAW	CAR	CAM	HAM	170.0	159.1
CAW	CAR	CAM	HAMA	50.1	39.1
OAP	CAV	CAW	CAR	359.5	360.0
CAH	CAV	CAW	OAP	179.4	180.0
CAW	CAV	CAH	HAH	180.1	180.0
CAI	CAW	CAV	CAR	181.7	180.0
CAV	CAW	CAI	HAI	179.6	180.0
HAA	CAA	CAK	CAL	180.0	60.0
CAK	CAA	HAA	HAAA	120.0	119.9
CAK	CAA	HAA	HAAB	240.0	239.9
HAA	CAA	CAK	HAK	300.0	180.0
HAA	CAA	CAK	HAKA	60.0	300.0
HAAA	CAA	HAA	HAAB	120.0	120.0
HAAA	CAA	CAK	CAL	300.0	180.0
CAK	CAA	HAAA	HAA	240.0	240.0
CAK	CAA	HAAA	HAAB	120.0	120.0
HAAA	CAA	CAK	HAK	60.0	300.0
HAAA	CAA	CAK	HAKA	180.0	60.0
HAA	CAA	HAAA	HAAB	240.0	240.0
HAAB	CAA	CAK	CAL	60.0	299.9
CAK	CAA	HAAB	HAA	120.0	120.1
CAK	CAA	HAAB	HAAA	240.0	240.1
HAAB	CAA	CAK	HAK	180.0	59.9
HAAB	CAA	CAK	HAKA	300.0	180.0
HAA	CAA	HAAB	HAAA	120.0	120.0
HAB	CAB	OAP	CAV	180.0	180.0
OAP	CAB	HAB	HABA	120.0	120.0
OAP	CAB	HAB	HABB	240.0	239.9
HABA	CAB	HAB	HABB	120.0	120.0
HABA	CAB	OAP	CAV	300.0	300.0
OAP	CAB	HABA	HAB	240.0	240.0
OAP	CAB	HABA	HABB	120.0	120.0
HAB	CAB	HABA	HABB	240.0	240.0
HABB	CAB	OAP	CAV	60.0	59.9
OAP	CAB	HABB	HAB	120.0	120.1
OAP	CAB	HABB	HABA	240.0	240.0
HAB	CAB	HABB	HABA	120.0	120.0
C2	NAC	HNAC	HNAA	120.0	179.9
C2	NAC	HNAA	HNAC	240.0	180.1
C6	NAD	HNAD	HNAB	120.0	180.1
C6	NAD	HNAB	HNAD	239.9	179.9
CAR	CAE	HAE	CAT	180.0	180.1
HAE	CAE	CAR	CAM	177.4	173.0
HAE	CAE	CAR	CAW	4.5	352.9
HAE	CAE	CAT	CAJ	90.9	160.2
CAG	CAF	HAF	CAH	180.0	180.2
HAF	CAF	CAG	CAI	180.8	179.8
HAF	CAF	CAG	HAG	0.8	359.7
HAF	CAF	CAH	CAV	179.3	180.3
HAF	CAF	CAH	HAH	359.3	0.2
HAG	CAG	CAF	CAH	180.8	180.0
CAF	CAG	HAG	CAI	180.0	180.0
HAG	CAG	CAF	HAF	0.8	359.7
HAG	CAG	CAI	CAW	179.8	180.0
HAG	CAG	CAI	HAI	359.8	0.0
CAF	CAH	HAH	CAV	180.0	180.1
HAH	CAH	CAF	HAF	359.3	0.2
HAH	CAH	CAV	OAP	359.4	0.0
HAH	CAH	CAV	CAW	180.1	180.0
CAG	CAI	HAI	CAW	180.0	180.0
HAI	CAI	CAG	HAG	359.8	0.0
HAI	CAI	CAW	CAR	1.3	0.1
HAI	CAI	CAW	CAV	179.6	180.0
OAQ	CAJ	HAJ	CAT	180.0	179.9
CAA	CAK	HAK	CAL	238.1	240.0
HAK	CAK	CAA	HAA	300.0	180.0
HAK	CAK	CAA	HAAA	60.0	300.0
HAK	CAK	CAA	HAAB	180.0	59.9
CAA	CAK	HAK	HAKA	119.0	120.0
HAK	CAK	CAL	CAM	73.9	60.0
CAL	CAK	HAK	HAKA	240.9	240.0
HAK	CAK	CAL	HAL	193.9	180.0
HAK	CAK	CAL	HALA	313.9	300.0
CAA	CAK	HAKA	CAL	121.9	120.0
HAKA	CAK	CAA	HAA	60.0	300.0
HAKA	CAK	CAA	HAAA	180.0	60.0
HAKA	CAK	CAA	HAAB	300.0	180.0
CAA	CAK	HAKA	HAK	240.9	240.0
HAKA	CAK	CAL	CAM	313.9	300.0
CAL	CAK	HAKA	HAK	119.1	120.0
HAKA	CAK	CAL	HAL	73.9	60.0
HAKA	CAK	CAL	HALA	193.9	180.0
CAK	CAL	HAL	CAM	240.5	240.0
HAL	CAL	CAK	HAK	193.9	180.0
HAL	CAL	CAK	HAKA	73.9	60.0
CAK	CAL	HAL	HALA	120.2	120.0
HAL	CAL	CAM	CAR	181.6	64.2
CAM	CAL	HAL	HALA	239.7	240.0
HAL	CAL	CAM	HAM	301.6	184.2
HAL	CAL	CAM	HAMA	61.6	304.2
CAK	CAL	HALA	CAM	119.5	120.0
HALA	CAL	CAK	HAK	313.9	300.0
HALA	CAL	CAK	HAKA	193.9	180.0
CAK	CAL	HALA	HAL	239.8	240.0
HALA	CAL	CAM	CAR	61.6	304.2
CAM	CAL	HALA	HAL	120.2	120.0
HALA	CAL	CAM	HAM	181.6	64.2
HALA	CAL	CAM	HAMA	301.6	184.2
CAL	CAM	HAM	CAR	238.5	240.0
HAM	CAM	CAL	HAL	301.6	184.2
HAM	CAM	CAL	HALA	181.6	64.2
CAL	CAM	HAM	HAMA	119.3	120.1
HAM	CAM	CAR	CAW	170.0	159.1
CAR	CAM	HAM	HAMA	240.7	240.0
CAL	CAM	HAMA	CAR	121.5	120.1
HAMA	CAM	CAL	HAL	61.6	304.2
HAMA	CAM	CAL	HALA	301.6	184.2
CAL	CAM	HAMA	HAM	240.7	240.0
HAMA	CAM	CAR	CAW	50.1	39.1
CAR	CAM	HAMA	HAM	119.2	119.9