PDB Chemical Component D2A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D2A

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.386	1.377
C1	C6	1.413	1.395
C1	H1	1.103	1.081
C2	C3	1.412	1.395
C2	H2	1.104	1.080
C3	C4	1.414	1.395
C3	C7	1.410	1.482
C4	C5	1.387	1.377
C4	H4	1.103	1.080
C5	C6	1.414	1.396
C5	H5	1.103	1.080
C6	C25	1.409	1.480
C7	C8	1.412	1.395
C7	C12	1.414	1.395
C8	C9	1.390	1.376
C8	H8	1.104	1.081
C9	C10	1.407	1.397
C9	H9	1.103	1.080
C10	C11	1.410	1.397
C10	C13	1.444	1.478
C11	C12	1.386	1.377
C11	H11	1.103	1.080
C12	H12	1.102	1.080
C13	N14	1.412	1.312
C13	N17	1.416	1.369
N14	C15	1.380	1.348
C15	C16	1.417	1.408
C15	C19	1.402	1.400
C16	N17	1.380	1.382
C16	C18	1.410	1.384
N17	H17	1.020	0.969
C18	C21	1.424	1.393
C18	H18	1.103	1.080
C19	C20	1.393	1.362
C19	H19	1.104	1.081
C20	C21	1.426	1.400
C20	H20	1.103	1.080
C21	C22	1.408	1.479
C22	N23	1.339	1.378
C22	N24	1.342	1.303
N23	H231	1.020	0.970
N23	H232	1.019	0.970
N24	H24	1.020	0.970
C25	N26	1.342	1.378
C25	N27	1.340	1.303
N26	H261	1.020	0.970
N26	H262	1.021	0.970
N27	H27	1.021	0.970

Bond Angles for D2A

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	121.9	120.0
C2	C1	H1	118.0	120.0
C1	C2	C3	121.7	120.0
C1	C2	H2	118.2	120.0
C6	C1	H1	120.1	120.0
C1	C6	C5	116.4	120.0
C1	C6	C25	121.7	120.0
C3	C2	H2	120.1	120.0
C2	C3	C4	116.5	120.0
C2	C3	C7	122.0	120.0
C4	C3	C7	121.5	120.0
C3	C4	C5	121.8	120.0
C3	C4	H4	120.1	120.0
C3	C7	C8	122.8	120.0
C3	C7	C12	120.7	120.0
C5	C4	H4	118.1	120.0
C4	C5	C6	121.7	120.0
C4	C5	H5	118.2	120.0
C6	C5	H5	120.1	120.0
C5	C6	C25	121.9	120.0
C6	C25	N26	123.3	120.0
C6	C25	N27	123.5	120.0
C8	C7	C12	116.5	120.0
C7	C8	C9	121.8	120.0
C7	C8	H8	119.9	120.0
C7	C12	C11	121.7	120.1
C7	C12	H12	120.2	120.0
C9	C8	H8	118.3	120.0
C8	C9	C10	121.4	120.0
C8	C9	H9	118.7	120.0
C10	C9	H9	120.0	120.0
C9	C10	C11	117.1	120.0
C9	C10	C13	122.6	120.0
C11	C10	C13	120.3	120.0
C10	C11	C12	121.5	120.0
C10	C11	H11	120.1	120.0
C10	C13	N14	122.9	125.2
C10	C13	N17	121.0	125.1
C12	C11	H11	118.4	120.1
C11	C12	H12	118.2	120.0
N14	C13	N17	116.1	109.7
C13	N14	C15	101.2	109.9
C13	N17	C16	101.0	107.0
C13	N17	H17	115.4	126.5
N14	C15	C16	110.7	107.2
N14	C15	C19	128.9	133.2
C16	C15	C19	120.4	119.6
C15	C16	N17	110.9	106.2
C15	C16	C18	120.2	120.0
C15	C19	C20	118.8	120.1
C15	C19	H19	121.0	120.0
N17	C16	C18	128.9	133.8
C16	N17	H17	115.4	126.5
C16	C18	C21	120.5	119.6
C16	C18	H18	119.3	120.2
C21	C18	H18	120.2	120.2
C18	C21	C20	117.1	120.2
C18	C21	C22	121.2	119.9
C20	C19	H19	120.3	119.9
C19	C20	C21	123.1	120.5
C19	C20	H20	117.2	119.7
C21	C20	H20	119.7	119.7
C20	C21	C22	121.7	119.9
C21	C22	N23	123.7	120.0
C21	C22	N24	123.3	120.0
N23	C22	N24	113.1	120.0
C22	N23	H231	123.6	120.0
C22	N23	H232	107.2	120.0
C22	N24	H24	92.6	120.0
H231	N23	H232	107.2	120.0
N26	C25	N27	113.2	120.0
C25	N26	H261	123.3	120.0
C25	N26	H262	107.3	120.0
C25	N27	H27	110.3	120.0
H261	N26	H262	107.3	120.0

Torsion Angles for D2A

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	H1	179.9	180.6
C2	C1	C6	C5	0.1	359.4
C2	C1	C6	C25	180.0	179.7
C3	C2	C1	H2	180.0	180.3
C1	C2	C3	C4	0.6	359.7
C1	C2	C3	C7	179.8	179.7
C2	C1	C6	H1	180.1	179.4
C6	C1	C2	C3	359.6	0.6
C6	C1	C2	H2	179.6	180.3
C4	C5	C6	C1	360.0	0.2
C1	C6	C5	H5	180.0	180.3
C5	C6	C1	C25	180.1	179.7
C1	C6	C25	N26	327.8	359.7
C1	C6	C25	N27	148.0	179.8
C2	C1	H1	C6	179.9	180.6
H1	C1	C2	C3	179.7	180.0
H1	C1	C2	H2	359.6	359.8
H1	C1	C6	C5	180.0	180.0
H1	C1	C6	C25	359.9	0.3
C3	C2	C1	C6	359.6	0.6
C3	C2	C1	H1	179.7	180.0
C1	C2	C3	H2	180.0	179.7
C4	C3	C2	C7	180.8	180.0
C2	C3	C4	C5	359.4	360.0
C2	C3	C4	H4	179.4	180.1
C2	C3	C7	C8	28.4	320.2
C2	C3	C7	C12	208.7	140.0
H2	C2	C1	C6	179.6	180.3
H2	C2	C1	H1	359.6	359.8
C1	C2	H2	C3	180.0	180.3
H2	C2	C3	C4	180.6	180.0
H2	C2	C3	C7	359.8	0.0
C4	C3	C2	H2	180.6	180.0
C2	C3	C4	C7	179.2	180.0
C4	C3	C7	C8	207.5	140.2
C4	C3	C7	C12	27.8	320.0
C5	C4	C3	H4	180.0	179.9
C3	C4	C5	C6	0.3	0.1
C3	C4	C5	H5	180.2	180.0
C7	C3	C2	H2	359.8	0.0
C2	C3	C7	C4	180.9	180.0
C7	C3	C4	C5	180.3	179.9
C7	C3	C4	H4	0.2	0.0
C8	C7	C3	C12	179.7	180.2
C3	C7	C8	C9	180.2	180.0
C3	C7	C8	H8	0.1	0.1
C3	C7	C12	C11	179.8	179.7
C3	C7	C12	H12	359.9	0.2
C1	C6	C5	C4	360.0	0.2
C5	C4	C3	C7	180.3	179.9
C3	C4	C5	H4	180.0	180.1
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C25	180.1	180.0
H4	C4	C3	C7	0.2	0.0
C3	C4	H4	C5	180.0	179.9
H4	C4	C5	C6	180.3	180.0
H4	C4	C5	H5	0.3	359.9
C5	C6	C1	H1	180.0	180.0
C1	C6	C5	C25	179.9	180.3
C6	C5	C4	H4	180.3	180.0
C4	C5	C6	H5	180.0	180.0
C5	C6	C25	N26	147.7	180.0
C5	C6	C25	N27	327.9	0.0
H5	C5	C4	H4	0.3	359.9
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C25	0.1	0.0
C25	C6	C1	H1	359.9	0.3
C1	C6	C25	C5	180.1	179.7
C25	C6	C5	H5	0.1	0.0
N26	C25	C6	N27	179.8	179.9
C6	C25	N26	H261	180.0	0.0
C6	C25	N26	H262	54.8	179.8
C6	C25	N27	H27	262.2	179.9
C3	C7	C8	C12	180.3	179.8
C8	C7	C12	C11	0.2	359.5
C8	C7	C12	H12	180.2	180.0
C9	C8	C7	H8	180.1	179.9
C7	C8	C9	C10	0.0	0.0
C7	C8	C9	H9	180.0	180.0
C3	C7	C12	C8	179.7	180.2
C12	C7	C8	C9	359.8	0.2
C12	C7	C8	H8	179.8	180.3
C10	C11	C12	C7	360.0	0.5
C7	C12	C11	H11	180.0	180.2
C11	C12	C7	H12	179.9	179.5
C9	C8	C7	C12	359.8	0.2
C7	C8	C9	H8	179.9	180.1
C10	C9	C8	H9	180.1	180.0
C8	C9	C10	C11	0.1	0.0
C8	C9	C10	C13	180.0	179.9
H8	C8	C7	C12	179.8	180.3
C7	C8	H8	C9	180.1	179.9
H8	C8	C9	C10	180.1	179.9
H8	C8	C9	H9	0.1	359.9
C10	C9	C8	H8	180.1	179.9
C8	C9	C10	H9	179.9	180.0
C11	C10	C9	C13	180.1	180.1
C9	C10	C11	C12	359.9	359.7
C9	C10	C11	H11	179.9	180.0
C9	C10	C13	N14	1.0	320.0
C9	C10	C13	N17	181.2	140.3
H9	C9	C8	H8	0.1	359.9
C8	C9	H9	C10	180.1	180.0
H9	C9	C10	C11	180.1	180.1
H9	C9	C10	C13	0.0	360.0
C7	C12	C11	C10	360.0	0.5
C11	C10	C9	H9	180.1	180.1
C9	C10	C11	C13	179.9	179.9
C11	C10	C13	N14	180.9	139.9
C11	C10	C13	N17	1.0	320.2
C12	C11	C10	H11	180.0	179.7
C10	C11	C12	H12	179.9	180.1
C13	C10	C9	H9	0.0	360.0
C9	C10	C13	C11	180.1	180.1
C13	C10	C11	C12	180.0	179.8
C13	C10	C11	H11	0.0	0.1
N14	C13	C10	N17	179.8	179.7
C10	C13	N14	C15	180.0	179.9
C10	C13	N17	C16	179.9	180.0
C10	C13	N17	H17	54.7	0.0
C7	C12	C11	H12	180.1	180.5
C12	C11	C10	C13	180.0	179.8
C10	C11	C12	H11	180.0	180.3
H11	C11	C10	C13	0.0	0.1
C10	C11	H11	C12	180.0	179.7
H11	C11	C12	H12	359.9	359.8
C7	C12	H12	C11	179.9	179.5
H12	C12	C11	H11	359.9	359.8
C10	C13	N14	N17	180.2	180.3
N14	C13	N17	C16	0.1	0.2
N14	C13	N17	H17	234.8	180.3
C13	N14	C15	C16	0.1	0.4
C13	N14	C15	C19	180.0	180.0
C10	C13	N17	N14	179.8	179.7
N17	C13	N14	C15	359.9	359.6
C15	C16	N17	C13	360.0	0.0
C13	N17	C16	C18	179.9	180.1
C16	N17	C13	H17	125.3	179.9
C15	N14	C13	N17	359.9	359.6
C16	C15	N14	C19	180.1	180.4
N14	C15	C16	N17	360.0	359.7
N14	C15	C16	C18	180.0	179.7
N14	C15	C19	C20	180.0	180.4
N14	C15	C19	H19	360.0	0.4
C13	N17	C16	C15	360.0	0.0
N14	C15	C16	C19	179.9	179.7
C16	C15	C19	C20	359.9	359.9
C16	C15	C19	H19	179.9	180.0
N17	C16	C15	C18	179.9	180.0
C15	C16	N17	H17	125.2	180.0
C15	C16	C18	C21	359.9	360.0
C15	C16	C18	H18	179.9	179.9
N14	C15	C19	C16	180.1	180.4
C19	C15	C16	N17	180.0	180.0
C19	C15	C16	C18	0.1	0.0
C20	C19	C15	H19	180.0	180.0
C15	C19	C20	C21	0.0	0.1
C15	C19	C20	H20	180.0	180.0
C13	N17	C16	H17	234.7	180.1
N17	C16	C15	C19	180.0	180.0
C15	C16	N17	C18	180.1	180.0
N17	C16	C18	C21	180.0	179.9
N17	C16	C18	H18	0.0	359.9
C18	C16	C15	C19	0.1	0.0
C15	C16	C18	N17	179.9	180.0
C18	C16	N17	H17	305.1	360.0
C21	C18	C16	H18	179.9	180.0
C16	C18	C21	C20	0.1	0.0
C16	C18	C21	C22	180.0	180.0
C13	N17	H17	C16	117.4	179.9
H17	N17	C16	C18	305.1	360.0
C16	C18	C21	H18	180.1	180.0
C19	C20	C21	C18	359.9	359.9
C18	C21	C20	H20	180.0	180.0
C20	C21	C18	C22	180.1	180.1
C18	C21	C22	N23	225.4	180.0
C18	C21	C22	N24	45.1	360.0
C16	C18	H18	C21	179.9	180.0
H18	C18	C21	C20	180.0	180.1
H18	C18	C21	C22	360.0	360.0
C15	C19	C20	H19	180.0	180.0
C18	C21	C20	C19	359.9	359.9
C21	C20	C19	H20	180.0	180.1
C19	C20	C21	C22	180.0	180.0
C15	C19	H19	C20	180.0	180.0
H19	C19	C20	C21	180.1	180.0
H19	C19	C20	H20	0.0	360.0
C20	C21	C18	H18	180.0	180.1
C18	C21	C20	C22	179.9	179.9
C21	C20	C19	H19	180.1	180.0
C19	C20	C21	H20	180.0	179.9
C20	C21	C22	N23	45.3	360.0
C20	C21	C22	N24	225.0	179.9
H20	C20	C19	H19	0.0	360.0
C19	C20	H20	C21	180.0	180.1
H20	C20	C21	C22	0.0	0.1
C22	C21	C18	H18	360.0	360.0
C18	C21	C22	C20	180.1	180.1
C22	C21	C20	H20	0.0	0.1
N23	C22	C21	N24	180.3	180.0
C21	C22	N23	H231	180.0	360.0
C21	C22	N23	H232	54.7	180.0
C21	C22	N24	H24	356.4	179.9
C21	C22	N23	N24	179.7	180.0
N23	C22	N24	H24	176.1	359.9
H231	N23	C22	H232	125.3	180.0
C21	C22	N24	N23	180.3	180.0
N24	C22	N23	H231	0.3	180.0
N24	C22	N23	H232	235.0	0.0
H231	N23	C22	N24	0.3	180.0
C22	N23	H231	H232	234.7	180.0
H232	N23	C22	N24	235.0	0.0
C22	N23	H232	H231	134.6	180.0
C6	C25	N26	N27	180.2	180.1
N26	C25	N27	H27	82.4	0.0
H261	N26	C25	H262	125.2	180.2
C6	C25	N27	N26	179.8	179.9
N27	C25	N26	H261	359.8	179.9
N27	C25	N26	H262	234.6	359.7
H261	N26	C25	N27	359.8	179.9
C25	N26	H261	H262	234.8	179.8
H262	N26	C25	N27	234.6	359.7
C25	N26	H262	H261	134.4	180.2