PDB Chemical Component D1D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D1D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
S1	C1	1.750	1.814
S1	S4	1.995	2.051
C1	C2	1.522	1.525
C1	H1C1	1.115	1.090
C1	H1C2	1.115	1.090
C2	O2	1.422	1.430
C2	C3	1.547	1.521
C2	H2	1.115	1.090
O2	HA	0.950	0.967
C3	O3	1.421	1.430
C3	C4	1.526	1.525
C3	H3	1.115	1.089
O3	HB	0.951	0.967
C4	S4	1.736	1.814
C4	H4C1	1.115	1.090
C4	H4C2	1.115	1.091

Bond Angles for D1D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	S1	S4	115.1	99.8
S1	C1	C2	117.7	109.7
S1	C1	H1C1	109.2	109.4
S1	C1	H1C2	109.2	109.4
S1	S4	C4	113.2	99.8
C2	C1	H1C1	109.2	109.4
C2	C1	H1C2	109.3	109.5
C1	C2	O2	102.4	109.2
C1	C2	C3	126.9	110.9
C1	C2	H2	107.3	109.2
H1C1	C1	H1C2	100.8	109.4
O2	C2	C3	104.1	109.2
O2	C2	H2	107.4	109.2
C2	O2	HA	102.4	106.8
C3	C2	H2	107.3	109.2
C2	C3	O3	104.9	109.1
C2	C3	C4	128.9	110.9
C2	C3	H3	105.9	109.2
O3	C3	C4	103.4	109.2
O3	C3	H3	106.0	109.1
C3	O3	HB	104.9	106.8
C4	C3	H3	106.0	109.2
C3	C4	S4	118.2	109.7
C3	C4	H4C1	109.0	109.5
C3	C4	H4C2	109.1	109.4
S4	C4	H4C1	109.0	109.4
S4	C4	H4C2	109.0	109.4
H4C1	C4	H4C2	101.0	109.4

Torsion Angles for D1D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	S1	S4	C4	0.7	305.5
C2	C1	S1	H1C1	125.3	120.0
C2	C1	S1	H1C2	234.7	239.9
S1	C1	C2	O2	244.2	167.8
S1	C1	C2	C3	2.7	288.2
S1	C1	C2	H2	131.4	48.5
H1C1	C1	S1	H1C2	109.5	119.8
S4	S1	C1	C2	358.3	62.2
S4	S1	C1	H1C1	233.1	302.2
S4	S1	C1	H1C2	123.6	182.3
C3	C4	S4	S1	359.4	62.2
S1	S4	C4	H4C1	234.2	182.3
S1	S4	C4	H4C2	124.7	302.1
C2	C1	S1	S4	358.3	62.2
S1	C1	C2	H1C1	234.7	240.0
S1	C1	C2	H1C2	125.3	120.1
H1C1	C1	C2	H1C2	250.5	240.1
O2	C2	C1	C3	241.5	239.7
O2	C2	C1	H2	112.9	119.3
C1	C2	O2	HA	180.0	300.7
C3	C2	C1	H2	231.3	239.6
C1	C2	C3	O3	118.7	195.0
C1	C2	C3	C4	357.2	74.7
C1	C2	C3	H3	230.5	314.2
H1C1	C1	S1	S4	233.1	302.2
S1	C1	H1C1	C2	130.0	120.2
S1	C1	H1C1	H1C2	245.0	240.1
C2	C1	H1C1	H1C2	115.0	119.9
H1C1	C1	C2	O2	9.5	287.8
H1C1	C1	C2	C3	128.0	48.2
H1C1	C1	C2	H2	256.6	168.6
H1C2	C1	S1	S4	123.6	182.3
S1	C1	H1C2	C2	230.0	239.7
S1	C1	H1C2	H1C1	115.0	119.8
C2	C1	H1C2	H1C1	245.0	240.1
H1C2	C1	C2	O2	119.0	47.7
H1C2	C1	C2	C3	237.4	168.1
H1C2	C1	C2	H2	6.1	288.4
O2	C2	C1	H1C1	9.5	287.8
O2	C2	C1	H1C2	119.0	47.7
C1	C2	O2	C3	133.6	121.4
C1	C2	O2	H2	247.1	240.7
C3	C2	O2	H2	113.6	119.4
O2	C2	C3	O3	236.4	315.3
O2	C2	C3	C4	114.9	195.0
O2	C2	C3	H3	348.2	74.6
C3	C2	C1	H1C1	128.0	48.2
C3	C2	C1	H1C2	237.4	168.1
C1	C2	C3	O2	242.3	239.7
C1	C2	C3	H2	128.7	120.3
O2	C2	C3	H2	246.4	240.7
C3	C2	O2	HA	46.4	179.4
O3	C3	C2	C4	121.4	120.3
O3	C3	C2	H3	248.1	240.8
C2	C3	O3	HB	180.0	178.8
C4	C3	C2	H3	126.7	120.4
C2	C3	C4	S4	1.5	288.1
C2	C3	C4	H4C1	126.7	168.1
C2	C3	C4	H4C2	236.2	48.2
H2	C2	C1	H1C1	256.6	168.6
H2	C2	C1	H1C2	6.1	288.4
C1	C2	H2	O2	109.5	119.3
C1	C2	H2	C3	220.8	238.6
O2	C2	H2	C3	111.4	119.4
H2	C2	O2	HA	292.9	60.0
H2	C2	C3	O3	350.0	74.7
H2	C2	C3	C4	228.5	314.3
H2	C2	C3	H3	101.8	193.9
HA	O2	C2	C3	46.4	179.4
HA	O2	C2	H2	292.9	60.0
O3	C3	C2	H2	350.0	74.7
C2	C3	O3	C4	223.1	238.6
C2	C3	O3	H3	111.8	119.3
C4	C3	O3	H3	248.8	240.7
O3	C3	C4	S4	239.4	167.8
O3	C3	C4	H4C1	4.7	47.8
O3	C3	C4	H4C2	114.2	287.9
S1	S4	C4	C3	359.4	62.2
C4	C3	C2	H2	228.5	314.3
C2	C3	C4	O3	122.1	120.3
C2	C3	C4	H3	233.3	239.6
O3	C3	C4	H3	111.2	119.3
C4	C3	O3	HB	317.0	300.1
S4	C4	C3	H4C1	234.8	120.1
S4	C4	C3	H4C2	125.3	240.0
H4C1	C4	C3	H4C2	250.5	119.9
H3	C3	C2	H2	101.8	193.9
C2	C3	H3	O3	248.9	240.8
C2	C3	H3	C4	139.5	121.4
O3	C3	H3	C4	250.6	240.7
H3	C3	O3	HB	68.2	59.4
H3	C3	C4	S4	128.2	48.6
H3	C3	C4	H4C1	253.4	288.5
H3	C3	C4	H4C2	2.9	168.6
HB	O3	C3	C4	317.0	300.1
HB	O3	C3	H3	68.2	59.4
S4	C4	C3	H3	128.2	48.6
C3	C4	S4	H4C1	125.3	239.9
C3	C4	S4	H4C2	234.7	120.1
H4C1	C4	S4	H4C2	109.5	240.2
H4C1	C4	C3	H3	253.4	288.5
C3	C4	H4C1	S4	229.6	120.3
C3	C4	H4C1	H4C2	114.8	240.1
S4	C4	H4C1	H4C2	245.2	119.8
H4C2	C4	C3	H3	2.9	168.6
C3	C4	H4C2	S4	130.5	239.8
C3	C4	H4C2	H4C1	245.2	119.9
S4	C4	H4C2	H4C1	114.8	240.2