PDB Chemical Component D1C
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D1C
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NAI |
SAH |
1.621 |
1.656 |
| OAK |
SAH |
1.534 |
1.421 |
| SAH |
OAJ |
1.536 |
1.421 |
| SAH |
CAE |
1.690 |
1.762 |
| CAE |
CAF |
1.393 |
1.382 |
| CAE |
CAD |
1.399 |
1.382 |
| CAF |
CAG |
1.386 |
1.383 |
| CAD |
CAC |
1.394 |
1.383 |
| CAG |
CAB |
1.400 |
1.383 |
| CAC |
CAB |
1.409 |
1.382 |
| CAB |
CAA |
1.410 |
1.507 |
| CAA |
NAL |
1.474 |
1.466 |
| NAL |
SBA |
1.813 |
1.657 |
| SBA |
OBB |
1.533 |
1.421 |
| SBA |
OBC |
1.541 |
1.421 |
| SBA |
NAZ |
1.409 |
1.656 |
| CAX |
NAZ |
1.460 |
1.464 |
| CAX |
CAW |
1.492 |
1.529 |
| CAW |
CAV |
1.545 |
1.531 |
| CAW |
NAY |
1.470 |
1.469 |
| CAV |
CAP |
1.377 |
1.507 |
| CAO |
CAP |
1.382 |
1.381 |
| CAO |
CAN |
1.381 |
1.385 |
| CAP |
CAQ |
1.388 |
1.384 |
| FAU |
CAN |
1.278 |
1.351 |
| CAN |
CAM |
1.367 |
1.386 |
| CAQ |
FAS |
1.377 |
1.352 |
| CAQ |
CAR |
1.385 |
1.385 |
| CAM |
CAR |
1.394 |
1.384 |
| CAM |
FAT |
1.318 |
1.351 |
| CAR |
H1 |
1.079 |
1.080 |
| CAO |
H2 |
1.080 |
1.080 |
| CAV |
H3 |
1.100 |
1.090 |
| CAV |
H4 |
1.100 |
1.090 |
| CAW |
H5 |
1.100 |
1.090 |
| NAY |
H6 |
1.000 |
1.009 |
| NAY |
H7 |
1.000 |
1.009 |
| CAX |
H9 |
1.100 |
1.091 |
| CAX |
H10 |
1.100 |
1.090 |
| NAZ |
H11 |
1.000 |
0.971 |
| NAL |
H12 |
1.000 |
0.969 |
| CAA |
H13 |
1.100 |
1.090 |
| CAA |
H14 |
1.100 |
1.090 |
| CAC |
H15 |
1.080 |
1.080 |
| CAD |
H16 |
1.080 |
1.080 |
| NAI |
H17 |
1.000 |
0.970 |
| NAI |
H18 |
1.000 |
0.971 |
| CAF |
H19 |
1.080 |
1.080 |
| CAG |
H20 |
1.079 |
1.079 |
Bond Angles for D1C
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| SAH |
CAE |
CAF |
117.9 |
120.0 |
| CAE |
CAF |
CAG |
119.3 |
120.0 |
| CAE |
CAF |
H19 |
120.3 |
120.0 |
| CAE |
CAD |
H16 |
120.8 |
120.0 |
| CAG |
CAF |
H19 |
120.3 |
120.0 |
| CAF |
CAG |
H20 |
120.1 |
120.0 |
| CAD |
CAC |
H15 |
120.0 |
120.0 |
| CAB |
CAA |
H13 |
108.7 |
109.5 |
| CAB |
CAA |
H14 |
108.7 |
109.5 |
| CAA |
NAL |
H12 |
108.7 |
120.0 |
| OBB |
SBA |
OBC |
107.3 |
123.1 |
| SBA |
NAZ |
H11 |
109.8 |
119.9 |
| NAZ |
CAX |
H9 |
110.7 |
109.4 |
| NAZ |
CAX |
H10 |
110.7 |
109.5 |
| CAX |
NAZ |
H11 |
109.8 |
120.0 |
| CAX |
CAW |
H5 |
110.2 |
109.5 |
| CAW |
CAV |
H3 |
109.0 |
109.4 |
| CAW |
CAV |
H4 |
109.0 |
109.5 |
| NAY |
CAW |
H5 |
110.5 |
109.5 |
| CAW |
NAY |
H6 |
109.5 |
111.0 |
| CAW |
NAY |
H7 |
109.5 |
111.0 |
| CAP |
CAO |
H2 |
121.0 |
120.0 |
| CAQ |
CAR |
H1 |
120.8 |
120.0 |
| CAM |
CAR |
H1 |
120.8 |
120.0 |
| H3 |
CAV |
H4 |
109.5 |
109.4 |
| H6 |
NAY |
H7 |
109.5 |
111.1 |
| H9 |
CAX |
H10 |
109.5 |
109.4 |
| H13 |
CAA |
H14 |
109.5 |
109.5 |
| H17 |
NAI |
H18 |
109.4 |
120.0 |
Torsion Angles for D1C
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAI |
SAH |
CAE |
CAF |
251.8 |
90.0 |
| OAK |
SAH |
CAE |
CAF |
10.9 |
336.4 |
| OAJ |
SAH |
CAE |
CAF |
131.4 |
203.5 |
| SAH |
CAE |
CAF |
CAG |
179.8 |
180.0 |
| SAH |
CAE |
CAF |
H19 |
359.8 |
0.3 |
| SAH |
CAE |
CAD |
H16 |
0.0 |
359.7 |
| CAF |
CAE |
CAD |
H16 |
180.0 |
180.0 |
| CAG |
CAF |
CAE |
H19 |
180.0 |
179.7 |
| CAE |
CAF |
CAG |
H20 |
180.2 |
180.0 |
| CAE |
CAD |
CAC |
H15 |
180.1 |
180.0 |
| CAE |
CAF |
CAG |
H19 |
180.0 |
180.3 |
| CAG |
CAB |
CAA |
H13 |
93.2 |
149.7 |
| CAG |
CAB |
CAA |
H14 |
212.3 |
29.7 |
| CAC |
CAB |
CAA |
H13 |
273.4 |
330.0 |
| CAC |
CAB |
CAA |
H14 |
32.4 |
210.0 |
| CAB |
CAA |
NAL |
H12 |
16.7 |
345.0 |
| H13 |
CAA |
CAB |
H14 |
240.9 |
120.0 |
| NAL |
SBA |
NAZ |
H11 |
90.0 |
245.0 |
| OBB |
SBA |
NAZ |
H11 |
326.6 |
358.5 |
| OBC |
SBA |
NAZ |
H11 |
211.5 |
131.5 |
| SBA |
NAZ |
CAX |
H9 |
306.4 |
45.0 |
| SBA |
NAZ |
CAX |
H10 |
67.9 |
285.0 |
| CAX |
NAZ |
SBA |
H11 |
240.2 |
180.0 |
| SBA |
NAZ |
CAX |
H11 |
119.8 |
180.0 |
| NAZ |
CAX |
CAW |
H5 |
187.4 |
65.1 |
| H9 |
CAX |
NAZ |
H10 |
238.5 |
119.9 |
| CAX |
CAW |
CAV |
H3 |
302.0 |
65.0 |
| CAX |
CAW |
CAV |
H4 |
61.4 |
305.1 |
| NAY |
CAW |
CAX |
H5 |
238.9 |
240.0 |
| CAX |
CAW |
NAY |
H6 |
180.0 |
300.0 |
| CAX |
CAW |
NAY |
H7 |
300.0 |
64.0 |
| H3 |
CAV |
CAW |
H4 |
240.6 |
119.9 |
| CAX |
CAW |
NAY |
H5 |
120.9 |
120.0 |
| NAY |
CAW |
CAV |
H3 |
184.0 |
305.0 |
| NAY |
CAW |
CAV |
H4 |
303.4 |
185.1 |
| H6 |
NAY |
CAW |
H7 |
240.0 |
236.0 |
| CAV |
CAP |
CAO |
H2 |
1.1 |
359.4 |
| CAP |
CAQ |
CAR |
H1 |
179.9 |
180.2 |
| CAN |
CAM |
CAR |
H1 |
180.4 |
180.0 |
| CAM |
CAR |
CAQ |
H1 |
180.0 |
180.1 |
| CAQ |
CAR |
CAM |
H1 |
180.0 |
179.9 |
| FAT |
CAM |
CAR |
H1 |
359.5 |
0.1 |
| CAW |
CAV |
H3 |
H4 |
119.1 |
240.1 |
| CAW |
CAV |
H4 |
H3 |
240.9 |
119.9 |
| H5 |
CAW |
CAV |
H3 |
60.2 |
185.0 |
| H5 |
CAW |
CAV |
H4 |
179.6 |
65.1 |
| H5 |
CAW |
NAY |
H6 |
59.1 |
179.9 |
| H5 |
CAW |
NAY |
H7 |
179.1 |
304.0 |
| H6 |
NAY |
CAW |
H5 |
59.1 |
179.9 |
| CAW |
NAY |
H6 |
H7 |
120.0 |
124.0 |
| H7 |
NAY |
CAW |
H5 |
179.1 |
304.0 |
| CAW |
NAY |
H7 |
H6 |
240.0 |
236.0 |
| NAZ |
CAX |
H9 |
H10 |
122.3 |
240.0 |
| H9 |
CAX |
NAZ |
H11 |
186.5 |
225.0 |
| H9 |
CAX |
CAW |
H5 |
68.1 |
185.0 |
| NAZ |
CAX |
H10 |
H9 |
237.7 |
119.9 |
| H10 |
CAX |
NAZ |
H11 |
308.1 |
105.0 |
| H10 |
CAX |
CAW |
H5 |
306.6 |
305.0 |
| H11 |
NAZ |
CAX |
H9 |
186.5 |
225.0 |
| H11 |
NAZ |
CAX |
H10 |
308.1 |
105.0 |
| CAB |
CAA |
H13 |
H14 |
118.6 |
240.0 |
| H13 |
CAA |
NAL |
H12 |
256.3 |
105.0 |
| CAB |
CAA |
H14 |
H13 |
241.4 |
120.0 |
| H14 |
CAA |
NAL |
H12 |
137.2 |
225.0 |
| H16 |
CAD |
CAC |
H15 |
0.1 |
0.0 |
| CAE |
CAF |
H19 |
CAG |
180.0 |
179.7 |
| H19 |
CAF |
CAG |
H20 |
0.2 |
359.7 |
| H20 |
CAG |
CAF |
H19 |
0.2 |
359.7 |