PDB Chemical Component D1A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D1A

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	N7	1.235	1.218
N7	O2	1.231	1.218
N7	C3	1.400	1.480
C3	C2	1.395	1.377
C3	C4	1.384	1.392
C2	C1	1.397	1.389
C4	N1	1.349	1.375
C4	C5	1.369	1.408
N1	C8	1.368	1.381
C8	C7	1.383	1.359
C8	C9	1.472	1.470
C7	C5	1.422	1.416
C5	C6	1.393	1.401
C6	C1	1.397	1.364
C9	O1	1.229	1.217
C9	N2	1.332	1.347
N2	C10	1.400	1.397
C10	C15	1.394	1.390
C10	C11	1.381	1.391
C15	C14	1.367	1.377
C14	C13	1.382	1.397
C13	C12	1.397	1.398
C13	C16	1.494	1.474
C12	C11	1.395	1.378
C16	C17	1.500	1.507
C16	N3	1.271	1.297
N3	N4	1.266	1.401
N4	C18	1.331	1.377
C18	N6	1.312	1.376
C18	N5	1.256	1.304
C2	H2	1.080	1.080
C1	H1	1.080	1.081
N1	HA	1.000	0.970
C7	H7	1.081	1.080
C6	H6	1.080	1.081
N2	HB	1.000	0.971
C15	H15	1.080	1.080
C11	H11	1.080	1.080
C14	H14	1.080	1.081
C12	H12	1.080	1.079
C17	H171	1.100	1.090
C17	H172	1.100	1.090
C17	H173	1.100	1.090
N6	H61N	1.000	0.970
N6	H62N	1.000	0.970
N5	H5N	1.000	0.970
N4	H4N	1.000	0.971

Bond Angles for D1A

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	N7	O2	118.7	120.0
O3	N7	C3	121.0	120.0
O2	N7	C3	120.3	120.0
N7	C3	C2	122.6	120.1
N7	C3	C4	118.6	120.1
C2	C3	C4	118.9	119.8
C3	C2	C1	120.3	120.6
C3	C2	H2	119.8	119.7
C3	C4	N1	132.4	133.2
C3	C4	C5	121.0	119.4
C2	C1	C6	120.1	120.6
C1	C2	H2	119.8	119.7
C2	C1	H1	119.9	119.7
N1	C4	C5	106.6	107.4
C4	N1	C8	110.9	108.8
C4	N1	HA	124.6	125.6
C4	C5	C7	109.4	107.0
C4	C5	C6	121.1	119.7
N1	C8	C7	108.1	109.2
N1	C8	C9	124.8	125.4
C8	N1	HA	124.6	125.6
C7	C8	C9	127.0	125.4
C8	C7	C5	105.1	107.7
C8	C7	H7	127.5	126.2
C8	C9	O1	118.1	120.0
C8	C9	N2	117.4	120.0
C7	C5	C6	129.5	133.4
C5	C7	H7	127.5	126.1
C5	C6	C1	118.5	119.8
C5	C6	H6	120.8	120.1
C6	C1	H1	119.9	119.7
C1	C6	H6	120.7	120.1
O1	C9	N2	124.5	120.0
C9	N2	C10	126.0	120.0
C9	N2	HB	117.0	120.0
N2	C10	C15	117.0	120.0
N2	C10	C11	123.9	119.8
C10	N2	HB	117.0	120.0
C15	C10	C11	119.0	120.2
C10	C15	C14	121.8	120.1
C10	C15	H15	119.1	120.0
C10	C11	C12	119.2	120.1
C10	C11	H11	120.4	120.0
C15	C14	C13	120.0	120.0
C14	C15	H15	119.1	119.9
C15	C14	H14	120.0	120.1
C14	C13	C12	118.8	119.8
C14	C13	C16	119.4	120.1
C13	C14	H14	120.0	120.0
C12	C13	C16	121.8	120.1
C13	C12	C11	121.2	119.9
C13	C12	H12	119.4	120.1
C13	C16	C17	121.3	120.0
C13	C16	N3	118.9	120.0
C12	C11	H11	120.4	119.9
C11	C12	H12	119.4	120.0
C17	C16	N3	119.8	120.0
C16	C17	H171	109.5	109.4
C16	C17	H172	109.5	109.5
C16	C17	H173	109.4	109.5
C16	N3	N4	122.2	120.0
N3	N4	C18	115.6	120.0
N3	N4	H4N	122.2	120.0
N4	C18	N6	122.5	120.0
N4	C18	N5	119.1	120.0
C18	N4	H4N	122.2	120.0
N6	C18	N5	118.3	120.0
C18	N6	H61N	120.0	120.0
C18	N6	H62N	120.0	119.9
C18	N5	H5N	112.0	120.0
H171	C17	H172	109.4	109.5
H171	C17	H173	109.5	109.4
H172	C17	H173	109.5	109.6
H61N	N6	H62N	120.0	120.1

Torsion Angles for D1A

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	N7	O3	C3	178.2	180.2
O3	N7	C3	C2	174.8	359.9
O3	N7	C3	C4	355.9	179.7
O3	N7	O2	C3	181.8	179.8
O2	N7	C3	C2	356.7	179.7
O2	N7	C3	C4	177.8	359.5
O3	N7	C3	O2	178.1	180.2
C2	C3	N7	C4	178.9	180.2
N7	C3	C2	C1	181.2	180.0
N7	C3	C2	H2	1.1	0.1
N7	C3	C4	N1	358.4	360.0
N7	C3	C4	C5	179.0	180.0
N7	C3	C2	C4	181.1	179.8
C2	C3	C4	N1	179.4	179.8
C2	C3	C4	C5	0.0	359.8
C3	C2	C1	C6	0.3	0.1
C1	C2	C3	H2	180.0	179.9
C3	C2	C1	H1	180.4	180.0
N7	C3	C4	C2	178.9	180.2
C4	C3	C2	C1	0.1	0.2
C4	C3	C2	H2	180.0	180.3
N1	C4	C3	C5	179.4	180.0
C3	C4	N1	C8	181.6	180.0
C3	C4	N1	HA	1.6	359.9
C3	C4	C5	C7	179.5	180.0
C3	C4	C5	C6	359.5	360.0
C1	C2	C3	C4	0.1	0.2
C3	C2	C1	H2	180.0	180.1
C5	C6	C1	C2	359.2	359.6
C6	C1	C2	H1	180.0	180.1
C2	C1	C6	H6	179.2	180.0
C3	C4	N1	C5	180.5	180.0
N1	C4	C5	C7	360.0	0.0
N1	C4	C5	C6	180.0	180.0
C4	N1	C8	C7	358.2	359.9
C4	N1	C8	C9	182.5	180.0
C8	N1	C4	HA	180.0	180.1
C3	C4	C5	N1	179.6	180.0
C5	C4	N1	C8	1.1	0.0
C5	C4	N1	HA	181.1	179.9
C8	C7	C5	C4	359.0	360.0
C7	C5	C4	C6	180.0	180.1
C4	C5	C7	H7	179.0	180.0
C4	C5	C6	C1	0.9	0.4
C4	C5	C6	H6	180.8	180.0
C8	N1	C4	C5	1.1	0.0
C4	N1	C8	HA	180.0	179.9
C7	C8	N1	C9	175.7	180.0
N1	C8	C7	C5	1.6	0.1
N1	C8	C7	H7	181.6	180.0
N1	C8	C9	O1	2.6	179.9
N1	C8	C9	N2	181.5	0.0
C4	C5	C7	C8	359.0	360.0
N1	C8	C7	C9	184.4	180.0
C7	C8	N1	HA	178.2	180.0
C7	C8	C9	O1	187.6	360.0
C7	C8	C9	N2	6.6	180.0
C8	C7	C5	C6	179.0	180.0
C5	C7	C8	H7	180.0	180.1
N1	C8	C9	C7	174.9	180.0
C9	C8	N1	HA	2.5	0.1
C9	C8	C7	C5	177.3	180.0
C9	C8	C7	H7	357.2	360.0
O1	C9	C8	N2	181.1	179.9
C8	C9	N2	C10	184.2	174.8
C8	C9	N2	HB	4.2	354.7
C4	C5	C7	C6	180.0	179.9
C5	C7	C8	C9	177.3	180.0
C8	C7	C5	H7	180.0	179.9
C7	C5	C6	C1	180.8	180.3
C7	C5	C6	H6	0.8	359.9
C2	C1	C6	C5	359.2	359.6
C4	C5	C6	C7	180.0	180.1
C6	C5	C7	H7	359.0	0.1
C5	C6	C1	H1	179.2	179.7
C1	C6	C5	H6	180.0	180.4
C6	C1	C2	H2	180.4	180.0
C2	C1	C6	H1	180.0	179.9
C5	C6	C1	H6	180.0	179.6
C8	C9	O1	N2	178.9	180.1
O1	C9	N2	C10	3.1	354.8
O1	C9	N2	HB	183.1	174.7
C8	C9	N2	O1	181.1	179.9
C9	N2	C10	C15	176.4	146.6
C9	N2	C10	C11	359.5	326.3
C10	N2	C9	HB	180.0	180.1
C9	N2	C10	HB	180.0	179.9
C15	C10	N2	C11	176.9	180.3
N2	C10	C15	C14	181.7	180.0
N2	C10	C15	H15	1.7	360.0
N2	C10	C11	C12	177.8	179.7
N2	C10	C11	H11	357.8	0.1
N2	C10	C15	C11	182.9	179.7
C15	C10	N2	HB	356.5	326.6
C15	C10	C11	C12	1.0	359.4
C15	C10	C11	H11	181.0	179.8
C10	C15	C14	C13	0.0	0.0
C14	C15	C10	H15	180.0	180.0
C10	C15	C14	H14	180.0	180.0
N2	C10	C11	C15	176.9	180.3
C11	C10	N2	HB	179.5	146.3
C11	C10	C15	C14	358.8	0.3
C11	C10	C15	H15	178.8	180.3
C13	C12	C11	C10	0.4	0.6
C12	C11	C10	H11	180.0	179.7
C10	C11	C12	H12	180.4	180.3
C14	C15	C10	C11	358.8	0.3
C10	C15	C14	H15	180.0	180.0
C15	C14	C13	C12	1.4	360.0
C15	C14	C13	C16	179.4	180.0
C13	C14	C15	H14	180.0	180.1
C13	C14	C15	H15	180.0	180.0
C15	C14	C13	H14	180.0	179.9
C12	C13	C14	C16	182.0	180.0
C14	C13	C12	C11	358.4	359.7
C14	C13	C12	H12	178.4	180.0
C14	C13	C16	C17	158.2	180.0
C14	C13	C16	N3	335.3	360.0
C10	C11	C12	C13	0.4	0.6
C14	C13	C12	C16	178.0	180.0
C12	C13	C14	H14	181.4	180.0
C12	C13	C16	C17	336.2	360.0
C12	C13	C16	N3	153.3	180.0
C13	C12	C11	H11	180.4	180.2
C11	C12	C13	H12	180.0	179.8
C14	C13	C16	C12	182.0	180.0
C16	C13	C14	H14	359.4	0.0
C16	C13	C12	C11	180.4	179.7
C16	C13	C12	H12	0.4	360.0
C17	C16	C13	N3	182.9	180.0
C13	C16	C17	H171	180.0	90.0
C13	C16	C17	H172	300.0	210.0
C13	C16	C17	H173	60.0	330.1
C13	C16	N3	N4	179.5	180.0
C10	C11	C12	H11	180.0	180.3
C11	C12	C13	C16	180.4	179.7
C13	C12	C11	H12	180.0	180.2
C13	C16	C17	N3	177.1	180.0
C17	C16	N3	N4	356.7	360.0
H171	C17	C16	H172	240.0	240.0
H171	C17	C16	H173	120.0	119.9
H172	C17	C16	H173	240.0	239.9
C13	C16	N3	C17	182.8	180.0
N3	C16	C17	H171	2.9	270.0
N3	C16	C17	H172	122.9	30.0
N3	C16	C17	H173	242.9	150.1
C16	N3	N4	C18	178.5	180.0
C16	N3	N4	H4N	358.5	0.1
N3	N4	C18	N6	180.3	180.0
N3	N4	C18	N5	355.9	0.1
C18	N4	N3	H4N	180.0	179.9
N3	N4	C18	H4N	180.0	180.1
N6	C18	N4	N5	184.4	180.0
N4	C18	N6	H61N	175.6	360.0
N4	C18	N6	H62N	355.6	180.1
N4	C18	N5	H5N	184.2	180.0
N4	C18	N6	N5	175.6	180.0
N6	C18	N4	H4N	0.3	359.9
N6	C18	N5	H5N	360.0	0.1
H61N	N6	C18	H62N	180.0	179.9
N4	C18	N5	N6	184.2	180.0
N5	C18	N4	H4N	175.9	180.0
N5	C18	N6	H61N	360.0	179.9
N5	C18	N6	H62N	180.0	0.0
H2	C2	C3	C4	180.0	180.3
C3	C2	H2	C1	180.0	179.9
H2	C2	C1	C6	180.4	180.0
H2	C2	C1	H1	0.4	359.9
C2	C1	H1	C6	180.0	180.1
H1	C1	C2	H2	0.4	359.9
H1	C1	C6	H6	359.2	0.1
HA	N1	C4	C5	181.1	179.9
C4	N1	HA	C8	180.0	180.1
HA	N1	C8	C7	178.2	180.0
HA	N1	C8	C9	2.5	0.1
H7	C7	C8	C9	357.2	360.0
C8	C7	H7	C5	180.0	180.1
H7	C7	C5	C6	359.0	0.1
C5	C6	H6	C1	180.0	180.4
H6	C6	C1	H1	359.2	0.1
C9	N2	HB	C10	180.0	180.1
HB	N2	C10	C15	356.5	326.6
HB	N2	C10	C11	179.5	146.3
H15	C15	C10	C11	178.8	180.3
C10	C15	H15	C14	180.0	180.0
H15	C15	C14	C13	180.0	180.0
H15	C15	C14	H14	360.0	359.9
C10	C11	H11	C12	180.0	179.7
H11	C11	C12	H12	0.4	0.0
C15	C14	H14	C13	180.0	180.1
H14	C14	C15	H15	360.0	359.9
H14	C14	C13	C12	181.4	180.0
H14	C14	C13	C16	359.4	0.0
H12	C12	C13	C16	0.4	360.0
C13	C12	H12	C11	180.0	179.8
H12	C12	C11	H11	0.4	0.0
H171	C17	C16	N3	2.9	270.0
C16	C17	H171	H172	120.0	120.0
C16	C17	H171	H173	240.0	240.0
H172	C17	H171	H173	120.0	120.1
H172	C17	C16	N3	122.9	30.0
C16	C17	H172	H171	240.0	240.0
C16	C17	H172	H173	120.0	120.0
H171	C17	H172	H173	240.0	240.0
H173	C17	C16	N3	242.9	150.1
C16	C17	H173	H171	120.0	119.9
C16	C17	H173	H172	240.0	240.0
H171	C17	H173	H172	120.0	120.0
H61N	N6	C18	N5	360.0	179.9
C18	N6	H61N	H62N	180.0	180.1
H62N	N6	C18	N5	180.0	0.0
C18	N6	H62N	H61N	180.0	179.9
N3	N4	H4N	C18	180.0	179.9
H4N	N4	C18	N6	0.3	359.9
H4N	N4	C18	N5	175.9	180.0