PDB Chemical Component D15

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D15

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAO CAY 1.404 1.404
CAO CBB 1.377 1.377
CAY CL1 1.724 1.724
CAY CAI 1.371 1.371
CAI CAH 1.363 1.363
CAH CAL 1.371 1.371
CAL CBB 1.381 1.381
CBB CBF 1.516 1.516
CBF CAR 1.506 1.506
CBF CAX 1.545 1.545
CAR CAQ 1.519 1.519
CAQ NAA 1.448 1.448
CAX OAC 1.241 1.241
CAX NAT 1.339 1.339
NAT CAZ 1.365 1.365
CAZ CAP 1.444 1.444
CAZ CAM 1.370 1.370
CAP CBE 1.427 1.427
CBE CBD 1.388 1.388
CBE CBC 1.420 1.420
CAM CAN 1.394 1.394
CAN CBD 1.390 1.390
CBD NAV 1.344 1.344
NAV NAS 1.240 1.240
NAS CBC 1.322 1.322
CBC NAU 1.331 1.331
NAU CAW 1.331 1.331
CAW OAB 1.218 1.218
CAW CBA 1.558 1.558
CBA CAJ 1.398 1.398
CBA CAK 1.377 1.377
CAJ CAF 1.397 1.397
CAF CAE 1.396 1.396
CAE CAG 1.382 1.382
CAG CAK 1.394 1.394
CAO HAO 1.080 1.080
CAI HAI 1.080 1.080
CAH HAH 1.080 1.080
CAL HAL 1.080 1.080
CBF HBF 1.100 1.100
CAR HAR1 1.100 1.100
CAR HAR2 1.100 1.100
CAQ HAQ1 1.100 1.100
CAQ HAQ2 1.100 1.100
NAA HAA1 0.999 1.000
NAA HAA2 1.000 1.000
NAT HAT 1.000 1.001
CAP HAP 1.080 1.080
CAM HAM 1.080 1.080
CAN HAN 1.080 1.080
NAV HAV 1.000 1.000
NAU HAU 1.000 1.000
CAJ HAJ 1.080 1.080
CAK HAK 1.080 1.080
CAF HAF 1.080 1.080
CAE HAE 1.080 1.080
CAG HAG 1.080 1.080

Bond Angles for D15

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAY CAO CBB 115.4 115.4
CAO CAY CL1 124.2 124.2
CAO CAY CAI 122.7 122.7
CAY CAO HAO 122.3 122.3
CAO CBB CAL 121.4 121.4
CAO CBB CBF 125.5 125.5
CBB CAO HAO 122.3 122.3
CL1 CAY CAI 113.1 113.1
CAY CAI CAH 120.9 120.9
CAY CAI HAI 119.5 119.5
CAI CAH CAL 117.4 117.4
CAH CAI HAI 119.5 119.5
CAI CAH HAH 121.3 121.3
CAH CAL CBB 122.2 122.2
CAL CAH HAH 121.3 121.3
CAH CAL HAL 118.9 118.9
CAL CBB CBF 113.1 113.1
CBB CAL HAL 118.9 118.9
CBB CBF CAR 110.9 110.9
CBB CBF CAX 111.0 111.0
CBB CBF HBF 113.2 113.2
CAR CBF CAX 121.5 121.5
CBF CAR CAQ 99.5 99.5
CAR CBF HBF 99.6 99.6
CBF CAR HAR1 112.9 112.9
CBF CAR HAR2 115.0 115.0
CBF CAX OAC 116.4 116.4
CBF CAX NAT 121.0 121.0
CAX CBF HBF 99.5 99.5
CAR CAQ NAA 112.8 112.8
CAQ CAR HAR1 112.9 112.9
CAQ CAR HAR2 115.0 115.0
CAR CAQ HAQ1 108.4 108.4
CAR CAQ HAQ2 107.7 107.7
NAA CAQ HAQ1 108.4 108.4
NAA CAQ HAQ2 107.6 107.6
CAQ NAA HAA1 109.5 109.5
CAQ NAA HAA2 109.5 109.5
OAC CAX NAT 122.4 122.4
CAX NAT CAZ 118.1 118.1
CAX NAT HAT 121.0 120.9
NAT CAZ CAP 126.6 126.6
NAT CAZ CAM 116.0 116.0
CAZ NAT HAT 120.9 120.9
CAP CAZ CAM 117.4 117.4
CAZ CAP CBE 122.8 122.8
CAZ CAP HAP 118.6 118.6
CAZ CAM CAN 119.4 119.4
CAZ CAM HAM 120.3 120.3
CAP CBE CBD 117.1 117.1
CAP CBE CBC 141.4 141.4
CBE CAP HAP 118.6 118.6
CBD CBE CBC 101.5 101.5
CBE CBD CAN 119.3 119.3
CBE CBD NAV 109.2 109.2
CBE CBC NAS 108.3 108.3
CBE CBC NAU 132.2 132.2
CAM CAN CBD 123.9 123.9
CAN CAM HAM 120.3 120.3
CAM CAN HAN 118.0 118.0
CAN CBD NAV 131.5 131.5
CBD CAN HAN 118.0 118.0
CBD NAV NAS 109.7 109.7
CBD NAV HAV 125.2 125.2
NAV NAS CBC 111.3 111.3
NAS NAV HAV 125.2 125.2
NAS CBC NAU 119.2 119.2
CBC NAU CAW 123.8 123.8
CBC NAU HAU 118.1 118.1
NAU CAW OAB 122.5 122.5
NAU CAW CBA 118.7 118.7
CAW NAU HAU 118.1 118.1
OAB CAW CBA 118.8 118.8
CAW CBA CAJ 120.4 120.4
CAW CBA CAK 122.2 122.2
CAJ CBA CAK 117.4 117.4
CBA CAJ CAF 121.4 121.4
CBA CAJ HAJ 119.3 119.3
CBA CAK CAG 120.9 120.9
CBA CAK HAK 119.5 119.5
CAJ CAF CAE 121.0 121.0
CAF CAJ HAJ 119.3 119.3
CAJ CAF HAF 119.5 119.5
CAF CAE CAG 116.7 116.7
CAE CAF HAF 119.5 119.5
CAF CAE HAE 121.6 121.6
CAE CAG CAK 122.5 122.5
CAG CAE HAE 121.6 121.6
CAE CAG HAG 118.7 118.7
CAG CAK HAK 119.6 119.6
CAK CAG HAG 118.7 118.7
HAR1 CAR HAR2 102.1 102.1
HAQ1 CAQ HAQ2 112.1 112.1
HAA1 NAA HAA2 109.4 109.4

Torsion Angles for D15

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAY CAO CBB CAL 358.6 358.6
CAY CAO CBB CBF 179.4 179.4
CBB CAO CAY HAO 180.0 180.0
CL1 CAY CAO CAI 179.6 179.6
CAO CAY CAI CAH 0.3 0.3
CAO CAY CAI HAI 180.3 180.3
CBB CAO CAY CL1 180.2 180.2
CBB CAO CAY CAI 0.6 0.6
CAY CAO CBB HAO 180.0 180.0
CAH CAL CBB CAO 1.5 1.5
CAL CBB CAO CBF 179.1 179.1
CAO CBB CAL HAL 181.5 181.5
CAO CBB CBF CAR 41.7 41.7
CAO CBB CBF CAX 263.6 263.6
CAO CBB CBF HBF 152.7 152.7
CL1 CAY CAO CBB 180.2 180.2
CAO CAY CL1 CAI 180.4 180.4
CL1 CAY CAO HAO 0.2 0.2
CL1 CAY CAI CAH 180.7 180.7
CL1 CAY CAI HAI 0.6 0.6
CAI CAY CAO CBB 0.6 0.6
CAO CAY CAI CL1 179.7 179.7
CAI CAY CAO HAO 180.6 180.6
CAY CAI CAH CAL 359.6 359.6
CAH CAI CAY HAI 180.0 180.0
CAY CAI CAH HAH 179.6 179.6
CAY CAI CAH HAI 180.0 180.0
CAI CAH CAL CBB 359.5 359.5
CAL CAH CAI HAH 180.0 180.0
CAI CAH CAL HAL 179.5 179.5
CAO CBB CAL CAH 1.5 1.5
CAL CAH CAI HAI 179.6 179.6
CAI CAH CAL HAH 180.0 180.0
CAH CAL CBB CBF 180.7 180.7
CBB CAL CAH HAL 180.0 180.0
CAO CBB CAL CBF 180.8 180.8
CAL CBB CAO HAO 178.5 178.5
CBB CAL CAH HAH 179.5 179.5
CAH CAL CBB HAL 180.0 180.0
CAL CBB CBF CAR 222.5 222.5
CAL CBB CBF CAX 84.4 84.4
CAL CBB CBF HBF 333.5 333.5
CAO CBB CBF CAL 179.2 179.2
CBF CBB CAO HAO 359.4 359.4
CBF CBB CAL HAL 0.7 0.7
CAR CBF CBB CAX 138.1 138.1
CBB CBF CAR CAQ 77.2 77.2
CAR CBF CBB HBF 249.0 249.0
CBB CBF CAR HAR1 197.2 197.2
CBB CBF CAR HAR2 313.8 313.8
CBB CBF CAX OAC 257.3 257.3
CBB CBF CAX NAT 71.7 71.7
CAX CBF CBB HBF 110.9 110.9
CBB CBF CAR CAX 226.9 226.9
CBB CBF CAR HBF 119.5 119.5
CAR CBF CAX OAC 124.3 124.3
CAR CBF CAX NAT 298.7 298.7
CAX CBF CAR HBF 252.5 252.5
CBF CAR CAQ NAA 185.3 185.3
CAQ CAR CBF HAR1 240.0 240.0
CAQ CAR CBF HAR2 123.4 123.4
CBF CAR CAQ HAQ1 305.3 305.3
CBF CAR CAQ HAQ2 66.7 66.7
HAR1 CAR CBF HAR2 243.4 243.4
CBB CBF CAX CAR 133.0 133.0
CBB CBF CAX HBF 240.6 240.6
CAX CBF CAR CAQ 210.3 210.3
CAR CBF CAX HBF 107.5 107.5
CAX CBF CAR HAR1 330.3 330.3
CAX CBF CAR HAR2 86.9 86.9
OAC CAX CBF NAT 185.6 185.6
CBF CAX NAT CAZ 185.2 185.2
CBF CAX NAT HAT 5.3 5.2
CAQ CAR CBF CAX 210.3 210.3
CAQ CAR CBF HBF 317.7 317.7
CBF CAR CAQ HAR1 120.0 120.0
CBF CAR CAQ HAR2 236.6 236.6
NAA CAQ CAR HAQ1 240.0 240.0
NAA CAQ CAR HAQ2 118.6 118.6
CAR CAQ NAA HAA1 1.6 1.6
CAR CAQ NAA HAA2 121.5 121.5
HAR1 CAR CAQ HAR2 116.6 116.6
HAQ1 CAQ CAR HAQ2 238.6 238.6
NAA CAQ CAR HAR1 65.3 65.3
NAA CAQ CAR HAR2 308.7 308.7
CAR CAQ NAA HAQ1 120.0 120.0
CAR CAQ NAA HAQ2 241.4 241.4
HAQ1 CAQ NAA HAQ2 121.4 121.4
HAA1 NAA CAQ HAA2 240.0 240.0
CBF CAX OAC NAT 174.3 174.3
OAC CAX CBF HBF 16.7 16.7
OAC CAX NAT CAZ 359.3 359.3
OAC CAX NAT HAT 179.3 179.3
CBF CAX NAT OAC 185.9 185.9
NAT CAX CBF HBF 191.1 191.1
CAX NAT CAZ CAP 19.9 19.9
CAX NAT CAZ CAM 198.1 198.1
CAZ NAT CAX HAT 180.0 180.0
CAX NAT CAZ HAT 180.0 180.0
CAP CAZ NAT CAM 181.8 181.8
NAT CAZ CAP CBE 179.5 179.5
NAT CAZ CAP HAP 359.5 359.5
NAT CAZ CAM CAN 180.9 180.9
NAT CAZ CAM HAM 0.9 0.9
NAT CAZ CAP CAM 178.2 178.2
CAP CAZ NAT HAT 199.9 199.9
CAP CAZ CAM CAN 359.3 359.3
CAP CAZ CAM HAM 179.3 179.3
CAZ CAP CBE CBD 359.2 359.2
CAZ CAP CBE CBC 181.4 181.4
CBE CAP CAZ HAP 180.0 180.0
NAT CAZ CAM CAP 181.6 181.6
CAM CAZ NAT HAT 18.1 18.1
CAM CAZ CAP CBE 1.3 1.3
CAM CAZ CAP HAP 181.3 181.3
CAZ CAM CAN CBD 359.7 359.7
CAN CAM CAZ HAM 180.0 180.0
CAZ CAM CAN HAN 179.6 179.6
CBE CAP CAZ CAM 1.3 1.3
CAZ CAP CBE HAP 180.0 180.0
CBD CBE CAP CBC 177.8 177.8
CAP CBE CBD CAN 359.8 359.8
CAP CBE CBD NAV 179.7 179.7
CAP CBE CBC NAS 180.0 180.0
CAP CBE CBC NAU 353.9 353.9
CAP CBE CBD CBC 181.4 181.4
CBD CBE CAP HAP 179.2 179.2
CBD CBE CBC NAS 2.0 2.0
CBD CBE CBC NAU 176.0 176.0
CAM CAN CBD CBE 0.8 0.8
CAN CBD CBE NAV 180.0 180.0
CBE CBD CAN HAN 180.9 180.9
CBE CBD NAV NAS 0.8 0.8
CBE CBD NAV HAV 180.8 180.8
CAP CBE CBC CBD 178.0 178.0
CBC CBE CAP HAP 1.4 1.4
CBC CBE CBD CAN 178.3 178.3
CBC CBE CBD NAV 358.3 358.3
NAV NAS CBC CBE 358.3 358.3
NAS CBC CBE NAU 186.1 186.1
CBE CBC NAU CAW 28.8 28.8
CBE CBC NAU HAU 208.8 208.8
CAZ CAM CAN HAM 180.0 180.0
CBE CBD CAN CAM 0.8 0.8
CAM CAN CBD NAV 180.9 180.9
CBD CAN CAM HAN 180.0 180.0
CAN CBD CBE CBC 178.3 178.3
CBE CBD CAN NAV 179.9 179.9
CBD CAN CAM HAM 179.6 179.6
CAM CAN CBD HAN 180.0 180.0
CAN CBD NAV NAS 180.7 180.7
CAN CBD NAV HAV 0.7 0.7
NAV CBD CBE CBC 358.3 358.3
CBE CBD NAV CAN 180.1 180.1
NAV CBD CAN HAN 0.9 0.9
CBD NAV NAS CBC 0.6 0.6
NAS NAV CBD HAV 180.0 180.0
CBE CBC NAS NAV 358.3 358.3
CBD NAV NAS HAV 180.0 180.0
NAV NAS CBC NAU 183.4 183.4
CBE CBC NAS NAU 174.9 174.9
CBC NAS NAV HAV 180.6 180.6
NAS CBC NAU CAW 202.2 202.2
NAS CBC NAU HAU 22.2 22.2
CBE CBC NAU NAS 186.6 186.6
CBC NAU CAW OAB 8.1 8.1
CBC NAU CAW CBA 187.2 187.2
CAW NAU CBC HAU 180.0 180.0
CBC NAU CAW HAU 180.0 180.0
OAB CAW NAU CBA 180.9 180.9
NAU CAW CBA CAJ 186.1 186.1
NAU CAW CBA CAK 6.7 6.7
NAU CAW OAB CBA 179.1 179.1
OAB CAW NAU HAU 188.1 188.1
OAB CAW CBA CAJ 5.2 5.2
OAB CAW CBA CAK 185.9 185.9
NAU CAW CBA OAB 180.9 180.9
CBA CAW NAU HAU 7.2 7.2
CAJ CBA CAW CAK 179.3 179.3
CAW CBA CAJ CAF 180.3 180.3
CAW CBA CAJ HAJ 0.3 0.3
CAW CBA CAK CAG 180.2 180.2
CAW CBA CAK HAK 0.2 0.2
CAW CBA CAJ CAK 180.7 180.7
CAJ CBA CAK CAG 0.9 0.9
CAJ CBA CAK HAK 180.9 180.8
CBA CAJ CAF CAE 0.3 0.3
CAF CAJ CBA HAJ 180.0 180.0
CBA CAJ CAF HAF 180.3 180.3
CAW CBA CAK CAJ 179.3 179.3
CAK CBA CAJ CAF 359.7 359.7
CAK CBA CAJ HAJ 179.7 179.7
CAE CAG CAK CBA 358.5 358.5
CAG CAK CBA HAK 180.0 180.0
CBA CAK CAG HAG 178.5 178.5
CAF CAJ CBA CAK 359.7 359.7
CBA CAJ CAF HAJ 180.0 180.0
CAJ CAF CAE CAG 359.2 359.2
CAE CAF CAJ HAF 180.0 180.0
CAJ CAF CAE HAE 179.2 179.2
CAE CAF CAJ HAJ 180.3 180.3
CAJ CAF CAE HAF 180.0 180.0
CAF CAE CAG CAK 1.4 1.4
CAG CAE CAF HAE 180.0 180.0
CAF CAE CAG HAG 181.4 181.4
CBA CAK CAG CAE 358.5 358.5
CAG CAE CAF HAF 179.1 179.1
CAF CAE CAG HAE 180.0 180.0
CAE CAG CAK HAK 178.5 178.6
CAK CAG CAE HAG 180.0 180.0
CBA CAK CAG HAK 180.0 180.0
CAK CAG CAE HAE 181.4 181.4
CAE CAG CAK HAG 180.0 180.0
CAY CAO HAO CBB 180.0 180.0
HAO CAO CAY CL1 0.2 0.2
HAO CAO CAY CAI 180.6 180.6
HAO CAO CBB CAL 178.5 178.5
HAO CAO CBB CBF 359.4 359.4
CAY CAI HAI CAH 180.0 180.0
HAI CAI CAH CAL 179.6 179.6
HAI CAI CAH HAH 359.6 359.6
CAI CAH HAH CAL 180.0 180.0
HAH CAH CAI HAI 359.6 359.6
HAH CAH CAL CBB 179.5 179.5
HAH CAH CAL HAL 359.5 359.5
CAH CAL HAL CBB 180.0 180.0
HAL CAL CAH HAH 359.5 359.5
HAL CAL CBB CBF 0.7 0.7
CBB CBF HBF CAR 242.2 242.2
CBB CBF HBF CAX 117.8 117.8
CAR CBF HBF CAX 235.6 235.6
HBF CBF CAR CAQ 317.7 317.7
HBF CBF CAR HAR1 77.8 77.8
HBF CBF CAR HAR2 194.3 194.3
HBF CBF CAX OAC 16.7 16.7
HBF CBF CAX NAT 191.1 191.1
HAR1 CAR CBF CAX 330.3 330.3
CBF CAR HAR1 CAQ 248.0 248.0
HAR1 CAR CBF HBF 77.8 77.8
CBF CAR HAR1 HAR2 124.0 124.0
HAR1 CAR CAQ NAA 65.3 65.3
CAQ CAR HAR1 HAR2 236.0 236.0
HAR1 CAR CAQ HAQ1 185.3 185.3
HAR1 CAR CAQ HAQ2 306.7 306.7
HAR2 CAR CBF CAX 86.9 86.9
CBF CAR HAR2 CAQ 114.7 114.7
HAR2 CAR CBF HBF 194.3 194.3
CBF CAR HAR2 HAR1 237.4 237.4
HAR2 CAR CAQ NAA 308.7 308.7
CAQ CAR HAR2 HAR1 122.6 122.6
HAR2 CAR CAQ HAQ1 68.7 68.7
HAR2 CAR CAQ HAQ2 190.2 190.2
CAR CAQ HAQ1 NAA 237.3 237.3
HAQ1 CAQ CAR HAR1 185.3 185.3
HAQ1 CAQ CAR HAR2 68.7 68.7
CAR CAQ HAQ1 HAQ2 118.7 118.7
NAA CAQ HAQ1 HAQ2 241.4 241.4
HAQ1 CAQ NAA HAA1 241.6 241.6
HAQ1 CAQ NAA HAA2 1.5 1.5
CAR CAQ HAQ2 NAA 121.8 121.8
HAQ2 CAQ CAR HAR1 306.7 306.7
HAQ2 CAQ CAR HAR2 190.2 190.2
CAR CAQ HAQ2 HAQ1 240.9 240.9
NAA CAQ HAQ2 HAQ1 119.1 119.1
HAQ2 CAQ NAA HAA1 120.1 120.2
HAQ2 CAQ NAA HAA2 240.1 240.1
HAA1 NAA CAQ HAQ1 241.6 241.6
HAA1 NAA CAQ HAQ2 120.1 120.2
CAQ NAA HAA1 HAA2 120.0 120.0
HAA2 NAA CAQ HAQ1 1.5 1.5
HAA2 NAA CAQ HAQ2 240.1 240.1
CAQ NAA HAA2 HAA1 240.0 240.0
CAX NAT HAT CAZ 180.0 180.0
HAT NAT CAZ CAP 199.9 199.9
HAT NAT CAZ CAM 18.1 18.1
HAP CAP CAZ CAM 181.3 181.3
CAZ CAP HAP CBE 180.0 180.0
HAP CAP CBE CBD 179.2 179.2
HAP CAP CBE CBC 1.4 1.4
CAZ CAM HAM CAN 180.0 180.0
HAM CAM CAN CBD 179.6 179.6
HAM CAM CAN HAN 359.6 359.6
CAM CAN HAN CBD 180.0 180.0
HAN CAN CAM HAM 359.6 359.6
HAN CAN CBD NAV 0.9 0.9
CBD NAV HAV NAS 180.0 180.0
HAV NAV NAS CBC 180.6 180.6
CBC NAU HAU CAW 180.0 180.0
HAU NAU CAW OAB 188.1 188.1
HAU NAU CAW CBA 7.2 7.2
HAJ CAJ CBA CAK 179.7 179.7
CBA CAJ HAJ CAF 180.0 180.0
HAJ CAJ CAF CAE 180.3 180.3
HAJ CAJ CAF HAF 0.4 0.4
CBA CAK HAK CAG 180.0 180.0
HAK CAK CAG HAG 358.5 358.6
CAJ CAF HAF CAE 180.0 180.0
HAF CAF CAJ HAJ 0.4 0.4
HAF CAF CAE CAG 179.1 179.1
HAF CAF CAE HAE 359.2 359.2
CAF CAE HAE CAG 180.0 180.0
HAE CAE CAF HAF 359.2 359.2
HAE CAE CAG CAK 181.4 181.4
HAE CAE CAG HAG 1.4 1.4
CAE CAG HAG CAK 180.0 180.0
HAG CAG CAE HAE 1.4 1.4
HAG CAG CAK HAK 358.5 358.6