PDB Chemical Component D12

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D12

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.523 1.529
C1 H11 1.114 1.090
C1 H12 1.114 1.089
C1 H13 1.115 1.090
C2 C3 1.524 1.529
C2 H21 1.116 1.090
C2 H22 1.114 1.090
C3 C4 1.524 1.530
C3 H31 1.115 1.090
C3 H32 1.114 1.090
C4 C5 1.525 1.530
C4 H41 1.115 1.090
C4 H42 1.114 1.090
C5 C6 1.528 1.529
C5 H51 1.115 1.090
C5 H52 1.115 1.090
C6 C7 1.525 1.530
C6 H61 1.116 1.090
C6 H62 1.114 1.090
C7 C8 1.529 1.529
C7 H71 1.115 1.090
C7 H72 1.115 1.090
C8 C9 1.530 1.530
C8 H81 1.115 1.090
C8 H82 1.115 1.090
C9 C10 1.530 1.530
C9 H91 1.114 1.090
C9 H92 1.115 1.090
C10 C11 1.529 1.529
C10 H101 1.116 1.090
C10 H102 1.115 1.090
C11 C12 1.526 1.529
C11 H111 1.115 1.090
C11 H112 1.115 1.090
C12 H121 1.115 1.089
C12 H122 1.116 1.090
C12 H123 1.115 1.090

Bond Angles for D12

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H11 110.9 109.4
C2 C1 H12 111.6 109.6
C2 C1 H13 111.7 109.4
C1 C2 C3 110.9 109.5
C1 C2 H21 111.7 109.4
C1 C2 H22 111.7 109.4
H11 C1 H12 111.7 109.5
H11 C1 H13 111.7 109.5
H12 C1 H13 98.8 109.5
C3 C2 H21 111.7 109.5
C3 C2 H22 111.7 109.5
C2 C3 C4 108.9 109.5
C2 C3 H31 112.5 109.5
C2 C3 H32 112.4 109.5
H21 C2 H22 98.7 109.4
C4 C3 H31 112.4 109.4
C4 C3 H32 112.4 109.4
C3 C4 C5 110.6 109.5
C3 C4 H41 111.8 109.5
C3 C4 H42 111.8 109.5
H31 C3 H32 98.1 109.5
C5 C4 H41 111.8 109.4
C5 C4 H42 111.8 109.4
C4 C5 C6 109.3 109.5
C4 C5 H51 112.3 109.4
C4 C5 H52 112.3 109.4
H41 C4 H42 98.6 109.5
C6 C5 H51 112.2 109.5
C6 C5 H52 112.3 109.5
C5 C6 C7 110.8 109.5
C5 C6 H61 111.7 109.5
C5 C6 H62 111.8 109.5
H51 C5 H52 98.2 109.5
C7 C6 H61 111.7 109.4
C7 C6 H62 111.7 109.4
C6 C7 C8 110.9 109.5
C6 C7 H71 111.7 109.4
C6 C7 H72 111.7 109.4
H61 C6 H62 98.6 109.5
C8 C7 H71 111.7 109.5
C8 C7 H72 111.7 109.5
C7 C8 C9 109.5 109.5
C7 C8 H81 112.2 109.5
C7 C8 H82 112.3 109.5
H71 C7 H72 98.7 109.5
C9 C8 H81 112.2 109.4
C9 C8 H82 112.2 109.4
C8 C9 C10 111.2 109.5
C8 C9 H91 111.6 109.4
C8 C9 H92 111.6 109.4
H81 C8 H82 98.2 109.5
C10 C9 H91 111.5 109.5
C10 C9 H92 111.5 109.5
C9 C10 C11 109.9 109.5
C9 C10 H101 112.0 109.4
C9 C10 H102 112.1 109.4
H91 C9 H92 98.9 109.5
C11 C10 H101 112.1 109.5
C11 C10 H102 112.0 109.5
C10 C11 C12 111.0 109.5
C10 C11 H111 111.6 109.5
C10 C11 H112 111.6 109.5
H101 C10 H102 98.3 109.5
C12 C11 H111 111.6 109.4
C12 C11 H112 111.6 109.4
C11 C12 H121 111.1 109.6
C11 C12 H122 111.7 109.4
C11 C12 H123 111.6 109.4
H111 C11 H112 98.8 109.4
H121 C12 H122 111.5 109.5
H121 C12 H123 111.7 109.5
H122 C12 H123 98.7 109.5

Torsion Angles for D12

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H11 C1 C2 H12 234.8 240.0
H11 C1 C2 H13 125.3 120.0
H12 C1 C2 H13 250.5 240.0
C3 C2 C1 H21 234.8 239.9
C3 C2 C1 H22 125.2 120.1
C1 C2 C3 C4 175.3 180.0
C1 C2 C3 H31 300.5 300.0
C1 C2 C3 H32 50.1 60.0
H21 C2 C1 H22 250.5 240.1
C2 C1 H11 H12 125.2 120.1
C2 C1 H11 H13 234.7 240.1
H11 C1 C2 C3 180.0 60.0
H11 C1 C2 H21 305.3 180.0
H11 C1 C2 H22 54.8 299.9
H12 C1 H11 H13 109.6 120.0
C2 C1 H12 H11 235.2 240.0
C2 C1 H12 H13 117.6 120.0
H12 C1 C2 C3 305.2 180.0
H12 C1 C2 H21 70.5 300.1
H12 C1 C2 H22 180.0 59.9
H11 C1 H12 H13 242.3 240.0
C2 C1 H13 H11 124.8 119.9
C2 C1 H13 H12 242.5 239.9
H13 C1 C2 C3 54.7 300.0
H13 C1 C2 H21 180.0 60.1
H13 C1 C2 H22 289.5 180.0
H11 C1 H13 H12 117.6 120.0
C3 C2 C1 H11 180.0 60.0
C3 C2 C1 H12 305.2 180.0
C3 C2 C1 H13 54.7 300.0
C1 C2 C3 H21 125.3 120.0
C1 C2 C3 H22 234.7 240.0
H21 C2 C3 H22 109.5 120.0
C4 C3 C2 H31 234.8 240.0
C4 C3 C2 H32 125.2 120.0
C2 C3 C4 C5 188.2 180.0
C2 C3 C4 H41 313.4 300.0
C2 C3 C4 H42 63.0 60.0
H31 C3 C2 H32 250.4 240.0
H21 C2 C1 H11 305.3 180.0
H21 C2 C1 H12 70.5 300.1
H21 C2 C1 H13 180.0 60.1
C1 C2 H21 C3 235.2 239.9
C1 C2 H21 H22 117.6 119.9
C3 C2 H21 H22 242.4 240.0
H21 C2 C3 C4 50.0 60.0
H21 C2 C3 H31 175.3 180.0
H21 C2 C3 H32 284.8 300.0
H22 C2 C1 H11 54.8 299.9
H22 C2 C1 H12 180.0 59.9
H22 C2 C1 H13 289.5 180.0
C1 C2 H22 C3 124.8 120.1
C1 C2 H22 H21 242.4 240.1
C3 C2 H22 H21 117.5 120.0
H22 C2 C3 C4 300.6 300.0
H22 C2 C3 H31 65.8 60.0
H22 C2 C3 H32 175.4 180.0
C4 C3 C2 H21 50.0 60.0
C4 C3 C2 H22 300.6 300.0
C2 C3 C4 H31 125.3 120.0
C2 C3 C4 H32 234.8 240.0
H31 C3 C4 H32 109.5 120.0
C5 C4 C3 H41 234.8 240.0
C5 C4 C3 H42 125.2 120.0
C3 C4 C5 C6 178.7 180.0
C3 C4 C5 H51 303.9 300.0
C3 C4 C5 H52 53.4 60.0
H41 C4 C3 H42 250.5 240.0
H31 C3 C2 H21 175.3 180.0
H31 C3 C2 H22 65.8 60.0
C2 C3 H31 C4 236.7 240.0
C2 C3 H31 H32 118.4 120.0
C4 C3 H31 H32 241.7 240.1
H31 C3 C4 C5 62.9 60.0
H31 C3 C4 H41 188.2 180.0
H31 C3 C4 H42 297.7 300.0
H32 C3 C2 H21 284.8 300.0
H32 C3 C2 H22 175.4 180.0
C2 C3 H32 C4 123.3 120.0
C2 C3 H32 H31 241.6 240.0
C4 C3 H32 H31 118.3 119.9
H32 C3 C4 C5 313.4 300.0
H32 C3 C4 H41 78.7 60.0
H32 C3 C4 H42 188.2 180.0
C5 C4 C3 H31 62.9 60.0
C5 C4 C3 H32 313.4 300.0
C3 C4 C5 H41 125.3 120.0
C3 C4 C5 H42 234.7 240.0
H41 C4 C5 H42 109.5 120.0
C6 C5 C4 H51 234.8 240.0
C6 C5 C4 H52 125.2 120.0
C4 C5 C6 C7 187.6 180.0
C4 C5 C6 H61 312.9 300.0
C4 C5 C6 H62 62.4 60.0
H51 C5 C4 H52 250.5 240.0
H41 C4 C3 H31 188.2 180.0
H41 C4 C3 H32 78.7 60.0
C3 C4 H41 C5 235.4 239.9
C3 C4 H41 H42 117.8 120.0
C5 C4 H41 H42 242.3 240.1
H41 C4 C5 C6 53.4 60.0
H41 C4 C5 H51 178.7 180.0
H41 C4 C5 H52 288.2 300.0
H42 C4 C3 H31 297.7 300.0
H42 C4 C3 H32 188.2 180.0
C3 C4 H42 C5 124.6 120.1
C3 C4 H42 H41 242.3 240.0
C5 C4 H42 H41 117.7 119.9
H42 C4 C5 C6 304.0 300.0
H42 C4 C5 H51 69.2 60.0
H42 C4 C5 H52 178.7 180.0
C6 C5 C4 H41 53.4 60.0
C6 C5 C4 H42 304.0 300.0
C4 C5 C6 H51 125.3 120.0
C4 C5 C6 H52 234.7 240.0
H51 C5 C6 H52 109.5 120.0
C7 C6 C5 H61 234.7 240.0
C7 C6 C5 H62 125.2 120.0
C5 C6 C7 C8 184.2 180.0
C5 C6 C7 H71 309.4 300.0
C5 C6 C7 H72 59.0 60.0
H61 C6 C5 H62 250.5 240.0
H51 C5 C4 H41 178.7 180.0
H51 C5 C4 H42 69.2 60.0
C4 C5 H51 C6 236.4 240.0
C4 C5 H51 H52 118.2 119.9
C6 C5 H51 H52 241.8 240.0
H51 C5 C6 C7 62.3 60.0
H51 C5 C6 H61 187.6 180.0
H51 C5 C6 H62 297.1 300.0
H52 C5 C4 H41 288.2 300.0
H52 C5 C4 H42 178.7 180.0
C4 C5 H52 C6 123.6 120.0
C4 C5 H52 H51 241.8 240.1
C6 C5 H52 H51 118.2 120.0
H52 C5 C6 C7 312.9 300.0
H52 C5 C6 H61 78.2 60.0
H52 C5 C6 H62 187.6 180.0
C7 C6 C5 H51 62.3 60.0
C7 C6 C5 H52 312.9 300.0
C5 C6 C7 H61 125.3 120.0
C5 C6 C7 H62 234.7 240.0
H61 C6 C7 H62 109.4 120.0
C8 C7 C6 H71 234.8 240.0
C8 C7 C6 H72 125.2 120.0
C6 C7 C8 C9 174.2 180.0
C6 C7 C8 H81 299.5 300.0
C6 C7 C8 H82 48.9 60.0
H71 C7 C6 H72 250.5 240.0
H61 C6 C5 H51 187.6 180.0
H61 C6 C5 H52 78.2 60.0
C5 C6 H61 C7 235.3 240.0
C5 C6 H61 H62 117.7 120.0
C7 C6 H61 H62 242.4 240.0
H61 C6 C7 C8 58.9 60.0
H61 C6 C7 H71 184.1 180.0
H61 C6 C7 H72 293.7 300.0
H62 C6 C5 H51 297.1 300.0
H62 C6 C5 H52 187.6 180.0
C5 C6 H62 C7 124.7 120.0
C5 C6 H62 H61 242.3 240.0
C7 C6 H62 H61 117.6 120.0
H62 C6 C7 C8 309.5 300.0
H62 C6 C7 H71 74.7 60.0
H62 C6 C7 H72 184.2 180.0
C8 C7 C6 H61 58.9 60.0
C8 C7 C6 H62 309.5 300.0
C6 C7 C8 H71 125.2 120.0
C6 C7 C8 H72 234.7 240.0
H71 C7 C8 H72 109.5 120.0
C9 C8 C7 H81 234.7 240.0
C9 C8 C7 H82 125.3 120.0
C7 C8 C9 C10 207.5 180.0
C7 C8 C9 H91 332.7 300.0
C7 C8 C9 H92 82.3 60.0
H81 C8 C7 H82 250.5 240.0
H71 C7 C6 H61 184.1 180.0
H71 C7 C6 H62 74.7 60.0
C6 C7 H71 C8 235.2 240.0
C6 C7 H71 H72 117.6 120.0
C8 C7 H71 H72 242.4 240.0
H71 C7 C8 C9 49.0 60.0
H71 C7 C8 H81 174.2 180.0
H71 C7 C8 H82 283.7 300.0
H72 C7 C6 H61 293.7 300.0
H72 C7 C6 H62 184.2 180.0
C6 C7 H72 C8 124.8 120.0
C6 C7 H72 H71 242.4 240.0
C8 C7 H72 H71 117.6 120.0
H72 C7 C8 C9 299.5 300.0
H72 C7 C8 H81 64.7 60.0
H72 C7 C8 H82 174.2 180.0
C9 C8 C7 H71 49.0 60.0
C9 C8 C7 H72 299.5 300.0
C7 C8 C9 H81 125.3 120.0
C7 C8 C9 H82 234.7 240.0
H81 C8 C9 H82 109.4 120.0
C10 C9 C8 H91 234.8 240.0
C10 C9 C8 H92 125.2 120.0
C8 C9 C10 C11 160.8 180.0
C8 C9 C10 H101 286.1 300.0
C8 C9 C10 H102 35.6 60.0
H91 C9 C8 H92 250.5 240.0
H81 C8 C7 H71 174.2 180.0
H81 C8 C7 H72 64.7 60.0
C7 C8 H81 C9 236.2 240.0
C7 C8 H81 H82 118.2 120.0
C9 C8 H81 H82 241.9 240.1
H81 C8 C9 C10 82.2 60.0
H81 C8 C9 H91 207.5 180.0
H81 C8 C9 H92 317.0 300.0
H82 C8 C7 H71 283.7 300.0
H82 C8 C7 H72 174.2 180.0
C7 C8 H82 C9 123.8 120.0
C7 C8 H82 H81 241.9 240.0
C9 C8 H82 H81 118.1 119.9
H82 C8 C9 C10 332.8 300.0
H82 C8 C9 H91 98.1 60.0
H82 C8 C9 H92 207.6 180.0
C10 C9 C8 H81 82.2 60.0
C10 C9 C8 H82 332.8 300.0
C8 C9 C10 H91 125.3 120.0
C8 C9 C10 H92 234.8 240.0
H91 C9 C10 H92 109.5 120.0
C11 C10 C9 H101 234.7 240.0
C11 C10 C9 H102 125.3 120.0
C9 C10 C11 C12 177.7 180.0
C9 C10 C11 H111 303.0 300.0
C9 C10 C11 H112 52.5 60.0
H101 C10 C9 H102 250.6 240.0
H91 C9 C8 H81 207.5 180.0
H91 C9 C8 H82 98.1 60.0
C8 C9 H91 C10 234.9 239.9
C8 C9 H91 H92 117.5 119.9
C10 C9 H91 H92 242.6 240.0
H91 C9 C10 C11 35.6 60.0
H91 C9 C10 H101 160.8 180.0
H91 C9 C10 H102 270.3 300.0
H92 C9 C8 H81 317.0 300.0
H92 C9 C8 H82 207.6 180.0
C8 C9 H92 C10 125.1 120.1
C8 C9 H92 H91 242.5 240.1
C10 C9 H92 H91 117.4 120.0
H92 C9 C10 C11 286.1 300.0
H92 C9 C10 H101 51.4 60.0
H92 C9 C10 H102 160.8 180.0
C11 C10 C9 H91 35.6 60.0
C11 C10 C9 H92 286.1 300.0
C9 C10 C11 H101 125.3 120.0
C9 C10 C11 H102 234.7 240.0
H101 C10 C11 H102 109.4 120.0
C12 C11 C10 H111 234.8 240.0
C12 C11 C10 H112 125.3 120.0
C10 C11 C12 H121 180.0 180.0
C10 C11 C12 H122 305.3 300.0
C10 C11 C12 H123 54.7 60.0
H111 C11 C10 H112 250.5 240.0
H101 C10 C9 H91 160.8 180.0
H101 C10 C9 H92 51.4 60.0
C9 C10 H101 C11 235.9 240.0
C9 C10 H101 H102 118.0 119.9
C11 C10 H101 H102 242.1 240.0
H101 C10 C11 C12 52.4 60.0
H101 C10 C11 H111 177.7 180.0
H101 C10 C11 H112 287.2 300.0
H102 C10 C9 H91 270.3 300.0
H102 C10 C9 H92 160.8 180.0
C9 C10 H102 C11 124.1 120.0
C9 C10 H102 H101 242.0 240.1
C11 C10 H102 H101 117.9 120.0
H102 C10 C11 C12 303.0 300.0
H102 C10 C11 H111 68.3 60.0
H102 C10 C11 H112 177.8 180.0
C12 C11 C10 H101 52.4 60.0
C12 C11 C10 H102 303.0 300.0
C10 C11 C12 H111 125.2 120.1
C10 C11 C12 H112 234.8 239.9
H111 C11 C12 H112 109.5 119.9
H121 C12 C11 H122 234.8 240.0
H121 C12 C11 H123 125.4 120.0
H122 C12 C11 H123 250.6 240.0
H111 C11 C10 H101 177.7 180.0
H111 C11 C10 H102 68.3 60.0
C10 C11 H111 C12 235.1 239.9
C10 C11 H111 H112 117.5 120.0
C12 C11 H111 H112 242.5 240.1
H111 C11 C12 H121 54.8 59.9
H111 C11 C12 H122 180.0 180.0
H111 C11 C12 H123 289.4 299.9
H112 C11 C10 H101 287.2 300.0
H112 C11 C10 H102 177.8 180.0
C10 C11 H112 C12 124.9 120.1
C10 C11 H112 H111 242.5 240.0
C12 C11 H112 H111 117.5 119.9
H112 C11 C12 H121 305.3 300.1
H112 C11 C12 H122 70.5 60.1
H112 C11 C12 H123 179.9 180.0
H121 C12 C11 H111 54.8 59.9
H121 C12 C11 H112 305.3 300.1
C11 C12 H121 H122 125.3 120.0
C11 C12 H121 H123 234.6 240.0
H122 C12 H121 H123 109.4 120.0
H122 C12 C11 H111 180.0 180.0
H122 C12 C11 H112 70.5 60.1
C11 C12 H122 H121 235.0 239.9
C11 C12 H122 H123 117.5 119.9
H121 C12 H122 H123 242.5 240.0
H123 C12 C11 H111 289.4 299.9
H123 C12 C11 H112 179.9 180.0
C11 C12 H123 H121 125.0 120.1
C11 C12 H123 H122 242.5 240.1
H121 C12 H123 H122 117.4 120.0