PDB Chemical Component D11
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D11
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.484 |
1.468 |
| N |
H |
0.999 |
1.010 |
| N |
H2 |
1.000 |
1.008 |
| CA |
CB |
1.485 |
1.531 |
| CA |
C |
1.531 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG2 |
1.529 |
1.530 |
| CB |
OG1 |
1.395 |
1.429 |
| CB |
HB |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.091 |
| OG1 |
P |
1.595 |
1.610 |
| P |
O1P |
1.638 |
1.480 |
| P |
O2P |
1.623 |
1.610 |
| P |
O3P |
1.623 |
1.610 |
| O2P |
HO2P |
0.950 |
0.967 |
| O3P |
HO3P |
0.950 |
0.966 |
| C |
O |
1.375 |
1.209 |
| C |
OXT |
1.302 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for D11
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
CB |
121.8 |
109.5 |
| N |
CA |
C |
108.3 |
109.5 |
| N |
CA |
HA |
101.6 |
109.6 |
| H |
N |
H2 |
109.4 |
111.0 |
| CB |
CA |
C |
110.3 |
109.5 |
| CB |
CA |
HA |
99.1 |
109.4 |
| CA |
CB |
CG2 |
118.1 |
109.5 |
| CA |
CB |
OG1 |
109.2 |
109.5 |
| CA |
CB |
HB |
101.8 |
109.4 |
| C |
CA |
HA |
115.4 |
109.5 |
| CA |
C |
O |
107.7 |
120.0 |
| CA |
C |
OXT |
129.9 |
120.0 |
| CG2 |
CB |
OG1 |
102.7 |
109.5 |
| CG2 |
CB |
HB |
108.4 |
109.4 |
| CB |
CG2 |
HG21 |
109.5 |
109.5 |
| CB |
CG2 |
HG22 |
109.5 |
109.5 |
| CB |
CG2 |
HG23 |
109.5 |
109.4 |
| OG1 |
CB |
HB |
117.4 |
109.5 |
| CB |
OG1 |
P |
127.3 |
123.0 |
| HG21 |
CG2 |
HG22 |
109.4 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.5 |
109.4 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
| OG1 |
P |
O1P |
109.6 |
109.5 |
| OG1 |
P |
O2P |
109.6 |
109.5 |
| OG1 |
P |
O3P |
98.2 |
109.5 |
| O1P |
P |
O2P |
107.6 |
109.5 |
| O1P |
P |
O3P |
112.2 |
109.4 |
| O2P |
P |
O3P |
119.1 |
109.5 |
| P |
O2P |
HO2P |
109.5 |
114.0 |
| P |
O3P |
HO3P |
109.5 |
114.0 |
| O |
C |
OXT |
122.4 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for D11
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
129.5 |
120.0 |
| CB |
CA |
N |
HA |
251.4 |
240.0 |
| N |
CA |
CB |
CG2 |
172.4 |
60.1 |
| N |
CA |
CB |
OG1 |
55.7 |
300.0 |
| N |
CA |
CB |
HB |
290.9 |
180.0 |
| C |
CA |
N |
HA |
121.9 |
120.0 |
| N |
CA |
C |
O |
61.8 |
20.0 |
| N |
CA |
C |
OXT |
244.9 |
200.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
70.7 |
296.0 |
| H |
N |
CA |
C |
301.2 |
176.0 |
| H |
N |
CA |
HA |
179.3 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
CB |
190.7 |
59.9 |
| H2 |
N |
CA |
C |
61.2 |
300.0 |
| H2 |
N |
CA |
HA |
299.3 |
179.9 |
| CB |
CA |
N |
H |
70.7 |
296.0 |
| CB |
CA |
N |
H2 |
190.7 |
59.9 |
| N |
CA |
CB |
C |
231.4 |
240.0 |
| N |
CA |
CB |
HA |
109.9 |
120.1 |
| C |
CA |
CB |
HA |
238.5 |
240.1 |
| CB |
CA |
C |
O |
286.1 |
260.0 |
| CB |
CA |
C |
OXT |
109.2 |
80.0 |
| CG2 |
CB |
CA |
OG1 |
116.7 |
120.0 |
| CG2 |
CB |
CA |
HB |
241.5 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
291.5 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
51.5 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
171.5 |
300.0 |
| OG1 |
CB |
CA |
HB |
124.8 |
120.0 |
| CA |
CB |
OG1 |
P |
257.3 |
240.0 |
| C |
CA |
N |
H |
301.2 |
176.0 |
| C |
CA |
N |
H2 |
61.2 |
300.0 |
| N |
CA |
C |
CB |
135.6 |
120.0 |
| N |
CA |
C |
HA |
246.9 |
239.9 |
| CB |
CA |
C |
HA |
111.3 |
119.9 |
| C |
CA |
CB |
CG2 |
301.0 |
180.0 |
| C |
CA |
CB |
OG1 |
184.3 |
60.0 |
| C |
CA |
CB |
HB |
59.5 |
300.0 |
| O |
C |
CA |
OXT |
176.9 |
180.0 |
| CA |
C |
OXT |
HXT |
176.5 |
180.0 |
| HA |
CA |
N |
H |
179.3 |
56.0 |
| HA |
CA |
N |
H2 |
299.3 |
179.9 |
| N |
CA |
HA |
CB |
234.7 |
240.0 |
| N |
CA |
HA |
C |
116.9 |
120.0 |
| CB |
CA |
HA |
C |
242.2 |
240.1 |
| HA |
CA |
CB |
CG2 |
62.5 |
300.0 |
| HA |
CA |
CB |
OG1 |
305.8 |
180.0 |
| HA |
CA |
CB |
HB |
181.0 |
59.9 |
| HA |
CA |
C |
O |
174.9 |
140.1 |
| HA |
CA |
C |
OXT |
357.9 |
320.1 |
| CG2 |
CB |
CA |
C |
301.0 |
180.0 |
| CG2 |
CB |
CA |
HA |
62.5 |
300.0 |
| CA |
CB |
CG2 |
OG1 |
239.9 |
240.0 |
| CA |
CB |
CG2 |
HB |
115.0 |
120.0 |
| OG1 |
CB |
CG2 |
HB |
235.1 |
240.0 |
| CG2 |
CB |
OG1 |
P |
131.1 |
120.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
239.9 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
119.9 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| OG1 |
CB |
CA |
C |
184.3 |
60.0 |
| OG1 |
CB |
CA |
HA |
305.8 |
180.0 |
| CA |
CB |
OG1 |
CG2 |
126.1 |
120.0 |
| CA |
CB |
OG1 |
HB |
244.9 |
240.0 |
| CG2 |
CB |
OG1 |
HB |
118.7 |
120.0 |
| OG1 |
CB |
CG2 |
HG21 |
51.6 |
180.0 |
| OG1 |
CB |
CG2 |
HG22 |
171.6 |
300.0 |
| OG1 |
CB |
CG2 |
HG23 |
291.6 |
60.0 |
| CB |
OG1 |
P |
O1P |
67.3 |
305.0 |
| CB |
OG1 |
P |
O2P |
309.4 |
65.0 |
| CB |
OG1 |
P |
O3P |
184.5 |
185.0 |
| HB |
CB |
CA |
C |
59.5 |
300.0 |
| HB |
CB |
CA |
HA |
181.0 |
59.9 |
| CA |
CB |
HB |
CG2 |
234.8 |
240.0 |
| CA |
CB |
HB |
OG1 |
119.1 |
120.0 |
| CG2 |
CB |
HB |
OG1 |
244.3 |
240.0 |
| HB |
CB |
CG2 |
HG21 |
176.5 |
300.0 |
| HB |
CB |
CG2 |
HG22 |
296.5 |
60.1 |
| HB |
CB |
CG2 |
HG23 |
56.5 |
180.1 |
| HB |
CB |
OG1 |
P |
12.4 |
360.0 |
| HG21 |
CG2 |
CB |
OG1 |
51.6 |
180.0 |
| HG21 |
CG2 |
CB |
HB |
176.5 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
120.1 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
OG1 |
171.6 |
300.0 |
| HG22 |
CG2 |
CB |
HB |
296.5 |
60.1 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
240.0 |
| HG23 |
CG2 |
CB |
OG1 |
291.6 |
60.0 |
| HG23 |
CG2 |
CB |
HB |
56.5 |
180.1 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |
| P |
OG1 |
CB |
HB |
12.4 |
360.0 |
| O1P |
P |
OG1 |
O2P |
117.9 |
240.0 |
| O1P |
P |
OG1 |
O3P |
242.8 |
120.0 |
| O2P |
P |
OG1 |
O3P |
125.0 |
240.0 |
| OG1 |
P |
O2P |
HO2P |
55.6 |
60.0 |
| OG1 |
P |
O3P |
HO3P |
120.8 |
180.0 |
| OG1 |
P |
O1P |
O2P |
240.9 |
120.0 |
| OG1 |
P |
O1P |
O3P |
108.0 |
240.0 |
| O2P |
P |
O1P |
O3P |
227.2 |
120.0 |
| O1P |
P |
O2P |
HO2P |
296.4 |
180.0 |
| O1P |
P |
O3P |
HO3P |
235.9 |
60.1 |
| OG1 |
P |
O2P |
O1P |
119.1 |
240.0 |
| OG1 |
P |
O2P |
O3P |
248.2 |
120.0 |
| O1P |
P |
O2P |
O3P |
129.0 |
240.0 |
| O2P |
P |
O3P |
HO3P |
2.8 |
300.1 |
| OG1 |
P |
O3P |
O1P |
244.8 |
120.0 |
| OG1 |
P |
O3P |
O2P |
117.9 |
240.0 |
| O1P |
P |
O3P |
O2P |
233.1 |
120.0 |
| O3P |
P |
O2P |
HO2P |
167.4 |
300.0 |
| HO2P |
O2P |
P |
O3P |
167.4 |
300.0 |
| O |
C |
CA |
HA |
174.9 |
140.1 |
| CA |
C |
O |
OXT |
182.8 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
HA |
357.9 |
320.1 |
| CA |
C |
OXT |
O |
176.5 |
180.0 |