PDB Chemical Component D10

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D10

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.539 1.530
C1 H11 1.115 1.090
C1 H12 1.116 1.090
C1 H13 1.115 1.090
C2 C3 1.552 1.530
C2 H21 1.115 1.090
C2 H22 1.115 1.090
C3 C4 1.542 1.529
C3 H31 1.115 1.091
C3 H32 1.115 1.091
C4 C5 1.541 1.529
C4 H41 1.114 1.090
C4 H42 1.114 1.090
C5 C6 1.541 1.529
C5 H51 1.115 1.090
C5 H52 1.115 1.090
C6 C7 1.539 1.529
C6 H61 1.114 1.090
C6 H62 1.115 1.090
C7 C8 1.541 1.529
C7 H71 1.115 1.090
C7 H72 1.114 1.090
C8 C9 1.540 1.530
C8 H81 1.115 1.091
C8 H82 1.116 1.091
C9 C10 1.540 1.530
C9 H91 1.115 1.090
C9 H92 1.114 1.090
C10 H101 1.115 1.090
C10 H102 1.116 1.090
C10 H103 1.116 1.090

Bond Angles for D10

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H11 99.0 109.5
C2 C1 H12 116.3 109.5
C2 C1 H13 116.3 109.5
C1 C2 C3 99.0 109.5
C1 C2 H21 116.2 109.5
C1 C2 H22 116.3 109.5
H11 C1 H12 116.3 109.5
H11 C1 H13 116.3 109.5
H12 C1 H13 94.1 109.5
C3 C2 H21 116.2 109.5
C3 C2 H22 116.2 109.5
C2 C3 C4 114.9 109.5
C2 C3 H31 110.2 109.5
C2 C3 H32 110.2 109.5
H21 C2 H22 94.2 109.5
C4 C3 H31 110.2 109.5
C4 C3 H32 110.2 109.5
C3 C4 C5 109.5 109.5
C3 C4 H41 112.2 109.4
C3 C4 H42 112.2 109.4
H31 C3 H32 100.0 109.4
C5 C4 H41 112.2 109.5
C5 C4 H42 112.2 109.5
C4 C5 C6 109.4 109.5
C4 C5 H51 112.2 109.5
C4 C5 H52 112.2 109.5
H41 C4 H42 98.3 109.5
C6 C5 H51 112.3 109.4
C6 C5 H52 112.3 109.4
C5 C6 C7 109.5 109.5
C5 C6 H61 112.2 109.4
C5 C6 H62 112.1 109.4
H51 C5 H52 98.2 109.5
C7 C6 H61 112.2 109.5
C7 C6 H62 112.2 109.5
C6 C7 C8 109.6 109.5
C6 C7 H71 112.1 109.5
C6 C7 H72 112.2 109.5
H61 C6 H62 98.2 109.5
C8 C7 H71 112.2 109.4
C8 C7 H72 112.2 109.4
C7 C8 C9 109.5 109.5
C7 C8 H81 112.2 109.5
C7 C8 H82 112.2 109.5
H71 C7 H72 98.3 109.5
C9 C8 H81 112.2 109.5
C9 C8 H82 112.2 109.5
C8 C9 C10 109.5 109.5
C8 C9 H91 112.2 109.5
C8 C9 H92 112.2 109.5
H81 C8 H82 98.2 109.4
C10 C9 H91 112.2 109.5
C10 C9 H92 112.2 109.5
C9 C10 H101 109.6 109.5
C9 C10 H102 112.2 109.5
C9 C10 H103 112.2 109.5
H91 C9 H92 98.3 109.5
H101 C10 H102 112.2 109.5
H101 C10 H103 112.2 109.5
H102 C10 H103 98.2 109.5

Torsion Angles for D10

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H11 C1 C2 H12 234.7 240.0
H11 C1 C2 H13 125.3 120.0
H12 C1 C2 H13 250.6 240.0
C3 C2 C1 H21 234.8 240.0
C3 C2 C1 H22 125.2 120.0
C1 C2 C3 C4 210.9 180.0
C1 C2 C3 H31 336.1 300.0
C1 C2 C3 H32 85.6 60.0
H21 C2 C1 H22 250.4 240.0
C2 C1 H11 H12 125.3 120.0
C2 C1 H11 H13 234.7 240.0
H11 C1 C2 C3 180.0 180.0
H11 C1 C2 H21 305.2 300.0
H11 C1 C2 H22 54.8 60.0
H12 C1 H11 H13 109.4 120.0
C2 C1 H12 H11 244.1 240.0
C2 C1 H12 H13 122.1 120.0
H12 C1 C2 C3 305.3 300.0
H12 C1 C2 H21 70.5 60.0
H12 C1 C2 H22 180.1 180.0
H11 C1 H12 H13 238.0 240.0
C2 C1 H13 H11 116.0 120.0
C2 C1 H13 H12 238.0 240.0
H13 C1 C2 C3 54.7 60.0
H13 C1 C2 H21 179.9 180.0
H13 C1 C2 H22 289.5 300.0
H11 C1 H13 H12 122.0 120.0
C3 C2 C1 H11 180.0 180.0
C3 C2 C1 H12 305.3 300.0
C3 C2 C1 H13 54.7 60.0
C1 C2 C3 H21 125.2 120.0
C1 C2 C3 H22 234.7 240.0
H21 C2 C3 H22 109.5 120.0
C4 C3 C2 H31 234.7 240.0
C4 C3 C2 H32 125.3 120.0
C2 C3 C4 C5 156.1 180.0
C2 C3 C4 H41 281.4 300.0
C2 C3 C4 H42 30.9 60.0
H31 C3 C2 H32 250.6 240.1
H21 C2 C1 H11 305.2 300.0
H21 C2 C1 H12 70.5 60.0
H21 C2 C1 H13 179.9 180.0
C1 C2 H21 C3 244.1 240.0
C1 C2 H21 H22 122.1 120.0
C3 C2 H21 H22 238.0 240.0
H21 C2 C3 C4 85.6 60.0
H21 C2 C3 H31 210.9 180.0
H21 C2 C3 H32 320.4 300.0
H22 C2 C1 H11 54.8 60.0
H22 C2 C1 H12 180.1 180.0
H22 C2 C1 H13 289.5 300.0
C1 C2 H22 C3 115.9 120.0
C1 C2 H22 H21 237.9 240.0
C3 C2 H22 H21 122.0 120.0
H22 C2 C3 C4 336.1 300.0
H22 C2 C3 H31 101.4 60.0
H22 C2 C3 H32 210.8 180.0
C4 C3 C2 H21 85.6 60.0
C4 C3 C2 H22 336.1 300.0
C2 C3 C4 H31 125.3 120.0
C2 C3 C4 H32 234.7 240.0
H31 C3 C4 H32 109.5 119.9
C5 C4 C3 H41 234.8 240.0
C5 C4 C3 H42 125.3 120.0
C3 C4 C5 C6 179.5 180.0
C3 C4 C5 H51 304.8 300.0
C3 C4 C5 H52 54.2 60.0
H41 C4 C3 H42 250.5 240.0
H31 C3 C2 H21 210.9 180.0
H31 C3 C2 H22 101.4 60.0
C2 C3 H31 C4 232.1 239.9
C2 C3 H31 H32 116.0 120.0
C4 C3 H31 H32 244.0 240.1
H31 C3 C4 C5 30.8 60.0
H31 C3 C4 H41 156.1 180.0
H31 C3 C4 H42 265.6 299.9
H32 C3 C2 H21 320.4 300.0
H32 C3 C2 H22 210.8 180.0
C2 C3 H32 C4 127.9 120.1
C2 C3 H32 H31 244.0 240.0
C4 C3 H32 H31 116.0 119.9
H32 C3 C4 C5 281.4 300.0
H32 C3 C4 H41 46.6 60.1
H32 C3 C4 H42 156.1 180.0
C5 C4 C3 H31 30.8 60.0
C5 C4 C3 H32 281.4 300.0
C3 C4 C5 H41 125.2 120.0
C3 C4 C5 H42 234.7 240.0
H41 C4 C5 H42 109.5 120.0
C6 C5 C4 H51 234.7 240.0
C6 C5 C4 H52 125.3 120.0
C4 C5 C6 C7 325.1 180.0
C4 C5 C6 H61 90.4 300.0
C4 C5 C6 H62 199.8 60.0
H51 C5 C4 H52 250.6 240.0
H41 C4 C3 H31 156.1 180.0
H41 C4 C3 H32 46.6 60.1
C3 C4 H41 C5 236.3 240.0
C3 C4 H41 H42 118.1 120.0
C5 C4 H41 H42 241.8 240.0
H41 C4 C5 C6 54.3 60.0
H41 C4 C5 H51 179.6 180.0
H41 C4 C5 H52 289.0 300.0
H42 C4 C3 H31 265.6 299.9
H42 C4 C3 H32 156.1 180.0
C3 C4 H42 C5 123.7 120.0
C3 C4 H42 H41 241.9 240.0
C5 C4 H42 H41 118.2 120.0
H42 C4 C5 C6 304.7 300.0
H42 C4 C5 H51 70.0 60.0
H42 C4 C5 H52 179.5 180.0
C6 C5 C4 H41 54.3 60.0
C6 C5 C4 H42 304.7 300.0
C4 C5 C6 H51 125.3 120.0
C4 C5 C6 H52 234.8 240.0
H51 C5 C6 H52 109.5 120.0
C7 C6 C5 H61 234.7 240.0
C7 C6 C5 H62 125.2 120.0
C5 C6 C7 C8 242.2 180.0
C5 C6 C7 H71 7.4 300.0
C5 C6 C7 H72 116.9 60.0
H61 C6 C5 H62 250.5 240.0
H51 C5 C4 H41 179.6 180.0
H51 C5 C4 H42 70.0 60.0
C4 C5 H51 C6 236.3 240.0
C4 C5 H51 H52 118.1 120.0
C6 C5 H51 H52 241.8 240.0
H51 C5 C6 C7 199.8 60.0
H51 C5 C6 H61 325.1 180.0
H51 C5 C6 H62 74.5 300.0
H52 C5 C4 H41 289.0 300.0
H52 C5 C4 H42 179.5 180.0
C4 C5 H52 C6 123.7 120.0
C4 C5 H52 H51 241.9 240.0
C6 C5 H52 H51 118.2 120.0
H52 C5 C6 C7 90.3 300.0
H52 C5 C6 H61 215.6 60.0
H52 C5 C6 H62 325.1 180.0
C7 C6 C5 H51 199.8 60.0
C7 C6 C5 H52 90.3 300.0
C5 C6 C7 H61 125.3 120.0
C5 C6 C7 H62 234.8 240.0
H61 C6 C7 H62 109.5 120.0
C8 C7 C6 H71 234.8 240.0
C8 C7 C6 H72 125.3 120.0
C6 C7 C8 C9 196.6 180.0
C6 C7 C8 H81 321.9 300.0
C6 C7 C8 H82 71.3 60.0
H71 C7 C6 H72 250.5 240.0
H61 C6 C5 H51 325.1 180.0
H61 C6 C5 H52 215.6 60.0
C5 C6 H61 C7 236.2 240.0
C5 C6 H61 H62 118.1 120.0
C7 C6 H61 H62 241.8 240.0
H61 C6 C7 C8 116.9 60.0
H61 C6 C7 H71 242.1 180.0
H61 C6 C7 H72 351.6 300.0
H62 C6 C5 H51 74.5 300.0
H62 C6 C5 H52 325.1 180.0
C5 C6 H62 C7 123.7 120.0
C5 C6 H62 H61 241.9 240.0
C7 C6 H62 H61 118.2 120.0
H62 C6 C7 C8 7.4 300.0
H62 C6 C7 H71 132.6 60.0
H62 C6 C7 H72 242.1 180.0
C8 C7 C6 H61 116.9 60.0
C8 C7 C6 H62 7.4 300.0
C6 C7 C8 H71 125.2 120.0
C6 C7 C8 H72 234.7 240.0
H71 C7 C8 H72 109.5 120.0
C9 C8 C7 H81 234.7 240.0
C9 C8 C7 H82 125.3 120.0
C7 C8 C9 C10 189.2 180.0
C7 C8 C9 H91 314.5 300.0
C7 C8 C9 H92 64.0 60.0
H81 C8 C7 H82 250.6 240.1
H71 C7 C6 H61 242.1 180.0
H71 C7 C6 H62 132.6 60.0
C6 C7 H71 C8 236.2 240.0
C6 C7 H71 H72 118.1 120.0
C8 C7 H71 H72 241.9 240.0
H71 C7 C8 C9 71.4 60.0
H71 C7 C8 H81 196.7 180.0
H71 C7 C8 H82 306.1 299.9
H72 C7 C6 H61 351.6 300.0
H72 C7 C6 H62 242.1 180.0
C6 C7 H72 C8 123.8 120.0
C6 C7 H72 H71 241.9 240.0
C8 C7 H72 H71 118.1 120.0
H72 C7 C8 C9 321.8 300.0
H72 C7 C8 H81 87.2 60.1
H72 C7 C8 H82 196.5 180.0
C9 C8 C7 H71 71.4 60.0
C9 C8 C7 H72 321.8 300.0
C7 C8 C9 H81 125.3 120.0
C7 C8 C9 H82 234.7 240.0
H81 C8 C9 H82 109.4 119.9
C10 C9 C8 H91 234.8 240.0
C10 C9 C8 H92 125.3 120.0
C8 C9 C10 H101 180.0 180.0
C8 C9 C10 H102 305.3 300.0
C8 C9 C10 H103 54.7 60.0
H91 C9 C8 H92 250.5 240.0
H81 C8 C7 H71 196.7 180.0
H81 C8 C7 H72 87.2 60.1
C7 C8 H81 C9 236.2 239.9
C7 C8 H81 H82 118.1 119.9
C9 C8 H81 H82 241.9 240.0
H81 C8 C9 C10 64.0 60.0
H81 C8 C9 H91 189.2 180.0
H81 C8 C9 H92 298.7 300.0
H82 C8 C7 H71 306.1 299.9
H82 C8 C7 H72 196.5 180.0
C7 C8 H82 C9 123.8 120.1
C7 C8 H82 H81 242.0 240.1
C9 C8 H82 H81 118.1 120.0
H82 C8 C9 C10 314.5 300.0
H82 C8 C9 H91 79.7 60.0
H82 C8 C9 H92 189.2 180.0
C10 C9 C8 H81 64.0 60.0
C10 C9 C8 H82 314.5 300.0
C8 C9 C10 H91 125.2 120.0
C8 C9 C10 H92 234.7 240.0
H91 C9 C10 H92 109.5 120.0
H101 C10 C9 H102 234.7 240.0
H101 C10 C9 H103 125.3 120.0
H102 C10 C9 H103 250.6 240.0
H91 C9 C8 H81 189.2 180.0
H91 C9 C8 H82 79.7 60.0
C8 C9 H91 C10 236.2 240.0
C8 C9 H91 H92 118.1 120.0
C10 C9 H91 H92 241.9 240.0
H91 C9 C10 H101 54.7 60.0
H91 C9 C10 H102 180.1 180.0
H91 C9 C10 H103 289.5 300.0
H92 C9 C8 H81 298.7 300.0
H92 C9 C8 H82 189.2 180.0
C8 C9 H92 C10 123.8 120.0
C8 C9 H92 H91 241.9 240.0
C10 C9 H92 H91 118.1 120.0
H92 C9 C10 H101 305.2 300.0
H92 C9 C10 H102 70.6 60.0
H92 C9 C10 H103 180.0 180.0
H101 C10 C9 H91 54.7 60.0
H101 C10 C9 H92 305.2 300.0
C9 C10 H101 H102 125.3 120.0
C9 C10 H101 H103 234.7 240.0
H102 C10 H101 H103 109.4 120.0
H102 C10 C9 H91 180.1 180.0
H102 C10 C9 H92 70.6 60.0
C9 C10 H102 H101 236.1 240.0
C9 C10 H102 H103 118.1 120.0
H101 C10 H102 H103 241.9 240.0
H103 C10 C9 H91 289.5 300.0
H103 C10 C9 H92 180.0 180.0
C9 C10 H103 H101 123.8 120.0
C9 C10 H103 H102 241.9 240.0
H101 C10 H103 H102 118.1 120.0