PDB Chemical Component D05

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for D05

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N8	C7	1.367	1.358
N8	C9	1.364	1.354
N8	HN8	1.020	0.970
C7	N6	1.349	1.301
C7	C20	1.525	1.506
N6	C5	1.356	1.341
C5	C4	1.420	1.404
C5	N1	1.392	1.361
C4	C9	1.386	1.463
C4	C3	1.463	1.407
C9	O9	1.234	1.218
N1	N2	1.379	1.401
N1	C11	1.437	1.401
N2	C3	1.352	1.305
C3	C1	1.500	1.507
C11	C16	1.387	1.389
C11	C12	1.407	1.390
C16	C15	1.417	1.383
C16	CL16	1.746	1.735
C12	C13	1.405	1.382
C12	CL12	1.716	1.736
C15	C14	1.410	1.384
C15	H15	1.103	1.079
C13	C14	1.392	1.383
C13	H13	1.103	1.080
C14	CL14	1.792	1.736
C1	C2	1.527	1.530
C1	H11	1.115	1.090
C1	H12	1.115	1.091
C2	H21	1.115	1.091
C2	H22A	1.115	1.090
C2	H23A	1.116	1.089
C20	C21	1.521	1.507
C20	H201	1.115	1.090
C20	H202	1.116	1.090
C21	C22	1.417	1.383
C21	C26	1.405	1.383
C22	C23	1.425	1.385
C22	H22	1.103	1.080
C23	C24	1.405	1.391
C23	O23	1.392	1.361
C24	C25	1.413	1.387
C24	O24	1.389	1.360
C25	C26	1.405	1.382
C25	H25	1.103	1.080
C26	H26	1.103	1.080
O23	H23	0.950	0.967
O24	H24	0.950	0.967

Bond Angles for D05

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C7	N8	C9	119.0	120.3
C7	N8	HN8	120.5	119.8
N8	C7	N6	124.3	123.0
N8	C7	C20	119.5	118.5
C9	N8	HN8	120.4	119.9
N8	C9	C4	119.5	117.5
N8	C9	O9	121.6	121.3
N6	C7	C20	116.1	118.5
C7	N6	C5	117.1	121.9
C7	C20	C21	114.8	109.5
C7	C20	H201	110.3	109.5
C7	C20	H202	110.3	109.5
N6	C5	C4	121.4	119.2
N6	C5	N1	129.2	134.3
C4	C5	N1	109.3	106.6
C5	C4	C9	118.6	118.1
C5	C4	C3	102.6	107.3
C5	N1	N2	109.3	108.3
C5	N1	C11	125.3	125.9
C9	C4	C3	138.8	134.6
C4	C9	O9	118.8	121.3
C4	C3	N2	110.9	108.4
C4	C3	C1	131.8	125.8
N2	N1	C11	125.0	125.8
N1	N2	C3	107.7	109.5
N1	C11	C16	117.8	120.1
N1	C11	C12	126.0	120.0
N2	C3	C1	117.2	125.8
C3	C1	C2	111.0	109.5
C3	C1	H11	111.6	109.5
C3	C1	H12	111.7	109.4
C16	C11	C12	116.1	119.9
C11	C16	C15	122.1	119.9
C11	C16	CL16	116.9	120.0
C11	C12	C13	122.6	119.9
C11	C12	CL12	122.5	120.0
C15	C16	CL16	121.0	120.0
C16	C15	C14	121.1	120.0
C16	C15	H15	119.7	120.0
C13	C12	CL12	114.9	120.1
C12	C13	C14	121.2	120.1
C12	C13	H13	119.9	119.9
C14	C15	H15	119.1	120.0
C15	C14	C13	116.9	120.2
C15	C14	CL14	123.4	119.9
C14	C13	H13	118.9	120.0
C13	C14	CL14	119.7	119.9
C2	C1	H11	111.7	109.5
C2	C1	H12	111.7	109.5
C1	C2	H21	111.0	109.5
C1	C2	H22A	111.7	109.5
C1	C2	H23A	111.7	109.5
H11	C1	H12	98.7	109.5
H21	C2	H22A	111.7	109.5
H21	C2	H23A	111.7	109.4
H22A	C2	H23A	98.7	109.5
C21	C20	H201	110.3	109.5
C21	C20	H202	110.3	109.5
C20	C21	C22	121.3	120.0
C20	C21	C26	118.4	119.9
H201	C20	H202	99.9	109.5
C22	C21	C26	120.2	120.1
C21	C22	C23	118.9	120.0
C21	C22	H22	120.3	120.0
C21	C26	C25	120.9	120.2
C21	C26	H26	119.6	120.0
C23	C22	H22	120.8	120.0
C22	C23	C24	120.1	119.9
C22	C23	O23	122.1	120.1
C24	C23	O23	117.7	120.0
C23	C24	C25	120.6	119.8
C23	C24	O24	119.4	120.1
C23	O23	H23	122.2	106.8
C25	C24	O24	120.0	120.1
C24	C25	C26	119.2	120.0
C24	C25	H25	120.7	119.9
C24	O24	H24	119.4	106.8
C26	C25	H25	120.1	120.1
C25	C26	H26	119.5	119.9

Torsion Angles for D05

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C9	N8	C7	HN8	180.0	180.0
C7	N8	C9	C4	1.4	359.8
C7	N8	C9	O9	178.2	180.0
N6	C7	N8	C20	177.2	180.0
N8	C7	N6	C5	0.8	360.0
N8	C7	C20	C21	281.4	180.0
N8	C7	C20	H201	46.7	300.0
N8	C7	C20	H202	156.1	60.0
C7	N8	C9	HN8	180.0	180.0
C9	N8	C7	N6	358.4	360.0
C9	N8	C7	C20	181.2	180.0
C5	C4	C9	N8	359.5	0.5
N8	C9	C4	C3	178.6	179.6
C4	C9	N8	O9	183.2	179.8
C7	N8	HN8	C9	180.0	180.0
HN8	N8	C7	N6	178.4	180.0
HN8	N8	C7	C20	1.2	360.0
HN8	N8	C9	C4	181.4	179.8
HN8	N8	C9	O9	358.2	360.0
N6	C7	N8	C9	358.4	360.0
N6	C7	N8	HN8	178.4	180.0
N8	C7	N6	C20	182.7	180.0
N6	C7	C20	C21	103.9	0.0
N6	C7	C20	H201	229.3	120.0
N6	C7	C20	H202	338.7	240.0
C7	N6	C5	C4	0.1	0.3
C7	N6	C5	N1	183.0	180.0
C20	C7	N8	C9	181.2	180.0
C20	C7	N8	HN8	1.2	360.0
N8	C7	C20	N6	177.5	180.0
C20	C7	N6	C5	178.2	180.0
C21	C20	C7	H201	234.7	240.0
C21	C20	C7	H202	125.3	120.0
C7	C20	C21	C22	264.4	269.7
C7	C20	C21	C26	83.3	90.0
H201	C20	C7	H202	250.6	240.0
C5	N6	C7	C20	178.2	180.0
C4	C5	N6	N1	177.1	180.3
N6	C5	C4	C9	359.8	359.5
N6	C5	C4	C3	180.4	180.1
N6	C5	N1	N2	179.4	180.1
N6	C5	N1	C11	6.3	0.0
N8	C9	C4	C5	359.5	0.5
N6	C5	C4	N1	182.4	179.8
C4	C5	N1	N2	2.0	359.8
C4	C5	N1	C11	188.9	179.8
C9	C4	C5	C3	179.4	179.4
C5	C4	C9	O9	182.5	180.3
C5	C4	C3	N2	1.4	359.7
C5	C4	C3	C1	177.6	179.8
N6	C5	N1	C4	177.4	180.3
N1	C5	C4	C9	177.4	179.7
N1	C5	C4	C3	358.0	0.3
N2	N1	C5	C11	173.1	180.0
C5	N1	N2	C3	358.9	0.0
C5	N1	C11	C16	106.9	220.0
C5	N1	C11	C12	282.5	39.7
C4	C9	N8	HN8	181.4	179.8
N8	C9	C4	O9	176.9	180.2
C9	C4	C5	N1	177.4	179.7
C5	C4	C9	C3	180.8	180.8
C9	C4	C3	N2	182.1	180.4
C9	C4	C3	C1	358.3	0.6
C3	C4	C5	N1	358.0	0.3
C5	C4	C3	C9	179.2	179.2
C3	C4	C9	O9	1.7	359.4
N1	N2	C3	C4	359.8	0.2
N2	C3	C4	C1	183.8	179.8
C4	C3	C1	C2	276.5	269.8
C4	C3	C1	H11	41.8	149.7
C4	C3	C1	H12	151.3	29.8
O9	C9	N8	HN8	358.2	360.0
N8	C9	O9	C4	183.1	179.8
O9	C9	C4	C3	1.7	359.4
C5	N1	N2	C11	186.9	180.0
C4	C3	N2	N1	359.8	0.2
N2	N1	C11	C16	294.8	40.0
N2	N1	C11	C12	110.5	219.7
N1	N2	C3	C1	182.9	180.0
C5	N1	C11	N2	172.1	180.0
C11	N1	N2	C3	172.1	180.0
C16	C11	N1	C12	184.3	180.3
N1	C11	C16	C15	175.3	180.0
N1	C11	C16	CL16	351.7	360.0
N1	C11	C12	C13	184.8	179.8
N1	C11	C12	CL12	5.5	0.3
C4	C3	N2	C1	176.8	180.2
C3	N2	N1	C11	172.1	180.0
N2	C3	C1	C2	92.5	90.0
N2	C3	C1	H11	217.8	330.0
N2	C3	C1	H12	327.3	210.0
C4	C3	C1	N2	184.0	179.8
C2	C1	C3	H11	234.7	120.0
C2	C1	C3	H12	125.3	240.0
C3	C1	C2	H21	180.0	300.0
C3	C1	C2	H22A	305.3	59.9
C3	C1	C2	H23A	54.7	180.0
H11	C1	C3	H12	250.5	120.0
N1	C11	C16	C12	176.1	179.7
C16	C11	C12	C13	0.5	359.5
C16	C11	C12	CL12	181.2	180.0
C15	C16	C11	CL16	183.6	180.0
C11	C16	C15	C14	0.3	0.0
C11	C16	C15	H15	180.3	179.9
N1	C11	C12	C16	184.3	180.3
C12	C11	C16	C15	359.2	0.3
C12	C11	C16	CL16	175.6	180.3
C13	C12	C11	CL12	179.3	179.5
C11	C12	C13	C14	0.3	0.5
C11	C12	C13	H13	180.4	180.3
C15	C16	C11	C12	359.2	0.3
C11	C16	C15	CL16	176.2	180.0
C14	C15	C16	H15	180.0	180.1
C16	C15	C14	C13	0.5	360.0
C16	C15	C14	CL14	183.1	180.0
CL16	C16	C11	C12	175.6	180.3
C11	C16	CL16	C15	183.6	180.0
CL16	C16	C15	C14	184.1	180.0
CL16	C16	C15	H15	4.1	359.9
C11	C12	C13	CL12	180.6	180.5
C15	C14	C13	C12	359.2	359.8
C14	C13	C12	H13	180.0	180.2
C12	C13	C14	CL14	176.8	179.7
C11	C12	CL12	C13	179.4	179.5
CL12	C12	C13	C14	179.7	180.0
CL12	C12	C13	H13	359.7	359.8
C14	C15	C16	CL16	184.1	180.0
C16	C15	C14	H15	180.0	179.9
C12	C13	C14	C15	359.2	359.8
C15	C14	C13	H13	179.1	180.0
C13	C14	C15	CL14	177.5	180.0
H15	C15	C16	CL16	4.1	359.9
C16	C15	H15	C14	180.0	180.1
H15	C15	C14	C13	180.6	180.1
H15	C15	C14	CL14	3.1	0.1
C14	C13	C12	CL12	179.7	180.0
C12	C13	C14	H13	180.0	179.8
C13	C14	C15	H15	180.6	180.1
C15	C14	C13	CL14	182.4	180.0
H13	C13	C12	CL12	359.7	359.8
C12	C13	H13	C14	180.0	180.2
H13	C13	C14	CL14	356.7	359.9
CL14	C14	C15	H15	3.1	0.1
C15	C14	CL14	C13	177.4	180.0
CL14	C14	C13	H13	356.7	359.9
C3	C1	C2	H11	125.2	239.9
C3	C1	C2	H12	234.7	120.0
H11	C1	C2	H12	109.5	240.0
H21	C2	C1	H22A	234.7	240.0
H21	C2	C1	H23A	125.3	119.9
H22A	C2	C1	H23A	250.6	239.9
C3	C1	H11	C2	235.1	120.1
C3	C1	H11	H12	117.6	240.0
C2	C1	H11	H12	242.4	120.0
H11	C1	C2	H21	54.8	60.0
H11	C1	C2	H22A	180.1	180.0
H11	C1	C2	H23A	289.5	300.1
C3	C1	H12	C2	124.9	240.0
C3	C1	H12	H11	242.5	120.0
C2	C1	H12	H11	117.6	240.0
H12	C1	C2	H21	305.3	180.0
H12	C1	C2	H22A	70.6	300.0
H12	C1	C2	H23A	180.0	60.1
H21	C2	C1	H11	54.8	60.0
H21	C2	C1	H12	305.3	180.0
C1	C2	H21	H22A	125.3	120.0
C1	C2	H21	H23A	234.7	240.0
H22A	C2	H21	H23A	109.4	120.0
H22A	C2	C1	H11	180.1	180.0
H22A	C2	C1	H12	70.6	300.0
C1	C2	H22A	H21	235.1	240.0
C1	C2	H22A	H23A	117.5	120.1
H21	C2	H22A	H23A	242.4	240.0
H23A	C2	C1	H11	289.5	300.1
H23A	C2	C1	H12	180.0	60.1
C1	C2	H23A	H21	124.9	120.0
C1	C2	H23A	H22A	242.5	240.0
H21	C2	H23A	H22A	117.6	120.0
C7	C20	C21	H201	125.3	120.0
C7	C20	C21	H202	234.7	239.9
H201	C20	C21	H202	109.4	120.0
C22	C21	C20	C26	181.2	179.7
C20	C21	C22	C23	176.9	179.8
C20	C21	C22	H22	356.8	0.2
C20	C21	C26	C25	183.2	180.0
C20	C21	C26	H26	3.2	0.0
C7	C20	H201	C21	232.2	240.0
C7	C20	H201	H202	116.1	120.0
C21	C20	H201	H202	243.9	240.0
H201	C20	C21	C22	139.1	149.7
H201	C20	C21	C26	317.9	330.0
C7	C20	H202	C21	127.8	120.0
C7	C20	H202	H201	243.9	240.0
C21	C20	H202	H201	116.1	120.0
H202	C20	C21	C22	29.7	29.8
H202	C20	C21	C26	208.5	210.0
C22	C21	C20	H201	139.1	149.7
C22	C21	C20	H202	29.7	29.8
C20	C21	C22	C26	178.8	180.3
C22	C21	C26	C25	2.0	0.2
C22	C21	C26	H26	182.0	180.3
C23	C22	C21	H22	180.0	179.5
C21	C22	C23	C24	0.1	0.5
C21	C22	C23	O23	182.1	180.3
C26	C21	C20	H201	317.9	330.0
C26	C21	C20	H202	208.5	210.0
C20	C21	C26	C22	181.2	179.7
C26	C21	C22	C23	358.1	359.5
C26	C21	C22	H22	178.0	180.0
C24	C25	C26	C21	359.8	0.0
C21	C26	C25	H25	179.8	180.0
C25	C26	C21	H26	180.0	180.0
C23	C22	C21	C26	358.1	359.5
C21	C22	C23	H22	180.0	180.5
C24	C23	C22	O23	178.0	180.2
C22	C23	C24	C25	1.6	359.8
C22	C23	C24	O24	184.5	179.8
C22	C23	O23	H23	180.0	270.3
H22	C22	C21	C26	178.0	180.0
C21	C22	H22	C23	180.0	179.5
H22	C22	C23	C24	180.2	180.0
H22	C22	C23	O23	2.1	359.8
C24	C23	C22	H22	180.2	180.0
C22	C23	C24	O23	181.9	179.8
C24	C23	O23	H23	2.0	90.1
C25	C24	C23	O24	177.1	180.0
C23	C24	C25	C26	358.4	360.0
C23	C24	C25	H25	178.4	180.0
C23	C24	O24	H24	180.0	270.0
O23	C23	C22	H22	2.1	359.8
C22	C23	O23	C24	178.1	180.2
O23	C23	C24	C25	179.7	180.0
O23	C23	C24	O24	2.6	360.0
C21	C26	C25	C24	359.8	0.0
C25	C24	C23	O23	179.7	180.0
C23	C24	C25	O24	182.9	180.0
C25	C24	O24	H24	2.9	90.0
C26	C25	C24	H25	180.1	180.0
C24	C25	C26	H26	179.8	180.0
O24	C24	C23	O23	2.6	360.0
C23	C24	O24	C25	177.1	180.0
O24	C24	C25	C26	175.5	180.0
O24	C24	C25	H25	355.4	0.0
C21	C26	C25	H26	180.0	180.0
C26	C25	C24	O24	175.5	180.0
C24	C25	C26	H25	179.9	180.0
H25	C25	C24	O24	355.4	0.0
C24	C25	H25	C26	180.1	180.0
H25	C25	C26	H26	359.8	360.0
C21	C26	H26	C25	180.0	180.0
H26	C26	C25	H25	359.8	360.0