PDB Chemical Component D02
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for D02
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAM |
CAA |
1.396 |
1.451 |
| CAA |
HAA |
1.100 |
1.091 |
| CAA |
HAAA |
1.101 |
1.090 |
| CAA |
HAAB |
1.100 |
1.090 |
| NAB |
SAW |
1.656 |
1.656 |
| NAB |
HNAB |
1.000 |
0.969 |
| NAB |
HNAA |
1.000 |
0.970 |
| OAC |
CAN |
1.232 |
1.214 |
| SAW |
OAD |
1.481 |
1.420 |
| OAE |
SAW |
1.455 |
1.421 |
| FAF |
CAP |
1.341 |
1.351 |
| FAG |
CAQ |
1.285 |
1.351 |
| CAR |
FAH |
1.333 |
1.351 |
| CAS |
FAI |
1.296 |
1.351 |
| CAO |
CAJ |
1.398 |
1.368 |
| CAJ |
NAV |
1.324 |
1.350 |
| CAJ |
HAJ |
1.080 |
1.080 |
| CAO |
NAK |
1.384 |
1.344 |
| NAK |
NAL |
1.356 |
1.288 |
| NAV |
NAL |
1.388 |
1.402 |
| OAM |
CAN |
1.392 |
1.348 |
| CAN |
CAO |
1.517 |
1.474 |
| CAT |
CAP |
1.370 |
1.389 |
| CAP |
CAR |
1.359 |
1.386 |
| CAT |
CAQ |
1.367 |
1.390 |
| CAQ |
CAS |
1.340 |
1.385 |
| CAR |
CAU |
1.404 |
1.384 |
| CAS |
CAU |
1.392 |
1.384 |
| NAV |
CAT |
1.414 |
1.404 |
| CAU |
SAW |
1.806 |
1.762 |
Bond Angles for D02
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAM |
CAA |
HAA |
109.5 |
109.5 |
| OAM |
CAA |
HAAA |
109.4 |
109.5 |
| OAM |
CAA |
HAAB |
109.5 |
109.5 |
| HAA |
CAA |
HAAA |
109.5 |
109.5 |
| HAA |
CAA |
HAAB |
109.5 |
109.4 |
| HAAA |
CAA |
HAAB |
109.5 |
109.5 |
| SAW |
NAB |
HNAB |
109.5 |
120.0 |
| SAW |
NAB |
HNAA |
109.5 |
120.0 |
| NAB |
SAW |
OAD |
113.3 |
106.4 |
| NAB |
SAW |
OAE |
111.7 |
106.4 |
| NAB |
SAW |
CAU |
107.5 |
107.3 |
| HNAB |
NAB |
HNAA |
109.5 |
120.0 |
| OAC |
CAN |
OAM |
119.2 |
120.0 |
| OAC |
CAN |
CAO |
117.3 |
120.1 |
| OAE |
SAW |
CAU |
105.8 |
106.4 |
| FAF |
CAP |
CAR |
121.9 |
120.0 |
| FAG |
CAQ |
CAS |
121.3 |
120.1 |
| CAO |
CAJ |
NAV |
106.7 |
106.7 |
| CAO |
CAJ |
HAJ |
126.6 |
126.6 |
| NAV |
CAJ |
HAJ |
126.6 |
126.7 |
| CAJ |
NAV |
NAL |
110.0 |
106.9 |
| CAJ |
NAV |
CAT |
121.7 |
126.6 |
| OAM |
CAN |
CAO |
116.8 |
120.0 |
| CAP |
CAR |
CAU |
122.1 |
120.0 |
| CAQ |
CAS |
CAU |
121.4 |
120.1 |
| CAR |
CAU |
CAS |
116.5 |
120.2 |
| CAR |
CAU |
SAW |
121.4 |
119.9 |
| CAS |
CAU |
SAW |
122.1 |
119.9 |
Torsion Angles for D02
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAA |
CAA |
OAM |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
OAM |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
OAM |
HAAB |
240.0 |
240.0 |
| OAM |
CAA |
HAA |
HAAA |
120.0 |
120.1 |
| OAM |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
120.0 |
| OAM |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
| OAM |
CAA |
HAAA |
HAAB |
120.0 |
120.0 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
240.1 |
| OAM |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| OAM |
CAA |
HAAB |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
120.0 |
| HNAB |
NAB |
SAW |
HNAA |
240.0 |
180.1 |
| OAE |
SAW |
NAB |
CAU |
115.7 |
246.5 |
| CAR |
CAU |
SAW |
NAB |
303.2 |
90.0 |
| CAS |
CAU |
SAW |
NAB |
124.9 |
270.0 |
| SAW |
NAB |
HNAB |
HNAA |
120.0 |
179.9 |
| HNAB |
NAB |
SAW |
OAD |
180.0 |
293.6 |
| HNAB |
NAB |
SAW |
OAE |
48.5 |
66.5 |
| HNAB |
NAB |
SAW |
CAU |
292.9 |
180.0 |
| SAW |
NAB |
HNAA |
HNAB |
240.0 |
180.1 |
| HNAA |
NAB |
SAW |
OAD |
300.0 |
113.5 |
| HNAA |
NAB |
SAW |
OAE |
168.5 |
246.4 |
| HNAA |
NAB |
SAW |
CAU |
52.9 |
360.0 |
| OAM |
CAN |
OAC |
CAO |
150.4 |
180.0 |
| OAD |
SAW |
NAB |
HNAB |
180.0 |
293.6 |
| OAD |
SAW |
NAB |
HNAA |
300.0 |
113.5 |
| NAB |
SAW |
OAD |
OAE |
230.1 |
122.9 |
| NAB |
SAW |
OAD |
CAU |
115.7 |
245.9 |
| OAE |
SAW |
NAB |
HNAB |
48.5 |
66.5 |
| OAE |
SAW |
NAB |
HNAA |
168.5 |
246.4 |
| NAB |
SAW |
OAE |
OAD |
130.7 |
237.1 |
| NAB |
SAW |
OAE |
CAU |
243.3 |
114.1 |
| CAR |
CAU |
SAW |
OAE |
183.7 |
203.5 |
| CAS |
CAU |
SAW |
OAE |
5.4 |
23.5 |
| FAF |
CAP |
CAR |
CAU |
178.4 |
180.0 |
| FAG |
CAQ |
CAS |
CAU |
179.3 |
180.0 |
| FAF |
CAP |
CAR |
FAH |
358.2 |
360.0 |
| FAG |
CAQ |
CAS |
FAI |
358.8 |
360.0 |
| OAC |
CAN |
CAO |
CAJ |
202.7 |
359.9 |
| NAV |
CAJ |
CAO |
HAJ |
180.0 |
180.2 |
| CAO |
CAJ |
NAV |
NAL |
2.3 |
359.7 |
| CAO |
CAJ |
NAV |
CAT |
178.5 |
179.8 |
| CAO |
CAJ |
NAV |
HAJ |
180.0 |
179.8 |
| CAO |
CAJ |
HAJ |
NAV |
180.0 |
180.3 |
| HAJ |
CAJ |
NAV |
NAL |
182.3 |
180.0 |
| HAJ |
CAJ |
NAV |
CAT |
358.5 |
0.0 |
| OAC |
CAN |
CAO |
NAK |
23.3 |
180.0 |
| NAK |
CAO |
CAJ |
NAV |
359.3 |
360.0 |
| NAK |
CAO |
CAJ |
HAJ |
179.2 |
179.8 |
| CAJ |
NAV |
NAL |
NAK |
357.0 |
0.4 |
| NAL |
NAV |
CAJ |
HAJ |
182.3 |
180.0 |
| CAJ |
NAV |
NAL |
CAT |
175.9 |
180.1 |
| CAN |
OAM |
CAA |
HAA |
180.0 |
60.0 |
| CAN |
OAM |
CAA |
HAAA |
300.0 |
180.0 |
| CAN |
OAM |
CAA |
HAAB |
60.0 |
300.0 |
| OAC |
CAN |
OAM |
CAO |
209.4 |
180.0 |
| OAC |
CAN |
CAO |
OAM |
151.2 |
180.0 |
| CAN |
CAO |
CAJ |
NAV |
179.8 |
180.0 |
| CAN |
CAO |
CAJ |
HAJ |
359.8 |
359.8 |
| CAJ |
NAV |
CAT |
CAP |
130.9 |
180.0 |
| CAT |
CAP |
CAR |
CAU |
0.2 |
0.3 |
| CAP |
CAR |
CAU |
CAS |
359.6 |
360.0 |
| CAP |
CAR |
CAU |
SAW |
181.2 |
180.0 |
| CAJ |
NAV |
CAT |
CAQ |
310.4 |
359.9 |
| CAT |
CAQ |
CAS |
CAU |
0.3 |
0.3 |
| CAR |
CAU |
CAS |
CAQ |
0.2 |
359.7 |
| CAQ |
CAS |
CAU |
SAW |
178.5 |
179.7 |
| NAB |
SAW |
CAU |
CAR |
303.2 |
90.0 |
| OAE |
SAW |
CAU |
CAR |
183.7 |
203.5 |
| CAQ |
CAS |
CAU |
CAR |
0.2 |
359.7 |
| CAS |
CAU |
CAR |
SAW |
178.4 |
180.0 |
| NAB |
SAW |
CAU |
CAS |
124.9 |
270.0 |
| OAE |
SAW |
CAU |
CAS |
5.4 |
23.5 |
| CAR |
CAU |
CAS |
SAW |
181.6 |
180.0 |
| CAT |
NAV |
CAJ |
HAJ |
358.5 |
0.0 |
| CAJ |
NAV |
CAT |
NAL |
184.5 |
179.9 |
| CAU |
SAW |
NAB |
HNAB |
292.9 |
180.0 |
| CAU |
SAW |
NAB |
HNAA |
52.9 |
360.0 |
| NAB |
SAW |
CAU |
OAD |
240.2 |
113.6 |
| NAB |
SAW |
CAU |
OAE |
119.5 |
246.5 |
| CAR |
CAU |
SAW |
CAS |
178.3 |
180.0 |