PDB Chemical Component D00

Ideal Model

Chemical Description

Name 2'-deoxy-N-ethylcytidine 5'-(dihydrogen phosphate)
Formula C11 H18 N3 O7 P
Formal charge 0
Molecular weight 335.250 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 40
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-ethylcytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[4-(ethylamino)-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCNC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) CCNC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) CCNC1=NC(=O)N(C=C1)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H18N3O7P/c1-2-12-9-3-4-14(11(16)13-9)10-5-7(15)8(21-10)6-20-22(17,18)19/h3-4,7-8,10,15H,2,5-6H2,1H3,(H,12,13,16)(H2,17,18,19)/t7-,8+,10+/m0/s1
InChIKey descriptor CLGIJIDGLSCEMM-QXFUBDJGSA-N

Status Information

Last modified 2014-06-20
Created 2014-06-06
Release status REL
Model PDB code 1N4B
Processing site PDBJ