Atom Nomenclature for CZT

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CZT

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C21 C6
C22 C7
C01 C8
C02 C9
C03 C10
N01 N1
C04 C11
C05 C12
O01 O1
N02 N2
C06 C13
C07 C14
C08 C15
C09 C16
O02 O2
C11 C17
C12 C18
C14 C19
O03 O3
C16 C20
C18 C21
O04 O4
C19 C22
O05 O5
H11 H1
H17 H2
H16 H3
H23 H4
H34 H5
H32 H6
H33 H7
H31 H8
H29 H9
H30 H10
H03 H11
H02 H12
H01 H13
H04 H14
H06 H15
H05 H16
H28 H18
H07 H19
H08 H20
H09 H21
H10 H22
H13 H23
H12 H24
H14 H25
H15 H26
H18 H27
H19 H28
H20 H29
H21 H30
H22 H31
H24 H32
H27 H33
H25 H34
H26 H35