Atom Nomenclature for CZQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CZQ

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C21 C6
C01 C7
N01 N1
O01 O1
C02 C8
N02 N2
O02 O2
C03 C9
O03 O3
C04 C10
O04 O4
C05 C11
O05 O5
C06 C12
C07 C13
C08 C14
C09 C15
C11 C16
C12 C17
C14 C18
C16 C19
C18 C20
C19 C21
F01 F1
F02 F2
H22 H1
H21 H2
H09 H3
H08 H4
H15 H5
H16 H6
H17 H7
H27 H8
H28 H9
H26 H10
H25 H11
H23 H12
H24 H13
H01 H14
H02 H15
H10 H16
H12 H17
H03 H18
H14 H19
H04 H20
H19 H21
H05 H22
H07 H23
H06 H24
H13 H25
H11 H26
H18 H27
H20 H28