Atom Nomenclature for CZK

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CZK

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C21 C6
C22 C7
C01 C8
O01 O1
C02 C9
C03 C10
O02 O2
C04 C11
C05 C12
C06 C13
C07 C14
C08 C15
C09 C16
C11 C17
C12 C18
N01 N1
N02 N2
C14 C19
O03 O3
C16 C20
N03 N3
C18 C21
O04 O4
C19 C22
H18 H1
H22 H2
H23 H3
H29 H4
H28 H5
H30 H6
H31 H7
H01 H8
H02 H9
H03 H10
H04 H11
H05 H12
H06 H13
H08 H14
H07 H15
H10 H16
H09 H17
H12 H18
H11 H19
H13 H20
H14 H21
H15 H22
H16 H23
H17 H24
H19 H25
H20 H26
H21 H27
H24 H29
H25 H30
H26 H31
H27 H32