Atom Nomenclature for CZ8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CZ8

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CA CA
CB CB
CAA CAA
OAC OAC
OAD OAD
OAE OAE
OAF OAF
OAG OAG
OAH OAH
CAI CAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
CAP CAP
CAQ CAQ
CAR CAR
NAS NAS
CAV CAV
CAW CAW
CAX CAX
BAY BAY
CAY CAY
CAZ CAZ
NBC NBC
NBD NBD
HN HN
HA HA
HB HB
HBA HBA
HAA HAA
HAAA HAAA
HAAB HAAB
HOAF HOAF
HOAG HOAG
HOAH HOAH
HAI HAI
HAJ HAJ
HAK HAK
HAL HAL
HAM HAM
HAMA HAMA
HAN HAN
HANA HANA
HAP HAP
HAPA HAPA
HAQ HAQ
HAQA HAQA
HAR HAR
HARA HARA
HNAS HNAS