PDB Chemical Component CYX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CYX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.553	1.461
C1	O3	1.236	1.213
C1	H11	1.103	1.080
C2	C4	1.351	1.334
C2	C5	1.542	1.508
C4	H41	1.104	1.080
C4	H42	1.102	1.081
C5	C6	1.560	1.528
C5	H51	1.115	1.090
C5	H52	1.115	1.089
C6	P7	1.748	1.822
C6	H61	1.115	1.090
C6	H62	1.115	1.091
P7	O8	1.605	1.611
P7	O9	1.606	1.609
P7	O10	1.608	1.479
O8	H81	0.950	0.967
O9	H91	0.950	0.967

Bond Angles for CYX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O3	122.3	120.0
C2	C1	H11	130.5	120.0
C1	C2	C4	122.4	120.0
C1	C2	C5	118.7	120.0
O3	C1	H11	107.2	120.0
C4	C2	C5	118.9	120.0
C2	C4	H41	118.9	120.0
C2	C4	H42	122.4	120.1
C2	C5	C6	113.1	109.5
C2	C5	H51	110.9	109.4
C2	C5	H52	110.9	109.5
H41	C4	H42	118.7	120.0
C6	C5	H51	110.8	109.5
C6	C5	H52	110.9	109.5
C5	C6	P7	116.0	109.5
C5	C6	H61	109.9	109.5
C5	C6	H62	109.8	109.5
H51	C5	H52	99.5	109.5
P7	C6	H61	109.9	109.5
P7	C6	H62	109.9	109.5
C6	P7	O8	109.0	109.5
C6	P7	O9	109.0	109.5
C6	P7	O10	109.9	109.5
H61	C6	H62	100.3	109.4
O8	P7	O9	109.8	109.4
O8	P7	O10	109.8	109.5
P7	O8	H81	109.1	106.8
O9	P7	O10	109.4	109.5
P7	O9	H91	109.0	106.8

Torsion Angles for CYX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	C1	C2	H11	180.0	180.1
C4	C2	C1	C5	179.7	180.0
C1	C2	C4	H41	0.3	0.1
C1	C2	C4	H42	180.0	180.1
C1	C2	C5	C6	311.4	270.0
C1	C2	C5	H51	76.6	150.0
C1	C2	C5	H52	186.1	30.0
C2	C1	O3	H11	180.0	179.9
O3	C1	C2	C4	248.5	180.0
O3	C1	C2	C5	68.8	0.1
C2	C1	H11	O3	180.0	180.1
H11	C1	C2	C4	68.5	359.9
H11	C1	C2	C5	248.8	180.0
C4	C2	C1	O3	248.5	180.0
C4	C2	C1	H11	68.5	359.9
C1	C2	C4	C5	180.3	180.0
C4	C2	C5	C6	131.7	90.0
C4	C2	C5	H51	256.9	330.0
C4	C2	C5	H52	6.4	210.1
H41	C4	C2	H42	180.2	180.0
C5	C2	C1	O3	68.8	0.1
C5	C2	C1	H11	248.8	180.0
C1	C2	C5	C4	179.7	180.0
C5	C2	C4	H41	180.0	180.0
C5	C2	C4	H42	359.8	0.0
C6	C5	C2	H51	234.8	120.0
C6	C5	C2	H52	125.3	240.0
C2	C5	C6	P7	203.6	180.0
C2	C5	C6	H61	328.9	60.0
C2	C5	C6	H62	78.3	300.0
H51	C5	C2	H52	250.5	120.0
H41	C4	C2	C5	180.0	180.0
C2	C4	H41	H42	179.8	180.0
H42	C4	C2	C5	359.8	0.0
C2	C4	H42	H41	180.2	180.0
C2	C5	C6	H51	125.2	240.0
C2	C5	C6	H52	234.8	120.0
H51	C5	C6	H52	109.5	240.0
P7	C6	C5	H61	234.7	120.0
P7	C6	C5	H62	125.3	240.0
C5	C6	P7	O8	216.3	180.0
C5	C6	P7	O9	96.5	60.1
C5	C6	P7	O10	336.7	300.0
H61	C6	C5	H62	250.6	120.0
C2	C5	H51	C6	233.5	120.0
C2	C5	H51	H52	116.7	240.1
C6	C5	H51	H52	243.2	120.0
H51	C5	C6	P7	78.4	300.0
H51	C5	C6	H61	203.7	179.9
H51	C5	C6	H62	313.0	60.0
C2	C5	H52	C6	126.5	240.0
C2	C5	H52	H51	243.2	119.9
C6	C5	H52	H51	116.7	240.0
H52	C5	C6	P7	328.9	60.0
H52	C5	C6	H61	94.1	300.0
H52	C5	C6	H62	203.5	180.0
P7	C6	C5	H51	78.4	300.0
P7	C6	C5	H52	328.9	60.0
C5	C6	P7	H61	125.3	239.9
C5	C6	P7	H62	234.7	120.0
H61	C6	P7	H62	109.4	240.1
O8	P7	C6	O9	119.8	119.9
O8	P7	C6	O10	239.7	240.0
C6	P7	O8	H81	180.0	180.0
O9	P7	C6	O10	119.8	120.1
C6	P7	O9	H91	179.9	60.0
H61	C6	C5	H51	203.7	179.9
H61	C6	C5	H52	94.1	300.0
C5	C6	H61	P7	231.3	120.0
C5	C6	H61	H62	115.6	240.0
P7	C6	H61	H62	244.3	119.9
H61	C6	P7	O8	91.0	300.1
H61	C6	P7	O9	331.2	180.1
H61	C6	P7	O10	211.4	60.0
H62	C6	C5	H51	313.0	60.0
H62	C6	C5	H52	203.5	180.0
C5	C6	H62	P7	128.7	240.0
C5	C6	H62	H61	244.4	120.0
P7	C6	H62	H61	115.6	240.1
H62	C6	P7	O8	341.6	59.9
H62	C6	P7	O9	221.8	300.0
H62	C6	P7	O10	102.0	179.9
O8	P7	C6	H61	91.0	300.1
O8	P7	C6	H62	341.6	59.9
C6	P7	O8	O9	240.6	240.0
C6	P7	O8	O10	120.4	120.0
O9	P7	O8	O10	239.7	240.0
O8	P7	O9	H91	60.6	300.0
O9	P7	C6	H61	331.2	180.1
O9	P7	C6	H62	221.8	300.0
C6	P7	O9	O8	119.4	120.0
C6	P7	O9	O10	239.9	239.9
O8	P7	O9	O10	120.5	120.0
O9	P7	O8	H81	299.4	300.0
O10	P7	C6	H61	211.4	60.0
O10	P7	C6	H62	102.0	179.9
C6	P7	O10	O8	240.1	240.0
C6	P7	O10	O9	119.6	120.1
O8	P7	O10	O9	239.5	240.0
O10	P7	O8	H81	59.6	60.0
O10	P7	O9	H91	300.1	180.0
H81	O8	P7	O9	299.4	300.0
H81	O8	P7	O10	59.6	60.0
H91	O9	P7	O10	300.1	180.0