PDB Chemical Component CYH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CYH
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.370 |
1.207 |
C1 |
C2 |
1.538 |
1.512 |
C1 |
C6 |
1.545 |
1.513 |
C2 |
C3 |
1.544 |
1.532 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.115 |
1.089 |
C3 |
C4 |
1.531 |
1.528 |
C3 |
H31 |
1.115 |
1.090 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
C5 |
1.529 |
1.529 |
C4 |
H41 |
1.115 |
1.090 |
C4 |
H42 |
1.115 |
1.090 |
C5 |
C6 |
1.545 |
1.527 |
C5 |
H51 |
1.115 |
1.089 |
C5 |
H52 |
1.115 |
1.090 |
C6 |
H61 |
1.115 |
1.090 |
C6 |
H62 |
1.115 |
1.089 |
Bond Angles for CYH
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
115.5 |
120.8 |
O1 |
C1 |
C6 |
118.4 |
120.9 |
C2 |
C1 |
C6 |
118.5 |
118.3 |
C1 |
C2 |
C3 |
110.3 |
108.5 |
C1 |
C2 |
H21 |
111.9 |
109.6 |
C1 |
C2 |
H22 |
111.9 |
109.6 |
C1 |
C6 |
C5 |
105.9 |
108.8 |
C1 |
C6 |
H61 |
113.5 |
109.7 |
C1 |
C6 |
H62 |
113.6 |
109.3 |
C3 |
C2 |
H21 |
111.9 |
109.6 |
C3 |
C2 |
H22 |
111.9 |
109.7 |
C2 |
C3 |
C4 |
111.4 |
109.4 |
C2 |
C3 |
H31 |
111.5 |
109.4 |
C2 |
C3 |
H32 |
111.5 |
109.4 |
H21 |
C2 |
H22 |
98.5 |
109.8 |
C4 |
C3 |
H31 |
111.5 |
109.5 |
C4 |
C3 |
H32 |
111.5 |
109.5 |
C3 |
C4 |
C5 |
111.4 |
109.8 |
C3 |
C4 |
H41 |
111.5 |
109.4 |
C3 |
C4 |
H42 |
111.5 |
109.4 |
H31 |
C3 |
H32 |
98.9 |
109.5 |
C5 |
C4 |
H41 |
111.5 |
109.4 |
C5 |
C4 |
H42 |
111.5 |
109.4 |
C4 |
C5 |
C6 |
108.5 |
109.5 |
C4 |
C5 |
H51 |
112.6 |
109.5 |
C4 |
C5 |
H52 |
112.5 |
109.5 |
H41 |
C4 |
H42 |
98.9 |
109.3 |
C6 |
C5 |
H51 |
112.6 |
109.5 |
C6 |
C5 |
H52 |
112.5 |
109.3 |
C5 |
C6 |
H61 |
113.5 |
109.6 |
C5 |
C6 |
H62 |
113.5 |
109.7 |
H51 |
C5 |
H52 |
97.9 |
109.5 |
H61 |
C6 |
H62 |
96.9 |
109.7 |
Torsion Angles for CYH
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
C6 |
149.3 |
180.3 |
O1 |
C1 |
C2 |
C3 |
164.0 |
128.7 |
O1 |
C1 |
C2 |
H21 |
38.8 |
248.3 |
O1 |
C1 |
C2 |
H22 |
289.3 |
8.9 |
O1 |
C1 |
C6 |
C5 |
202.1 |
231.3 |
O1 |
C1 |
C6 |
H61 |
76.8 |
351.2 |
O1 |
C1 |
C6 |
H62 |
327.3 |
111.6 |
O1 |
C1 |
C2 |
C6 |
210.8 |
179.7 |
C2 |
C1 |
C6 |
C5 |
53.7 |
51.0 |
C2 |
C1 |
C6 |
H61 |
288.5 |
170.9 |
C2 |
C1 |
C6 |
H62 |
179.0 |
291.3 |
C3 |
C2 |
C1 |
H21 |
125.2 |
240.4 |
C3 |
C2 |
C1 |
H22 |
234.7 |
119.8 |
C1 |
C2 |
C3 |
C4 |
45.7 |
54.6 |
C1 |
C2 |
C3 |
H31 |
280.4 |
174.6 |
C1 |
C2 |
C3 |
H32 |
171.0 |
294.6 |
H21 |
C2 |
C1 |
H22 |
109.5 |
239.4 |
O1 |
C1 |
C6 |
C2 |
148.4 |
180.3 |
C6 |
C1 |
C2 |
C3 |
313.3 |
309.0 |
C6 |
C1 |
C2 |
H21 |
188.0 |
68.6 |
C6 |
C1 |
C2 |
H22 |
78.5 |
189.2 |
C4 |
C5 |
C6 |
C1 |
299.8 |
305.6 |
C1 |
C6 |
C5 |
H51 |
65.0 |
185.6 |
C1 |
C6 |
C5 |
H52 |
174.5 |
65.6 |
C5 |
C6 |
C1 |
H61 |
125.2 |
240.1 |
C5 |
C6 |
C1 |
H62 |
234.8 |
119.7 |
H61 |
C6 |
C1 |
H62 |
109.5 |
239.6 |
C3 |
C2 |
C1 |
C6 |
313.3 |
309.0 |
C1 |
C2 |
C3 |
H21 |
234.7 |
119.6 |
C1 |
C2 |
C3 |
H22 |
125.3 |
240.3 |
H21 |
C2 |
C3 |
H22 |
250.5 |
120.6 |
C4 |
C3 |
C2 |
H31 |
125.3 |
239.9 |
C4 |
C3 |
C2 |
H32 |
234.7 |
120.0 |
C2 |
C3 |
C4 |
C5 |
302.0 |
296.4 |
C2 |
C3 |
C4 |
H41 |
176.7 |
56.5 |
C2 |
C3 |
C4 |
H42 |
67.3 |
176.3 |
H31 |
C3 |
C2 |
H32 |
109.4 |
240.0 |
H21 |
C2 |
C1 |
C6 |
188.0 |
68.6 |
C1 |
C2 |
H21 |
C3 |
124.4 |
241.0 |
C1 |
C2 |
H21 |
H22 |
242.2 |
120.5 |
C3 |
C2 |
H21 |
H22 |
117.8 |
239.5 |
H21 |
C2 |
C3 |
C4 |
170.9 |
294.9 |
H21 |
C2 |
C3 |
H31 |
45.7 |
55.0 |
H21 |
C2 |
C3 |
H32 |
296.2 |
175.0 |
H22 |
C2 |
C1 |
C6 |
78.5 |
189.2 |
C1 |
C2 |
H22 |
C3 |
235.6 |
119.1 |
C1 |
C2 |
H22 |
H21 |
117.8 |
239.5 |
C3 |
C2 |
H22 |
H21 |
242.2 |
120.5 |
H22 |
C2 |
C3 |
C4 |
280.4 |
174.3 |
H22 |
C2 |
C3 |
H31 |
155.1 |
294.4 |
H22 |
C2 |
C3 |
H32 |
45.7 |
54.4 |
C4 |
C3 |
C2 |
H21 |
170.9 |
294.9 |
C4 |
C3 |
C2 |
H22 |
280.4 |
174.3 |
C2 |
C3 |
C4 |
H31 |
234.7 |
120.0 |
C2 |
C3 |
C4 |
H32 |
125.3 |
240.1 |
H31 |
C3 |
C4 |
H32 |
250.5 |
120.1 |
C5 |
C4 |
C3 |
H41 |
125.3 |
239.9 |
C5 |
C4 |
C3 |
H42 |
234.7 |
120.2 |
C3 |
C4 |
C5 |
C6 |
66.4 |
63.4 |
C3 |
C4 |
C5 |
H51 |
301.1 |
183.5 |
C3 |
C4 |
C5 |
H52 |
191.6 |
303.6 |
H41 |
C4 |
C3 |
H42 |
109.4 |
240.3 |
H31 |
C3 |
C2 |
H21 |
45.7 |
55.0 |
H31 |
C3 |
C2 |
H22 |
155.1 |
294.4 |
C2 |
C3 |
H31 |
C4 |
125.2 |
240.0 |
C2 |
C3 |
H31 |
H32 |
242.6 |
119.9 |
C4 |
C3 |
H31 |
H32 |
117.4 |
239.9 |
H31 |
C3 |
C4 |
C5 |
67.2 |
176.4 |
H31 |
C3 |
C4 |
H41 |
302.0 |
296.5 |
H31 |
C3 |
C4 |
H42 |
192.5 |
56.3 |
H32 |
C3 |
C2 |
H21 |
296.2 |
175.0 |
H32 |
C3 |
C2 |
H22 |
45.7 |
54.4 |
C2 |
C3 |
H32 |
C4 |
234.7 |
119.9 |
C2 |
C3 |
H32 |
H31 |
117.4 |
240.0 |
C4 |
C3 |
H32 |
H31 |
242.6 |
120.1 |
H32 |
C3 |
C4 |
C5 |
176.7 |
56.4 |
H32 |
C3 |
C4 |
H41 |
51.4 |
176.4 |
H32 |
C3 |
C4 |
H42 |
302.0 |
296.2 |
C1 |
C6 |
C5 |
C4 |
299.8 |
305.6 |
C5 |
C4 |
C3 |
H31 |
67.2 |
176.4 |
C5 |
C4 |
C3 |
H32 |
176.7 |
56.4 |
C3 |
C4 |
C5 |
H41 |
234.7 |
120.1 |
C3 |
C4 |
C5 |
H42 |
125.3 |
239.8 |
H41 |
C4 |
C5 |
H42 |
250.5 |
119.7 |
C6 |
C5 |
C4 |
H51 |
125.3 |
239.9 |
C6 |
C5 |
C4 |
H52 |
234.8 |
119.8 |
C4 |
C5 |
C6 |
H61 |
65.0 |
185.7 |
C4 |
C5 |
C6 |
H62 |
174.5 |
65.1 |
H51 |
C5 |
C4 |
H52 |
109.5 |
239.9 |
H41 |
C4 |
C3 |
H31 |
302.0 |
296.5 |
H41 |
C4 |
C3 |
H32 |
51.4 |
176.4 |
C3 |
C4 |
H41 |
C5 |
125.2 |
239.6 |
C3 |
C4 |
H41 |
H42 |
242.6 |
119.8 |
C5 |
C4 |
H41 |
H42 |
117.4 |
240.2 |
H41 |
C4 |
C5 |
C6 |
191.6 |
303.3 |
H41 |
C4 |
C5 |
H51 |
66.4 |
63.4 |
H41 |
C4 |
C5 |
H52 |
316.9 |
183.5 |
H42 |
C4 |
C3 |
H31 |
192.5 |
56.3 |
H42 |
C4 |
C3 |
H32 |
302.0 |
296.2 |
C3 |
C4 |
H42 |
C5 |
234.8 |
120.4 |
C3 |
C4 |
H42 |
H41 |
117.4 |
240.2 |
C5 |
C4 |
H42 |
H41 |
242.6 |
119.8 |
H42 |
C4 |
C5 |
C6 |
301.1 |
183.6 |
H42 |
C4 |
C5 |
H51 |
175.8 |
303.7 |
H42 |
C4 |
C5 |
H52 |
66.3 |
63.8 |
C1 |
C6 |
C5 |
H61 |
234.8 |
120.0 |
C1 |
C6 |
C5 |
H62 |
125.3 |
240.5 |
C6 |
C5 |
C4 |
H41 |
191.6 |
303.3 |
C6 |
C5 |
C4 |
H42 |
301.1 |
183.6 |
C4 |
C5 |
C6 |
H51 |
234.7 |
120.1 |
C4 |
C5 |
C6 |
H52 |
125.2 |
240.1 |
H51 |
C5 |
C6 |
H52 |
250.5 |
120.0 |
H61 |
C6 |
C5 |
H62 |
250.5 |
120.5 |
H51 |
C5 |
C4 |
H41 |
66.4 |
63.4 |
H51 |
C5 |
C4 |
H42 |
175.8 |
303.7 |
C4 |
C5 |
H51 |
C6 |
123.1 |
239.9 |
C4 |
C5 |
H51 |
H52 |
241.5 |
120.1 |
C6 |
C5 |
H51 |
H52 |
118.5 |
240.1 |
H51 |
C5 |
C6 |
H61 |
190.3 |
65.6 |
H51 |
C5 |
C6 |
H62 |
299.8 |
305.0 |
H52 |
C5 |
C4 |
H41 |
316.9 |
183.5 |
H52 |
C5 |
C4 |
H42 |
66.3 |
63.8 |
C4 |
C5 |
H52 |
C6 |
237.0 |
119.9 |
C4 |
C5 |
H52 |
H51 |
118.5 |
239.9 |
C6 |
C5 |
H52 |
H51 |
241.5 |
120.0 |
H52 |
C5 |
C6 |
H61 |
299.8 |
305.6 |
H52 |
C5 |
C6 |
H62 |
49.3 |
185.0 |
C1 |
C6 |
H61 |
C5 |
121.0 |
240.6 |
C1 |
C6 |
H61 |
H62 |
240.5 |
120.1 |
H61 |
C6 |
C5 |
H51 |
190.3 |
65.6 |
H61 |
C6 |
C5 |
H52 |
299.8 |
305.6 |
C5 |
C6 |
H61 |
H62 |
119.4 |
239.5 |
C1 |
C6 |
H62 |
C5 |
238.9 |
119.2 |
C1 |
C6 |
H62 |
H61 |
119.5 |
239.7 |
H62 |
C6 |
C5 |
H51 |
299.8 |
305.0 |
H62 |
C6 |
C5 |
H52 |
49.3 |
185.0 |
C5 |
C6 |
H62 |
H61 |
240.5 |
120.5 |