PDB Chemical Component CYG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CYG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.468 |
1.468 |
| N |
H |
1.021 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.525 |
1.507 |
| CA |
CB |
1.555 |
1.529 |
| CA |
HA |
1.115 |
1.091 |
| C |
O |
1.227 |
1.208 |
| C |
OXT |
1.344 |
1.342 |
| CB |
SG |
1.805 |
1.810 |
| CB |
HB2 |
1.116 |
1.089 |
| CB |
HB3 |
1.115 |
1.089 |
| SG |
CD1 |
1.670 |
1.711 |
| N1 |
CA1 |
1.493 |
1.468 |
| N1 |
HN11 |
1.020 |
1.009 |
| N1 |
HN12 |
1.021 |
1.009 |
| CA1 |
CB1 |
1.544 |
1.530 |
| CA1 |
C1 |
1.494 |
1.506 |
| CA1 |
HA1 |
1.115 |
1.090 |
| CB1 |
CG1 |
1.538 |
1.529 |
| CB1 |
HB13 |
1.115 |
1.090 |
| CB1 |
HB12 |
1.115 |
1.090 |
| CG1 |
CD1 |
1.524 |
1.507 |
| CG1 |
HG13 |
1.115 |
1.090 |
| CG1 |
HG12 |
1.115 |
1.090 |
| CD1 |
OE2 |
1.319 |
1.212 |
| C1 |
O1 |
1.355 |
1.208 |
| C1 |
O2 |
1.367 |
1.342 |
| O2 |
HO2 |
0.950 |
0.967 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for CYG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
113.8 |
106.7 |
| CA |
N |
H2 |
110.7 |
106.7 |
| N |
CA |
C |
113.8 |
109.5 |
| N |
CA |
CB |
115.1 |
109.5 |
| N |
CA |
HA |
102.7 |
109.5 |
| H |
N |
H2 |
110.6 |
106.8 |
| C |
CA |
CB |
111.4 |
109.5 |
| C |
CA |
HA |
107.2 |
109.4 |
| CA |
C |
O |
122.3 |
120.0 |
| CA |
C |
OXT |
119.5 |
120.0 |
| CB |
CA |
HA |
105.6 |
109.5 |
| CA |
CB |
SG |
111.3 |
109.5 |
| CA |
CB |
HB2 |
111.5 |
109.5 |
| CA |
CB |
HB3 |
111.6 |
109.5 |
| O |
C |
OXT |
118.2 |
120.0 |
| C |
OXT |
HXT |
119.5 |
120.0 |
| SG |
CB |
HB2 |
111.6 |
109.5 |
| SG |
CB |
HB3 |
111.6 |
109.4 |
| CB |
SG |
CD1 |
97.2 |
100.0 |
| HB2 |
CB |
HB3 |
98.8 |
109.5 |
| SG |
CD1 |
CG1 |
111.9 |
120.0 |
| SG |
CD1 |
OE2 |
111.6 |
120.1 |
| CA1 |
N1 |
HN11 |
112.2 |
106.7 |
| CA1 |
N1 |
HN12 |
111.2 |
106.7 |
| N1 |
CA1 |
CB1 |
112.2 |
109.5 |
| N1 |
CA1 |
C1 |
110.3 |
109.5 |
| N1 |
CA1 |
HA1 |
109.0 |
109.5 |
| HN11 |
N1 |
HN12 |
111.2 |
106.6 |
| CB1 |
CA1 |
C1 |
114.6 |
109.5 |
| CB1 |
CA1 |
HA1 |
104.0 |
109.4 |
| CA1 |
CB1 |
CG1 |
113.5 |
109.6 |
| CA1 |
CB1 |
HB13 |
110.7 |
109.4 |
| CA1 |
CB1 |
HB12 |
110.8 |
109.5 |
| C1 |
CA1 |
HA1 |
106.2 |
109.4 |
| CA1 |
C1 |
O1 |
119.9 |
120.0 |
| CA1 |
C1 |
O2 |
120.1 |
120.0 |
| CG1 |
CB1 |
HB13 |
110.7 |
109.5 |
| CG1 |
CB1 |
HB12 |
110.7 |
109.5 |
| CB1 |
CG1 |
CD1 |
111.1 |
109.5 |
| CB1 |
CG1 |
HG13 |
111.6 |
109.5 |
| CB1 |
CG1 |
HG12 |
111.6 |
109.5 |
| HB13 |
CB1 |
HB12 |
99.6 |
109.4 |
| CD1 |
CG1 |
HG13 |
111.6 |
109.5 |
| CD1 |
CG1 |
HG12 |
111.6 |
109.5 |
| CG1 |
CD1 |
OE2 |
111.9 |
120.0 |
| HG13 |
CG1 |
HG12 |
98.8 |
109.4 |
| O1 |
C1 |
O2 |
120.0 |
119.9 |
| C1 |
O2 |
HO2 |
120.1 |
120.1 |
Torsion Angles for CYG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.2 |
113.8 |
| C |
CA |
N |
CB |
130.3 |
120.1 |
| C |
CA |
N |
HA |
244.5 |
240.1 |
| N |
CA |
C |
O |
79.0 |
329.9 |
| N |
CA |
C |
OXT |
258.9 |
150.0 |
| CB |
CA |
N |
HA |
114.2 |
120.0 |
| N |
CA |
CB |
SG |
204.2 |
300.0 |
| N |
CA |
CB |
HB2 |
329.5 |
180.0 |
| N |
CA |
CB |
HB3 |
78.9 |
60.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
C |
180.0 |
173.9 |
| H |
N |
CA |
CB |
49.7 |
53.8 |
| H |
N |
CA |
HA |
295.5 |
293.8 |
| CA |
N |
H2 |
H |
127.0 |
113.7 |
| H2 |
N |
CA |
C |
54.8 |
60.0 |
| H2 |
N |
CA |
CB |
284.5 |
300.0 |
| H2 |
N |
CA |
HA |
170.3 |
180.0 |
| C |
CA |
N |
H |
180.0 |
173.9 |
| C |
CA |
N |
H2 |
54.8 |
60.0 |
| N |
CA |
C |
CB |
227.9 |
240.0 |
| N |
CA |
C |
HA |
112.8 |
119.9 |
| CB |
CA |
C |
HA |
244.9 |
240.0 |
| C |
CA |
CB |
SG |
72.8 |
180.0 |
| C |
CA |
CB |
HB2 |
198.1 |
60.0 |
| C |
CA |
CB |
HB3 |
307.5 |
300.0 |
| O |
C |
CA |
OXT |
180.1 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| CB |
CA |
N |
H |
49.7 |
53.8 |
| CB |
CA |
N |
H2 |
284.5 |
300.0 |
| N |
CA |
CB |
C |
131.4 |
120.0 |
| N |
CA |
CB |
HA |
247.5 |
240.0 |
| C |
CA |
CB |
HA |
116.1 |
120.0 |
| CB |
CA |
C |
O |
211.1 |
89.9 |
| CB |
CA |
C |
OXT |
31.1 |
270.1 |
| SG |
CB |
CA |
HB2 |
234.7 |
120.0 |
| SG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
SG |
CD1 |
222.0 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
120.0 |
| HA |
CA |
N |
H |
295.5 |
293.8 |
| HA |
CA |
N |
H2 |
170.3 |
180.0 |
| N |
CA |
HA |
C |
239.8 |
240.0 |
| N |
CA |
HA |
CB |
121.0 |
120.0 |
| C |
CA |
HA |
CB |
241.1 |
240.0 |
| HA |
CA |
C |
O |
326.2 |
209.9 |
| HA |
CA |
C |
OXT |
146.1 |
30.1 |
| HA |
CA |
CB |
SG |
316.7 |
60.0 |
| HA |
CA |
CB |
HB2 |
82.0 |
300.0 |
| HA |
CA |
CB |
HB3 |
191.4 |
180.0 |
| O |
C |
CA |
CB |
211.1 |
89.9 |
| O |
C |
CA |
HA |
326.2 |
209.9 |
| CA |
C |
O |
OXT |
179.9 |
180.1 |
| O |
C |
OXT |
HXT |
359.9 |
0.1 |
| OXT |
C |
CA |
CB |
31.1 |
270.1 |
| OXT |
C |
CA |
HA |
146.1 |
30.1 |
| CA |
C |
OXT |
O |
180.1 |
179.9 |
| SG |
CB |
CA |
HA |
316.7 |
60.0 |
| CA |
CB |
SG |
HB2 |
125.3 |
240.0 |
| CA |
CB |
SG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
SG |
HB3 |
109.4 |
240.0 |
| CB |
SG |
CD1 |
CG1 |
148.7 |
180.0 |
| CB |
SG |
CD1 |
OE2 |
22.6 |
359.9 |
| HB2 |
CB |
CA |
HA |
82.0 |
300.0 |
| CA |
CB |
HB2 |
SG |
234.9 |
120.0 |
| CA |
CB |
HB2 |
HB3 |
117.4 |
240.0 |
| SG |
CB |
HB2 |
HB3 |
242.6 |
120.0 |
| HB2 |
CB |
SG |
CD1 |
96.8 |
300.0 |
| HB3 |
CB |
CA |
HA |
191.4 |
180.0 |
| CA |
CB |
HB3 |
SG |
125.2 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
242.6 |
120.0 |
| SG |
CB |
HB3 |
HB2 |
117.4 |
240.0 |
| HB3 |
CB |
SG |
CD1 |
347.4 |
60.0 |
| CD1 |
SG |
CB |
HB2 |
96.8 |
300.0 |
| CD1 |
SG |
CB |
HB3 |
347.4 |
60.0 |
| CB1 |
CG1 |
CD1 |
SG |
289.9 |
179.9 |
| SG |
CD1 |
CG1 |
HG13 |
164.6 |
59.9 |
| SG |
CD1 |
CG1 |
HG12 |
55.2 |
300.0 |
| CG1 |
CD1 |
SG |
OE2 |
126.2 |
180.1 |
| HN11 |
N1 |
CA1 |
HN12 |
125.3 |
246.3 |
| CB1 |
CA1 |
N1 |
C1 |
230.9 |
239.9 |
| CB1 |
CA1 |
N1 |
HA1 |
114.6 |
119.9 |
| N1 |
CA1 |
CB1 |
CG1 |
55.6 |
300.1 |
| N1 |
CA1 |
CB1 |
HB13 |
180.8 |
60.1 |
| N1 |
CA1 |
CB1 |
HB12 |
290.3 |
180.0 |
| C1 |
CA1 |
N1 |
HA1 |
243.8 |
240.0 |
| N1 |
CA1 |
C1 |
O1 |
174.0 |
330.0 |
| N1 |
CA1 |
C1 |
O2 |
353.0 |
150.0 |
| CA1 |
N1 |
HN11 |
HN12 |
234.7 |
113.8 |
| HN11 |
N1 |
CA1 |
CB1 |
180.0 |
300.0 |
| HN11 |
N1 |
CA1 |
C1 |
309.1 |
60.1 |
| HN11 |
N1 |
CA1 |
HA1 |
65.3 |
180.1 |
| CA1 |
N1 |
HN12 |
HN11 |
125.9 |
246.3 |
| HN12 |
N1 |
CA1 |
CB1 |
54.7 |
53.7 |
| HN12 |
N1 |
CA1 |
C1 |
183.8 |
173.8 |
| HN12 |
N1 |
CA1 |
HA1 |
300.0 |
293.8 |
| CB1 |
CA1 |
N1 |
HN11 |
180.0 |
300.0 |
| CB1 |
CA1 |
N1 |
HN12 |
54.7 |
53.7 |
| N1 |
CA1 |
CB1 |
C1 |
126.8 |
120.1 |
| N1 |
CA1 |
CB1 |
HA1 |
242.4 |
240.0 |
| C1 |
CA1 |
CB1 |
HA1 |
115.5 |
120.0 |
| CB1 |
CA1 |
C1 |
O1 |
301.8 |
90.0 |
| CB1 |
CA1 |
C1 |
O2 |
120.8 |
270.1 |
| CG1 |
CB1 |
CA1 |
HB13 |
234.8 |
240.0 |
| CG1 |
CB1 |
CA1 |
HB12 |
125.3 |
120.1 |
| CA1 |
CB1 |
CG1 |
CD1 |
182.2 |
180.0 |
| CA1 |
CB1 |
CG1 |
HG13 |
307.4 |
300.0 |
| CA1 |
CB1 |
CG1 |
HG12 |
56.9 |
59.9 |
| HB13 |
CB1 |
CA1 |
HB12 |
250.5 |
240.1 |
| C1 |
CA1 |
N1 |
HN11 |
309.1 |
60.1 |
| C1 |
CA1 |
N1 |
HN12 |
183.8 |
173.8 |
| N1 |
CA1 |
C1 |
CB1 |
232.2 |
239.9 |
| N1 |
CA1 |
C1 |
HA1 |
117.9 |
120.0 |
| CB1 |
CA1 |
C1 |
HA1 |
245.8 |
240.1 |
| C1 |
CA1 |
CB1 |
CG1 |
288.8 |
180.0 |
| C1 |
CA1 |
CB1 |
HB13 |
54.0 |
300.0 |
| C1 |
CA1 |
CB1 |
HB12 |
163.5 |
59.9 |
| O1 |
C1 |
CA1 |
O2 |
180.9 |
179.9 |
| CA1 |
C1 |
O2 |
HO2 |
180.1 |
180.0 |
| HA1 |
CA1 |
N1 |
HN11 |
65.3 |
180.1 |
| HA1 |
CA1 |
N1 |
HN12 |
300.0 |
293.8 |
| N1 |
CA1 |
HA1 |
CB1 |
119.9 |
120.0 |
| N1 |
CA1 |
HA1 |
C1 |
241.2 |
240.0 |
| CB1 |
CA1 |
HA1 |
C1 |
121.3 |
120.0 |
| HA1 |
CA1 |
CB1 |
CG1 |
173.2 |
60.0 |
| HA1 |
CA1 |
CB1 |
HB13 |
298.5 |
180.1 |
| HA1 |
CA1 |
CB1 |
HB12 |
48.0 |
300.0 |
| HA1 |
CA1 |
C1 |
O1 |
56.0 |
210.0 |
| HA1 |
CA1 |
C1 |
O2 |
235.1 |
30.0 |
| SG |
CD1 |
CG1 |
CB1 |
289.9 |
179.9 |
| CG1 |
CB1 |
CA1 |
C1 |
288.8 |
180.0 |
| CG1 |
CB1 |
CA1 |
HA1 |
173.2 |
60.0 |
| CA1 |
CB1 |
CG1 |
HB13 |
125.3 |
120.0 |
| CA1 |
CB1 |
CG1 |
HB12 |
234.7 |
239.9 |
| HB13 |
CB1 |
CG1 |
HB12 |
109.5 |
119.9 |
| CD1 |
CG1 |
CB1 |
HG13 |
234.7 |
240.0 |
| CD1 |
CG1 |
CB1 |
HG12 |
125.2 |
120.0 |
| CB1 |
CG1 |
CD1 |
OE2 |
55.9 |
0.1 |
| HG13 |
CG1 |
CB1 |
HG12 |
250.5 |
240.1 |
| HB13 |
CB1 |
CA1 |
C1 |
54.0 |
300.0 |
| HB13 |
CB1 |
CA1 |
HA1 |
298.5 |
180.1 |
| CA1 |
CB1 |
HB13 |
CG1 |
233.2 |
239.9 |
| CA1 |
CB1 |
HB13 |
HB12 |
116.6 |
120.0 |
| CG1 |
CB1 |
HB13 |
HB12 |
243.4 |
240.0 |
| HB13 |
CB1 |
CG1 |
CD1 |
56.9 |
60.0 |
| HB13 |
CB1 |
CG1 |
HG13 |
182.1 |
180.0 |
| HB13 |
CB1 |
CG1 |
HG12 |
291.6 |
299.9 |
| HB12 |
CB1 |
CA1 |
C1 |
163.5 |
59.9 |
| HB12 |
CB1 |
CA1 |
HA1 |
48.0 |
300.0 |
| CA1 |
CB1 |
HB12 |
CG1 |
126.8 |
120.1 |
| CA1 |
CB1 |
HB12 |
HB13 |
243.4 |
240.1 |
| CG1 |
CB1 |
HB12 |
HB13 |
116.6 |
120.0 |
| HB12 |
CB1 |
CG1 |
CD1 |
307.4 |
300.0 |
| HB12 |
CB1 |
CG1 |
HG13 |
72.7 |
60.1 |
| HB12 |
CB1 |
CG1 |
HG12 |
182.2 |
180.0 |
| SG |
CD1 |
CG1 |
OE2 |
234.0 |
179.9 |
| CD1 |
CG1 |
CB1 |
HB13 |
56.9 |
60.0 |
| CD1 |
CG1 |
CB1 |
HB12 |
307.4 |
300.0 |
| CB1 |
CG1 |
CD1 |
HG13 |
125.3 |
120.0 |
| CB1 |
CG1 |
CD1 |
HG12 |
234.7 |
240.0 |
| HG13 |
CG1 |
CD1 |
HG12 |
109.4 |
119.9 |
| HG13 |
CG1 |
CB1 |
HB13 |
182.1 |
180.0 |
| HG13 |
CG1 |
CB1 |
HB12 |
72.7 |
60.1 |
| CB1 |
CG1 |
HG13 |
CD1 |
235.0 |
239.9 |
| CB1 |
CG1 |
HG13 |
HG12 |
117.6 |
120.0 |
| CD1 |
CG1 |
HG13 |
HG12 |
242.6 |
240.0 |
| HG13 |
CG1 |
CD1 |
OE2 |
290.6 |
240.0 |
| HG12 |
CG1 |
CB1 |
HB13 |
291.6 |
299.9 |
| HG12 |
CG1 |
CB1 |
HB12 |
182.2 |
180.0 |
| CB1 |
CG1 |
HG12 |
CD1 |
125.0 |
120.0 |
| CB1 |
CG1 |
HG12 |
HG13 |
242.4 |
240.0 |
| CD1 |
CG1 |
HG12 |
HG13 |
117.4 |
120.0 |
| HG12 |
CG1 |
CD1 |
OE2 |
181.1 |
120.1 |
| SG |
CD1 |
OE2 |
CG1 |
126.2 |
180.1 |
| OE2 |
CD1 |
CG1 |
HG13 |
290.6 |
240.0 |
| OE2 |
CD1 |
CG1 |
HG12 |
181.1 |
120.1 |
| O1 |
C1 |
CA1 |
HA1 |
56.0 |
210.0 |
| CA1 |
C1 |
O1 |
O2 |
179.1 |
180.1 |
| O1 |
C1 |
O2 |
HO2 |
359.1 |
0.1 |
| O2 |
C1 |
CA1 |
HA1 |
235.1 |
30.0 |
| CA1 |
C1 |
O2 |
O1 |
181.0 |
179.9 |