Atom Nomenclature for CY7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CY7

Atom Name (V3) Atom Name (V2)
CAN CAN
CAL CAL
CAK CAK
CAM CAM
NAZ NAZ
CBK CBK
CAV CAV
OBE OBE
CBN CBN
CBJ CBJ
CAR CAR
CLA CLA
CAP CAP
CAO CAO
CBI CBI
NBC NBC
CBP CBP
CBR CBR
CAS CAS
CBL CBL
CAJ CAJ
NAD NAD
CAQ CAQ
NBA NBA
CBQ CBQ
CAT CAT
CBO CBO
OBD OBD
CAU CAU
CAA CAA
CBM CBM
NBB NBB
CBH CBH
OAG OAG
CAX CAX
CBT CBT
CAY CAY
NBU NBU
CAB CAB
CAC CAC
SG SG
CB CB
CA CA
C C
O O
N N
OXT OXT
HAN HAN
HAL HAL
HAK HAK
HAM HAM
HAV1 1HAV
HAV2 2HAV
HAP HAP
HAR HAR
HAO HAO
HAS HAS
HAQ HAQ
HBA HBA
HAT HAT
HAU1 1HAU
HAU2 2HAU
HAA1 1HAA
HAA2 2HAA
HAA3 3HAA
HBB HBB
HAX1 1HAX
HAX2 2HAX
HBT HBT
HAY1 1HAY
HAY2 2HAY
HAB1 1HAB
HAB2 2HAB
HAB3 3HAB
HAC1 1HAC
HAC2 2HAC
HAC3 3HAC
HBC1 1HBC
HBC2 2HBC
HA HA
HN1 1HN
HN2 2HN
HOT HOT