PDB Chemical Component CY0

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CY0

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAI CAF 1.399 1.394
CAI CAX 1.394 1.399
CAI HAI 1.103 1.087
CAF CAE 1.394 1.396
CAF HAF 1.103 1.086
CAE CAG 1.393 1.396
CAE HAE 1.103 1.086
CAG CAJ 1.396 1.394
CAG HAG 1.103 1.085
CAJ CAX 1.394 1.398
CAJ HAJ 1.103 1.087
CAX NAT 1.344 1.404
NAT C6 1.362 1.417
NAT HAT 1.020 1.013
C6 C5 1.406 1.392
C6 N1 1.361 1.346
C5 CAM 1.399 1.405
C5 C4 1.401 1.404
CAM CAY 1.405 1.391
CAM HAM 1.102 1.088
N1 C2 1.336 1.343
C2 N3 1.335 1.348
C2 H2 1.103 1.083
N3 C4 1.352 1.345
C4 CAL 1.399 1.393
CAL CAK 1.400 1.398
CAL HAL 1.103 1.089
CAK CAY 1.408 1.390
CAK HAK 1.103 1.088
CAY NAS 1.357 1.395
NAS CAW 1.370 1.405
NAS HAS 1.020 1.027
CAW OAC 1.242 1.227
CAW CAO 1.543 1.524
CAO CAN 1.561 1.524
CAO HAO1 1.115 1.096
CAO HAO2 1.115 1.098
CAN SAU 1.857 1.815
CAN HAN1 1.115 1.096
CAN HAN2 1.115 1.095
SAU CB 1.791 1.807
CB CA 1.507 1.531
CB HBC1 1.115 1.095
CB HBC2 1.115 1.096
CA C 1.494 1.520
CA N 1.459 1.442
CA HA 1.115 1.096
C O 1.237 1.224
C OXT 1.326 1.355
N HN1 1.020 1.006
N HN2 1.020 1.006
OXT HOT 0.950 0.981

Bond Angles for CY0

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAF CAI CAX 119.9 120.3
CAF CAI HAI 120.1 119.4
CAI CAF CAE 120.9 120.0
CAI CAF HAF 119.6 120.0
CAX CAI HAI 120.0 120.4
CAI CAX CAJ 119.0 119.5
CAI CAX NAT 121.9 120.2
CAE CAF HAF 119.6 120.0
CAF CAE CAG 119.3 120.0
CAF CAE HAE 120.4 120.0
CAG CAE HAE 120.4 120.0
CAE CAG CAJ 119.8 120.0
CAE CAG HAG 120.1 120.0
CAJ CAG HAG 120.1 120.0
CAG CAJ CAX 121.2 120.3
CAG CAJ HAJ 119.4 119.4
CAX CAJ HAJ 119.4 120.3
CAJ CAX NAT 119.1 120.3
CAX NAT C6 124.6 132.4
CAX NAT HAT 117.7 114.3
C6 NAT HAT 117.7 113.3
NAT C6 C5 119.2 119.4
NAT C6 N1 122.9 116.7
C5 C6 N1 117.9 124.0
C6 C5 CAM 120.5 122.9
C6 C5 C4 119.3 116.1
C6 N1 C2 121.3 114.6
CAM C5 C4 120.1 121.0
C5 CAM CAY 120.7 120.0
C5 CAM HAM 119.7 121.1
C5 C4 N3 119.0 121.5
C5 C4 CAL 120.0 117.8
CAY CAM HAM 119.7 118.8
CAM CAY CAK 118.3 119.5
CAM CAY NAS 122.6 120.3
N1 C2 N3 121.7 127.1
N1 C2 H2 119.2 116.5
N3 C2 H2 119.1 116.4
C2 N3 C4 120.8 116.7
N3 C4 CAL 121.0 120.7
C4 CAL CAK 119.5 121.6
C4 CAL HAL 120.3 119.8
CAK CAL HAL 120.2 118.7
CAL CAK CAY 121.3 120.1
CAL CAK HAK 119.4 119.3
CAY CAK HAK 119.3 120.7
CAK CAY NAS 118.6 120.2
CAY NAS CAW 126.4 128.2
CAY NAS HAS 116.8 116.3
CAW NAS HAS 116.8 115.5
NAS CAW OAC 126.2 126.7
NAS CAW CAO 115.1 111.2
OAC CAW CAO 118.7 122.1
CAW CAO CAN 108.5 112.2
CAW CAO HAO1 112.6 107.7
CAW CAO HAO2 112.6 107.8
CAN CAO HAO1 112.6 110.5
CAN CAO HAO2 112.6 110.3
CAO CAN SAU 117.2 110.7
CAO CAN HAN1 109.4 110.7
CAO CAN HAN2 109.4 110.7
HAO1 CAO HAO2 97.8 108.2
SAU CAN HAN1 109.4 108.6
SAU CAN HAN2 109.4 108.5
CAN SAU CB 102.5 98.4
HAN1 CAN HAN2 100.7 107.6
SAU CB CA 111.0 113.8
SAU CB HBC1 111.6 107.3
SAU CB HBC2 111.7 107.6
CA CB HBC1 111.6 109.8
CA CB HBC2 111.6 110.4
CB CA C 97.9 112.4
CB CA N 105.9 111.9
CB CA HA 113.6 108.8
HBC1 CB HBC2 98.8 107.6
C CA N 111.0 111.9
C CA HA 113.6 106.1
CA C O 120.0 123.8
CA C OXT 117.0 113.3
N CA HA 113.6 105.2
CA N HN1 111.6 119.0
CA N HN2 111.5 119.0
O C OXT 122.9 123.0
C OXT HOT 109.5 111.9
HN1 N HN2 98.9 120.6

Torsion Angles for CY0

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAX CAI CAF HAI 180.0 180.0
CAF CAI CAX CAJ 0.7 0.1
CAF CAI CAX NAT 180.8 180.0
CAE CAF CAI HAF 180.0 180.0
CAI CAF CAE CAG 0.2 359.9
CAI CAF CAE HAE 180.2 180.1
CAF CAI CAX HAI 180.0 180.0
CAX CAI CAF CAE 359.2 360.0
CAX CAI CAF HAF 179.2 180.0
CAG CAJ CAX CAI 359.9 360.0
CAI CAX CAJ HAJ 179.9 180.0
CAJ CAX CAI NAT 179.9 180.1
CAI CAX NAT C6 43.2 180.0
CAI CAX NAT HAT 223.2 0.0
CAF CAI HAI CAX 180.0 180.0
HAI CAI CAF CAE 179.3 180.0
HAI CAI CAF HAF 359.2 0.0
HAI CAI CAX CAJ 180.7 180.0
HAI CAI CAX NAT 0.8 359.9
CAE CAF CAI CAX 359.2 360.0
CAE CAF CAI HAI 179.3 180.0
CAI CAF CAE HAF 180.0 180.0
CAG CAE CAF HAE 180.0 179.9
CAF CAE CAG CAJ 0.3 0.1
CAF CAE CAG HAG 180.3 180.0
HAF CAF CAI CAX 179.2 180.0
HAF CAF CAI HAI 359.2 0.0
CAI CAF HAF CAE 180.0 180.0
HAF CAF CAE CAG 180.3 180.0
HAF CAF CAE HAE 0.3 0.1
CAG CAE CAF HAF 180.3 180.0
CAF CAE CAG HAE 180.0 180.1
CAJ CAG CAE HAG 180.0 180.0
CAE CAG CAJ CAX 359.6 360.0
CAE CAG CAJ HAJ 179.6 179.9
HAE CAE CAF HAF 0.3 0.1
CAF CAE HAE CAG 180.0 179.9
HAE CAE CAG CAJ 180.3 179.9
HAE CAE CAG HAG 0.3 359.9
CAI CAX CAJ CAG 359.9 360.0
CAJ CAG CAE HAE 180.3 179.9
CAE CAG CAJ HAG 180.0 180.0
CAX CAJ CAG HAJ 180.0 180.0
CAG CAJ CAX NAT 179.8 180.0
HAG CAG CAE HAE 0.3 359.9
CAE CAG HAG CAJ 180.0 180.0
HAG CAG CAJ CAX 179.6 180.0
HAG CAG CAJ HAJ 359.6 360.0
CAJ CAX CAI HAI 180.7 180.0
CAI CAX CAJ NAT 180.1 179.9
CAX CAJ CAG HAG 179.6 180.0
CAG CAJ CAX HAJ 180.0 180.0
CAJ CAX NAT C6 223.3 359.9
CAJ CAX NAT HAT 43.3 180.0
HAJ CAJ CAG HAG 359.6 360.0
CAG CAJ HAJ CAX 180.0 180.0
HAJ CAJ CAX NAT 359.8 0.1
NAT CAX CAI HAI 0.8 359.9
CAI CAX NAT CAJ 179.9 180.1
NAT CAX CAJ HAJ 359.8 0.1
C6 NAT CAX HAT 180.0 179.9
CAX NAT C6 C5 189.2 150.0
CAX NAT C6 N1 9.4 330.1
CAX NAT C6 HAT 180.0 180.1
C5 C6 NAT N1 179.8 180.0
NAT C6 C5 CAM 359.9 0.0
NAT C6 C5 C4 179.4 180.0
NAT C6 N1 C2 180.3 180.0
CAX NAT HAT C6 180.0 179.9
HAT NAT C6 C5 9.2 330.0
HAT NAT C6 N1 189.4 150.0
C5 C6 NAT HAT 9.2 330.0
NAT C6 C5 N1 180.2 180.0
C5 C6 N1 C2 0.5 0.0
CAM C5 C6 C4 180.5 180.0
C6 C5 CAM CAY 178.3 179.9
C6 C5 CAM HAM 358.3 360.0
C6 C5 C4 N3 0.4 0.0
C6 C5 C4 CAL 180.1 180.0
N1 C6 NAT HAT 189.4 150.0
NAT C6 N1 C5 179.8 180.0
N1 C6 C5 CAM 179.7 180.0
N1 C6 C5 C4 359.2 360.0
C6 N1 C2 N3 0.3 0.0
C6 N1 C2 H2 180.3 179.9
CAM C5 C6 N1 179.7 180.0
C6 C5 CAM C4 179.5 180.0
CAM C5 C4 N3 179.9 180.0
CAM C5 C4 CAL 359.5 0.0
CAY CAM C5 HAM 180.0 179.9
C5 CAM CAY CAK 3.0 0.1
C5 CAM CAY NAS 175.0 180.0
C4 C5 C6 N1 359.2 360.0
C6 C5 C4 CAM 180.5 180.0
C4 C5 CAM CAY 358.9 359.9
C4 C5 CAM HAM 178.9 180.0
C2 N3 C4 C5 0.3 0.0
N3 C4 C5 CAL 180.4 180.0
C5 C4 CAL CAK 0.1 360.0
C5 C4 CAL HAL 180.1 180.0
CAY CAM C5 C4 358.9 359.9
C5 CAM CAY HAM 180.0 180.1
CAL CAK CAY CAM 356.5 359.9
CAM CAY CAK HAK 176.5 180.0
CAK CAY CAM NAS 188.0 180.0
CAM CAY NAS CAW 343.0 180.1
CAM CAY NAS HAS 163.0 0.0
HAM CAM C5 C4 178.9 180.0
C5 CAM HAM CAY 180.0 179.9
HAM CAM CAY CAK 183.0 180.0
HAM CAM CAY NAS 355.0 360.0
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 359.3 359.9
C5 C4 N3 C2 0.3 0.0
N1 C2 N3 H2 180.0 179.9
C2 N3 C4 CAL 180.7 180.0
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 179.3 180.0
C5 C4 N3 CAL 179.6 180.0
C4 N3 C2 H2 179.3 180.0
N3 C4 CAL CAK 179.7 180.0
N3 C4 CAL HAL 359.7 0.0
C5 C4 CAL N3 180.4 180.0
CAK CAL C4 HAL 180.0 180.0
C4 CAL CAK CAY 1.9 0.0
C4 CAL CAK HAK 181.9 180.0
CAM CAY CAK CAL 356.5 359.9
C4 CAL CAK HAL 180.0 180.0
CAY CAK CAL HAK 180.0 180.0
CAL CAK CAY NAS 184.2 180.0
C4 CAL HAL CAK 180.0 180.0
HAL CAL CAK CAY 182.0 180.0
HAL CAL CAK HAK 1.9 0.0
CAK CAY CAM HAM 183.0 180.0
CAM CAY CAK NAS 172.3 180.0
CAY CAK CAL HAL 182.0 180.0
CAL CAK CAY HAK 180.0 180.0
CAK CAY NAS CAW 155.0 0.1
CAK CAY NAS HAS 335.0 180.0
HAK CAK CAL HAL 1.9 0.0
CAL CAK HAK CAY 180.0 180.0
HAK CAK CAY NAS 4.2 0.0
NAS CAY CAM HAM 355.0 360.0
CAM CAY NAS CAK 188.0 180.0
NAS CAY CAK HAK 4.2 0.0
CAW NAS CAY HAS 180.0 180.1
CAY NAS CAW OAC 8.4 360.0
CAY NAS CAW CAO 186.9 180.0
CAY NAS CAW HAS 180.0 179.9
OAC CAW NAS CAO 181.5 179.9
NAS CAW CAO CAN 64.5 180.1
NAS CAW CAO HAO1 299.2 58.2
NAS CAW CAO HAO2 189.7 301.7
CAY NAS HAS CAW 180.0 180.1
HAS NAS CAW OAC 188.4 180.1
HAS NAS CAW CAO 6.9 0.1
OAC CAW NAS HAS 188.4 180.1
NAS CAW OAC CAO 178.5 180.1
OAC CAW CAO CAN 243.1 0.1
OAC CAW CAO HAO1 117.8 238.3
OAC CAW CAO HAO2 8.3 121.8
CAO CAW NAS HAS 6.9 0.1
NAS CAW CAO OAC 181.4 179.9
CAN CAO CAW HAO1 125.3 121.8
CAN CAO CAW HAO2 234.7 238.3
CAW CAO CAN SAU 87.6 179.5
CAW CAO CAN HAN1 322.4 299.9
CAW CAO CAN HAN2 212.9 59.2
HAO1 CAO CAW HAO2 109.5 116.5
CAW CAO CAN HAO1 234.7 239.8
CAW CAO CAN HAO2 125.3 120.2
HAO1 CAO CAN HAO2 250.6 240.5
SAU CAN CAO HAN1 125.3 239.6
SAU CAN CAO HAN2 234.7 120.3
CAO CAN SAU CB 193.8 179.9
HAN1 CAN CAO HAN2 109.5 240.7
CAW CAO HAO1 CAN 123.0 122.9
CAW CAO HAO1 HAO2 241.5 243.7
CAN CAO HAO1 HAO2 118.5 120.8
HAO1 CAO CAN SAU 212.9 299.7
HAO1 CAO CAN HAN1 87.7 60.2
HAO1 CAO CAN HAN2 338.2 179.4
CAW CAO HAO2 CAN 237.0 237.2
CAW CAO HAO2 HAO1 118.5 116.2
CAN CAO HAO2 HAO1 241.5 239.1
HAO2 CAO CAN SAU 322.4 59.3
HAO2 CAO CAN HAN1 197.1 179.7
HAO2 CAO CAN HAN2 87.6 299.0
SAU CAN CAO HAO1 212.9 299.7
SAU CAN CAO HAO2 322.4 59.3
CAO CAN SAU HAN1 234.7 121.7
CAO CAN SAU HAN2 125.3 238.4
HAN1 CAN SAU HAN2 250.5 116.7
CAN SAU CB CA 90.8 178.2
CAN SAU CB HBC1 325.5 300.0
CAN SAU CB HBC2 216.0 55.6
HAN1 CAN CAO HAO1 87.7 60.2
HAN1 CAN CAO HAO2 197.1 179.7
CAO CAN HAN1 SAU 129.7 238.3
CAO CAN HAN1 HAN2 244.8 121.1
SAU CAN HAN1 HAN2 115.2 242.8
HAN1 CAN SAU CB 319.1 58.2
HAN2 CAN CAO HAO1 338.2 179.4
HAN2 CAN CAO HAO2 87.6 299.0
CAO CAN HAN2 SAU 230.3 121.6
CAO CAN HAN2 HAN1 115.2 238.9
SAU CAN HAN2 HAN1 244.8 117.3
HAN2 CAN SAU CB 68.6 301.6
CB SAU CAN HAN1 319.1 58.2
CB SAU CAN HAN2 68.6 301.6
CA CB SAU HBC1 125.3 238.2
CA CB SAU HBC2 234.8 122.7
SAU CB CA C 157.1 300.3
SAU CB CA N 271.7 67.2
SAU CB CA HA 37.1 183.1
HBC1 CB SAU HBC2 109.5 244.4
SAU CB CA HBC1 234.7 120.3
SAU CB CA HBC2 125.3 238.9
HBC1 CB CA HBC2 250.5 118.5
C CA CB N 245.4 233.1
C CA CB HA 120.1 117.2
CB CA C O 66.0 121.2
CB CA C OXT 249.0 301.9
N CA CB HA 234.7 244.1
CB CA N HN1 239.8 37.2
CB CA N HN2 130.3 230.5
SAU CB HBC1 CA 124.9 235.8
SAU CB HBC1 HBC2 242.4 115.6
CA CB HBC1 HBC2 117.5 239.8
HBC1 CB CA C 282.4 180.0
HBC1 CB CA N 37.0 306.9
HBC1 CB CA HA 162.3 62.8
SAU CB HBC2 CA 235.1 124.7
SAU CB HBC2 HBC1 117.6 244.6
CA CB HBC2 HBC1 242.4 119.9
HBC2 CB CA C 31.9 61.5
HBC2 CB CA N 146.5 188.4
HBC2 CB CA HA 271.8 304.3
C CA CB HBC1 282.4 180.0
C CA CB HBC2 31.9 61.5
CB CA C N 110.4 126.9
CB CA C HA 239.9 241.2
N CA C HA 129.5 114.3
C CA N HN1 345.0 164.3
C CA N HN2 235.5 357.7
O C CA OXT 177.0 179.3
CA C OXT HOT 176.9 179.3
N CA CB HBC1 37.0 306.9
N CA CB HBC2 146.5 188.4
CB CA N C 254.8 232.8
CB CA N HA 125.3 118.0
C CA N HA 230.5 245.2
N CA C O 315.6 354.3
N CA C OXT 138.6 175.0
HN1 N CA HN2 109.5 166.7
HA CA CB HBC1 162.3 62.8
HA CA CB HBC2 271.8 304.3
CB CA HA C 110.7 121.1
CB CA HA N 238.9 239.9
C CA HA N 128.2 118.8
HA CA C O 186.1 240.0
HA CA C OXT 9.1 60.7
HA CA N HN1 114.5 279.1
HA CA N HN2 5.0 112.5
O C CA N 315.6 354.3
O C CA HA 186.1 240.0
CA C O OXT 183.2 180.7
O C OXT HOT 360.0 0.0
OXT C CA N 138.6 175.0
OXT C CA HA 9.1 60.7
CA C OXT O 176.9 179.3
HN1 N CA HA 114.5 279.1
CA N HN1 HN2 242.5 193.6
HN2 N CA HA 5.0 112.5
CA N HN2 HN1 117.5 166.4